pism: new package (#8010)
* pism: new package * Implement code review * Remove pointless docstring5 * Fixed missing trailing quote
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Elizabeth Fischer
Adam J. Stewart
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1 changed files with 171 additions and 0 deletions
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var/spack/repos/builtin/packages/pism/package.py
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var/spack/repos/builtin/packages/pism/package.py
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##############################################################################
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# Copyright (c) 2013-2018, Lawrence Livermore National Security, LLC.
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# Produced at the Lawrence Livermore National Laboratory.
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#
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# This file is part of Spack.
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# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
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# LLNL-CODE-647188
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#
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# For details, see https://github.com/spack/spack
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# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
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#
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# This program is free software; you can redistribute it and/or modify
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# it under the terms of the GNU Lesser General Public License (as
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# published by the Free Software Foundation) version 2.1, February 1999.
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#
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# This program is distributed in the hope that it will be useful, but
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# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
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# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
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# conditions of the GNU Lesser General Public License for more details.
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#
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# You should have received a copy of the GNU Lesser General Public
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# License along with this program; if not, write to the Free Software
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# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
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##############################################################################
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from spack import *
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class Pism(CMakePackage):
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"""Parallel Ice Sheet Model"""
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homepage = "http://pism-docs.org/wiki/doku.php:="
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url = "https://github.com/pism/pism/archive/v0.7.3.tar.gz"
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maintainers = ['citibeth']
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version('0.7.3', '7cfb034100d99d5c313c4ac06b7f17b6')
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version('0.7.x', git='https://github.com/pism/pism.git',
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branch='stable0.7')
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version('icebin', git='https://github.com/pism/pism.git',
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branch='efischer/dev')
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version('develop', git='https://github.com/pism/pism.git',
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branch='dev')
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variant('extra', default=False,
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description='Build extra executables (testing/verification)')
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variant('shared', default=True,
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description='Build shared Pism libraries')
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variant('python', default=False,
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description='Build python bindings')
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variant('icebin', default=False,
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description='Build classes needed by IceBin')
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variant('proj', default=True,
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description='Use Proj.4 to compute cell areas, '
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'longitudes, and latitudes.')
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variant('parallel-netcdf4', default=False,
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description='Enables parallel NetCDF-4 I/O.')
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variant('parallel-netcdf3', default=False,
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description='Enables parallel NetCDF-3 I/O using PnetCDF.')
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variant('parallel-hdf5', default=False,
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description='Enables parallel HDF5 I/O.')
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# variant('tao', default=False,
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# description='Use TAO in inverse solvers.')
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description = 'Build PISM documentation (requires LaTeX and Doxygen)'
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variant('doc', default=False, description=description)
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variant('examples', default=False,
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description='Install examples directory')
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description = 'Report errors through Everytrace (requires Everytrace)'
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variant('everytrace', default=False, description=description)
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# CMake build options not transferred to Spack variants
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# (except from CMakeLists.txt)
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#
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# option (Pism_TEST_USING_VALGRIND "Add extra regression tests
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# using valgrind" OFF)
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# mark_as_advanced (Pism_TEST_USING_VALGRIND)
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#
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# option (Pism_ADD_FPIC "Add -fPIC to C++ compiler flags
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# (CMAKE_CXX_FLAGS). Try turning it off if it does not work." ON)
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# option (Pism_LINK_STATICALLY
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# "Set CMake flags to try to ensure that everything is
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# linked statically")
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# option (Pism_LOOK_FOR_LIBRARIES
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# "Specifies whether PISM should look for libraries. (Disable
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# this on Crays.)" ON)
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# option (Pism_USE_TR1
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# "Use the std::tr1 namespace to access shared pointer
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# definitions. Disable to get shared pointers from the std
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# namespace (might be needed with some compilers)." ON)
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# option (Pism_USE_TAO "Use TAO in inverse solvers." OFF)
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depends_on('fftw')
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depends_on('gsl')
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depends_on('mpi')
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depends_on('netcdf') # Only the C interface is used, no netcdf-cxx4
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depends_on('petsc')
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depends_on('udunits2')
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depends_on('proj')
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depends_on('everytrace', when='+everytrace')
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extends('python', when='+python')
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depends_on('python@2.7:2.8', when='+python')
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depends_on('py-matplotlib', when='+python')
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depends_on('py-numpy', when='+python')
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def cmake_args(self):
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spec = self.spec
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return [
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'-DCMAKE_C_COMPILER=%s' % spec['mpi'].mpicc,
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'-DCMAKE_CXX_COMPILER=%s' % spec['mpi'].mpicxx,
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# Fortran not needed for PISM...
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# '-DCMAKE_Fortran_COMPILER=%s' % spec['mpi'].mpifc,
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'-DPism_BUILD_EXTRA_EXECS=%s' %
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('YES' if '+extra' in spec else 'NO'),
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'-DBUILD_SHARED_LIBS=%s' %
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('YES' if '+shared' in spec else 'NO'),
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'-DPism_BUILD_PYTHON_BINDINGS=%s' %
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('YES' if '+python' in spec else 'NO'),
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'-DPism_BUILD_ICEBIN=%s' %
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('YES' if '+icebin' in spec else 'NO'),
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'-DPism_USE_PROJ4=%s' %
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('YES' if '+proj' in spec else 'NO'),
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'-DPism_USE_PARALLEL_NETCDF4=%s' %
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('YES' if '+parallel-netcdf4' in spec else 'NO'),
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'-DPism_USE_PNETCDF=%s' %
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('YES' if '+parallel-netcdf3' in spec else 'NO'),
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'-DPism_USE_PARALLEL_HDF5=%s' %
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('YES' if '+parallel-hdf5' in spec else 'NO'),
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'-DPism_BUILD_PDFS=%s' %
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('YES' if '+doc' in spec else 'NO'),
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'-DPism_INSTALL_EXAMPLES=%s' %
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('YES' if '+examples' in spec else 'NO'),
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'-DPism_USE_EVERYTRACE=%s' %
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('YES' if '+everytrace' in spec else 'NO')]
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def setup_environment(self, spack_env, env):
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env.set('PISM_PREFIX', self.prefix)
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env.set('PISM_BIN', self.prefix.bin)
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# From email correspondence with Constantine Khroulev:
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#
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# > Do you have handy a table of which versions of PETSc are required
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# > for which versions of PISM?
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#
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# We don't. The installation manual [1] specifies the minimum PETSc
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# version for the latest "stable" release (currently PETSc 3.3). The
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# stable PISM version should support all PETSc versions starting from the
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# one specified in the manual and up to the latest PETSc release.
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#
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# The current development PISM version should be built with the latest
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# PETSc release at the time (the "maint" branch of PETSc).
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#
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# Thanks to Git it is relatively easy to find this info, though:
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#
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# | PISM version | PETSc version |
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# |--------------+---------------|
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# | 0.7 | 3.3 and later |
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# | 0.6 | 3.3 |
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# | new_bc | 3.4.4 |
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# | 0.5 | 3.2 |
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# | 0.4 | 3.1 |
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# | 0.3 | 2.3.3 to 3.1 |
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# | 0.2 | 2.3.3 to 3.0 |
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# | 0.1 | 2.3.3-p2 |
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