* update globalarrays package to current releases
* rename class to Globalarrays to match package folder
* rename bytes to int64, minor cleanup of descriptions
* int64 False by default
* remove reference to external as we aren't supplying paths, and use args.append()
* correcting args.append syntax
* add conflicts
* Fix bug; don't know why this ever worked in the first place.
* Add fix to netcdf-fortran too; flake8
* Simplify configure_args()
* netcdf-fortran: simplify that too
* Use libs[0] and headers.directories[0] instead of hardcoded paths in opencv dependencies
* Fix library finding in libjpeg-turbo
* Use build_type=Debug instead of +debug to determine build_type
Spack doesn't have a CSharp package, so the only time ANTLR would
succeed is if a system-installed CSharp was available. This disables
CSharp support, which enables building on systems without
system-installed CSharp.
* PR #4945 did not make this work on SuSE 11. Adding the latest version of libexpat did. Also update for Expat's move to GitHub.
* Update package.py
* Update package.py
Move to url_for_version()
* Changed netlib-lapack to fix an error in their CMake setup. Changed
netlib-lapack spackage file to add Fortran flags correctly for XL
compiler.
* Fixed line length -- forgot abt flake8...
* Fix the package version where the ibm patch applies.
- simplify the singleton pattern across the codebase
- reduce lines of code needed for crufty initialization
- reduce functions that need to mess with a global
- Singletons whose semantics changed:
- spack.store.store() -> spack.store
- spack.repo.path() -> spack.repo.path
- spack.config.config() -> spack.config.config
- spack.caches.fetch_cache() -> spack.caches.fetch_cache
- spack.caches.misc_cache() -> spack.caches.misc_cache
- spack.store was previously initialized at the spack.store module level,
but this means the store has to be initialized on every spack call.
- this moves the state in spack.store to a singleton so that the store is
only initialized when needed.
Fixes#8152
Flex 2.6.4 doesn't build with gcc@7:. This sets Flex 2.6.3 as the
preferred version. The flex package had a conflict directive for
this but originally the recorded conflict was specific to ubuntu;
this appears to be an issue on multiple operating systems so this
also updates the conflict to be more general and adds a comment
which links to the relevant issues.
Fixes#7946
Creates an openspeedshop-utils package that does not depend on qt3
and can be used to resolve the needs of cbtf-argonavis-gui.
Changes for creating a release versus develop build are also
included. There are package versions which are no longer relevant
(e.g. 1.3.0 for cbtf-argonavis-gui has been replaced with 1.3.0.0)
but these versions need to be kept to allow uninstalling them;
issue #8173 has been created to investigate this.
- After spack install, these test cases are built in a seperate step, outside of spack, but they need to patched after staging so users don't have to do it in a seperate step.
- The test cases are installed under `<petsc install directory>/share/petsc/examples` and can be built and executed by invoking `gmake -f gmakefile.test` in that directory.
* Added Shim to Support hdf5+mpi in Spack Silo
Added compatibility for hdf5+mpi to silo spackage to support spackages
with dependency chains that include silo and hf5+mpi
* Fixed fixable flake8 issue with silo spackage
Fixed missing whitespace around operator
* Setting MPI Variant to Default to True
As per guidance changing variant to default to MPI builds
* Create custom PATH that texlive requires in its module.
* Updating texlive to 2018 distribution.
* Using platform instead of sys for easier portability across linux and osx.
* Add package for "bumpversion"
bumpversion is a tool that automagically increments version numbers
for projects. It can update files and do other magic along the way.
* Remove py- package prefix and use pypi.io URL
Renamed the package 'bumpversion'.
Fetch the package from pypi.io.
* Add version info for bumpverion@0.5.3
Fixes#8088#7012 added a @when condition for a @run_before check to constrain
that check to only run on Darwin. @when is intended to be used to
choose one of several different implementations of a given function
and cannot be used to conditionally deactivate a check altogether.
This replaces the external decorator with a check that executes at
the beginning of the function.
* dealii: disable tpetra when +cuda; check for '' in cuda_arch
* trilinos: fix Kokkos CUDA
* Revert "trilinos: fix Kokkos CUDA"
This reverts commit 6aae894bc7d49c9e736c06f65b81b8c219443920.
* update according to @aprokop comments
* minor
* fix flake8
For Spectrum MPI, if -np is omitted, the default behavior is to
assign one process per process slot, where the default process slot
allocation is one per core. On systems with many cores, the number
of processes can exceed the size of the grid specified when the
testcase is run and the test case fails. This specifies a small
number of processes when running the test case to prevent failure.
* llvm+lldb plaform=darwin: check for lldb_codesign
Building LLVM with LLDB requires that the "lldb_codesign" code
certificate be created (see
https://llvm.org/svn/llvm-project/lldb/trunk/docs/code-signing.txt for
details). This commit checks for this certificate on Darwin if LLDB is
to be built, and returns an informative error message if this
certificate is unavailable.
Add variants to control building of many 3rd-party modules in opencv.
They are enabled by default, which matches the defaults chosen by
opencv when these options are not set explicitly. This also updates
the lbann opencv dependency to disable most of these new variants by
default in order to build faster.
Fixes#2781
This PR introduces a new attribute for packages called
`archive_files`, which designates files that should be saved from
a package build (e.g. the config.log generated during autotools
builds).
The attribute contains a list of glob expressions; Any file that
matches will be archived in the `<prefix>/.spack/archived-files`
directory. Errors that occur when archiving files are collected and
reported in a file named `<prefix>/.spack/archived-files/errors.txt`.
`AutotoolsPackage` and `CMakePackage` provide a sensible default
override for this attribute.
- Adds v1.3.0 and v1.4.0
- List explicit CMake version dependency (from Benchmark CMake files)
- Disable the building of tests. Starting in v1.4.0 this introduced a dependency on GoogleTest
Tested by building all versions on macOS High Sierra
* New Package: svn2git
https://github.com/nirvdrum/svn2git
svn2git is a tiny utility for migrating projects from Subversion to Git while
keeping the trunk, branches and tags where they should be. It uses git-svn to
clone an svn repository and does some clean-up to make sure branches and tags
are imported in a meaningful way, and that the code checked into master ends up
being what's currently in your svn trunk rather than whichever svn branch your
last commit was in.
* Actually requires +perl variant of subversion.
* fix style issue.
* Added magma package
* Incorporated Serban's change
* Remove deleted files
* argparse.py
* Sync forked Spack repo in github
* Use reported version of IBM XL Fortran compiler for compiler versions
>= 16.0.
Starting with the April 2018 release, the IBM XL C and Fortran
compilers report the same version, 16.0. Consequently, there is
no need to downgrade the Fortran compiler version to match that
of the C compiler.
* Eliminate blank lines.
* Update the Spectrum MPI package.py file to specify the correct compilation
scripts for the PGI compilers.
* mvapich2: add registration cache and file systems variants, avoid empty --with-pm= if no process manager is specified, add missing leading dash in --disable-silent-rules
* mpifileutils: roll back to dtcmp v1.0.3 due to API change, add option to build master branch
* add comment to explain why certain dtcmp is required, rename version for git branch
* dtcmp v1.0.2 is missing github tarball
When building eospac with %clang, spack's Fortran compiler wrapper is called
'flang', which is rejected by the eospac build system..Allow compilation with
%clang by patching the eospac build system.
My testing only covers %clang where flang is actually gfortran. However, this
patch only registers 'flang' as a known Fortran compiler and does not set any
flags or options that are compiler specific.
.
Add configurable HTTP, Python and readline support.
Add previously missing dependencies.
Minor patch to improve Python support (see https://github.com/xrootd/xrootd/pull/695).
* Use GitLab's API endpoint for fetching a git snapshot.
* More GitLab packages use the API.
* find_list_url for GitLab's API URLs.
* Flake8
* Url for 'hacckernels'.
* Check GitLab API regexps before the non-API ones.
* Add Trinity package
New package to install Trinity - another odd installer (assumes installation to /usr/local/bin and doesn't copy dot files hence deleting them)
* Update package.py
added dependencies from https://github.com/trinityrnaseq/trinityrnaseq/wiki/Installing-Trinity
* Update package.py
Copy tree to prefix.bin so that PATH can correctly be set for the Trinity command - can't split it off as it seems everything needs to stay together.
* Update package.py
Fixed over-length lines and space before comma
This commit fixes#7900.
In short: in the absence of constraints to the contrary, spack will
download the preferred version of a package, which is usually the most
recent non-develop version. On a clean spack installation without
hypre installed, `spack install mfem` will download hypre 2.14.0,
which is API-incompatible with mfem 3.3.2 (and earlier versions of
mfem), so spack will throw compiler errors re: the API mismatch.
This commit fixes that error by restricting mfem release versions
3.3.2 and earlier to hypre version 2.10.b to 2.13.999 (only 2.13.0
currently exists, but if it has a non-2.14.x maintenance release,
these versions of hypre should also be permitted).
* automake: added version 1.16.1
* lmod: added version 7.7.29
* git: added version 2.17.0
* tmux: added version 2.7
* scala: added version 2.12.5, fixed typo in version 2.10.6
* Added spark@2.3.0, hadoop@3.1.0, jdk@8u172-b11
* picard: added version 2.18.3
* tar: added version 1.30
Added OpenMP variant for kokkos that can be disabled to build and test
on platforms where OpenMP is not available or desired. Also updated
version list
* Committer: sajid <sajid@xrmlite.phys.northwestern.edu>
modified: var/spack/repos/builtin/packages/py-numpy/package.py
* Corrected typo
* removing whitespace
* remove whitespace
* remove whitespace, if not will do this in vim
* fabtests: new package
* fabtests: fix hashes for github archive behavior & add libfabric dep
* fabtests: both versions confirmed working
* fabtests: use developer provided archive
* Fix build issue with PMIx on aarch64
Work around a bug in PMIx that causes build issues on aarch64. Bug was
fixed in PMIx 2.1.1, so the spack package checks both the architecture
and the PMIx version. Workaround is to just not build the PMIx test and
example code.
* Minor code cleanups
Minor corrections to make 'spack flake8' happy.
* Add support for version 2.1.1
* r-matr: Create new package.
* shocklibs: Create new package.
* r-biom-utils: Create new package.
* r-mgraster: Create new package
* py-poster: Create new package.
* py-requests-toolbelt: Create new package.
* perl-libwww-perl: Create new package.
* py-mg-rast-tools: Create new package.
* mg-rast-tools: Fix version constraints for dependencies.
* Change dependency type of py-setuptools.
* openPMD-api
Add a new package for openPMD-api.
openPMD is a meta-data standard (markup, schema) for hierarchical,
scientific particle and mesh based data.
openPMD-api is a library wrapping the underlying backends (HDF5,
ADIOS, ...) into a single, object-aware API.
* Repository: https://github.com/openPMD/openPMD-api
* Project: https://github.com/openPMDhttp://www.openPMD.org
* mpi variant forwarding: fix concretization
+ I am unable to build suite-sparse@5.2.0 with clang@6.0.0. The build fails
with the error:
```
2397 [ 99%] Linking C executable wildtype_demo
2398 make[4]: Leaving directory
`/tmp/kellyt/spack-stage/spack-stage-w0XYhK/SuiteSparse/GraphBLAS/build'
>> 2399 libgraphblas.so.2.0.1: undefined reference to `__fpclassify'
>> 2400 clang-6.0: error: linker command failed with exit code 1 (use -v to
see invocation)
>> 2401 make[4]: *** [wildtype_demo] Error 1
```
+ This error appears because libgraphblas.so requires `-lm`, but that link
dependency is not explicitly listed in GraphBLAS\CMakeLists.txt.
+ A patch file is provided to add this dependency. The patch is only applied
when the compiler is `%clang`.
* ADIOS 1.13.1
ADIOS 1.13.1 fixes several issues with zero-sized block
reading and writing when compression transports are used.
* SZ 1.4.12.3
Add the lastest SZ release used in ADIOS1.
* geopm: Added initial files for package geopm
and py-natsort dependency
* geopm: Updated variants for hwloc and mpi defaults
* geopm: Cleaned up unwanted hyphenation in description.
* geopm: updates according to change request.
* geopm: Updated minor change requests.
Clarification for ruby-ronn dependency included as a TODO.
This requires changes in the current configure and build process
which will be changed in a future version.
* geopm: changed to AutotoolsPackage and fixed hwloc
The changes for hwloc required to add a specific version bc of a
conflicting version of openmpi's hwloc dependency being below
1.99. This works but updates to this package should check if this
restriction is still required. (Thus TODO added)
* geopm: Added link dependencies (thanks for pointing this out).
Also removed empty line below class definition.
* geopm: Fixed depends_on according to package guide.
Removed wrong type 'run' and removed types for numactl, mpi and hwloc
to use default build & link type.
* geopm: Fixed and updated +doc dependencies
new pacakge ruby-ronn (package specified as in ruby-narray package)
Updated second +doc dependency doxygen.
* geopm: Changed args for Autotools specific feature.
Added enable_or_disable and with_or_without instead of if cascade.
Added overhead variant.
Also added missing dependency (default: build&link) for json-c).
* glvis@3.3: new package
* mesa-glu: now provides 'glu' (GL Utility library)
* openglu: add package, provides glu
* [GLVis] Use MakefilePackage as base. Add 'develop' version.
Small tweaks in the makefile arguments.
* [GLVis] Locate the X11, GL and GLU libraries within their respective
prefixes. Set the C compiler in the makefile arguments.
* [GLVis] Fix a bug: the same variable was used for two different things.
* [libx11] Add the libs property
* [OpenGL] Add the libs property
* [OpenGLU] Add the libs property
* [GLVis] Use the libs properties of libx11, opengl, and openglu
