r-genie3: new package (#8044)

var/spack/repos/builtin/packages/r-genie3/package.py

@@ -0,0 +1,38 @@
+##############################################################################
+# Copyright (c) 2013-2018, Lawrence Livermore National Security, LLC.
+# Produced at the Lawrence Livermore National Laboratory.
+#
+# This file is part of Spack.
+# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
+# LLNL-CODE-647188
+#
+# For details, see https://github.com/spack/spack
+# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU Lesser General Public License (as
+# published by the Free Software Foundation) version 2.1, February 1999.
+#
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
+# conditions of the GNU Lesser General Public License for more details.
+#
+# You should have received a copy of the GNU Lesser General Public
+# License along with this program; if not, write to the Free Software
+# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+##############################################################################
+from spack import *
+
+
+class RGenie3(RPackage):
+    """This package implements the GENIE3 algorithm for inferring gene
+    regulatory networks from expression data."""
+
+    homepage = "https://bioconductor.org/packages/GENIE3/"
+
+    version('1.2.0', git='https://git.bioconductor.org/packages/GENIE3',
+            commit='cafe6a1a85095cda6cc3c812eb6f53501fcbaf93')
+
+    depends_on('r-reshape2', type=('build', 'run'))
+    depends_on('r@3.5.0:', when='@1.2.0')