Commit graph

32079 commits

Author SHA1 Message Date
eugeneswalker
cceeb96e06
new package: py-amityping (#37262) 2023-04-28 13:51:52 -05:00
Alec Scott
7853ffc881
libmaxminddb: add v1.7.1 (#37185) 2023-04-28 11:08:21 -07:00
Victor Brunini
4363b1c2dc
superlu-dist: do not discard cflags from Spack (#37260)
Make sure to append additional flags needed for specific compilers
in the flag_handler instead of adding them as separate cmake define
lines that override the main spack cflags.
2023-04-28 09:37:58 -04:00
Harmen Stoppels
c85877566f
Reduce the number of stat calls in "spack verify" (#37251)
Spack comes to a crawl post-install of nvhpc, which is partly thanks to
this post install hook which has a lot of redundancy, and isn't correct.

1. There's no need to store "type" because that _is_ "mode".
2. There are more file types than "symlink", "dir", "file".
3. Don't checksum device type things
4. Don't run 3 stat calls (exists, stat, isdir/islink), but one lstat
   call
5. Don't read entire files into memory

I also don't know why `spack.crypto` wasn't used for checksumming, but I
guess it's too late for that now. Finally md5 would've been the faster
algorithm, which would've been fine given that a non cryptographicall
checksum was used anyways.
2023-04-28 13:24:24 +00:00
dale-mittleman
fc201a2b75
Fixing patch version constraint for llvm external ncurses patch (#37145) 2023-04-28 15:10:03 +02:00
Massimiliano Culpo
ddd191b1c0
libxml2: fix test method (#37242)
This was discovered using #34236
2023-04-28 13:45:16 +02:00
eugeneswalker
fec20bb567
new package: roentdek (#37265) 2023-04-28 04:35:56 -07:00
eugeneswalker
63869bba47
new package: py-pyabel (#37264) 2023-04-28 04:31:18 -07:00
eugeneswalker
eacf11e6cc
new package: xtcdata (#37261) 2023-04-28 04:31:06 -07:00
snehring
7bd987aa5b
sentieon-genomics: adding new version 20211207. (#37223) 2023-04-28 12:33:22 +02:00
Jonathon Anderson
cba8d1253d
Add container images supporting RHEL alternatives (#36713)
Add container support for AlmaLinux, Fedora 37 and 38 and Rocky Linux
2023-04-28 12:28:33 +02:00
Andrew W Elble
c87cc5c7b1
kicad: new version 7.0.2 (#37228) 2023-04-28 12:25:28 +02:00
Richard Berger
4a7893bed6
slurm: add version 22-05-8-1 and 23-02-1-1 (#37238) 2023-04-28 12:24:10 +02:00
Adam J. Stewart
44196085f6
py-psycopg2: add v2.9.6 (#37235) 2023-04-28 11:50:27 +02:00
John Jolly
076660804d
bricks: Fix package to properly find spack opencl-clhpp (#37239)
The bricks package uses header from the opencl-clhpp package when built with
the cuda variant activated. In order to find the header files, the bricks
CMakeLists.txt uses the `find_package(OpenCL 2.0)` statement. The CMake
FindOpenCL module searches several paths to find the header files. Eventually
it will search for header files in the local /usr/include directories. If
OpenCL headers are found, but CUDA is not installed locally, then the build
will fail.

One of the CMake variables searched for a path to the OpenCL headers is
OCL_ROOT. This fix utilizes the OCL_ROOT variable to identify the correct path
to the install opencl-clhpp package within Spack. Also, if the cuda variant is
not used, then the OpenCL build is disabled to prevent a build failure due to
improperly-identified locally-installed OpenCL header files.

The default behavior of the build process has not changed. An external variable
definitions must be made to activate these features. Specifically, to disable
the OpenCL build, this flag must be provided to CMake:

    -DBRICK_USE_OPENCL=OFF

The Spack build process explicitly uses this option unless the cuda variant is
specified. If the cuda variant is specified, then the BRICK_USE_OPENCL variable
is set to ON and the OCL_ROOT variable is set to the path of the opencl-clhpp
include directory.
2023-04-28 11:37:22 +02:00
Alec Scott
e57db5c528
apfel: add v3.0.6 (#37267) 2023-04-28 11:18:05 +02:00
Alec Scott
01cdc4f960
cmor: add v3.7.2 (#37268) 2023-04-28 11:17:44 +02:00
Alec Scott
93e88853c6
figtree: add v1.4.4 (#37269) 2023-04-28 11:17:31 +02:00
Alec Scott
561c192e30
fping: add v5.1 (#37270) 2023-04-28 11:17:16 +02:00
Alec Scott
65c625a44f
gapbs: add v1.4 (#37271) 2023-04-28 11:16:55 +02:00
Alec Scott
08291cb63d
glfw: add v3.3.8 (#37272) 2023-04-28 11:16:41 +02:00
Alec Scott
dcd0f8d252
jemalloc: add v5.3.0 (#37273) 2023-04-28 11:14:12 +02:00
Alec Scott
fa0367691e
sandbox: add v2.25 (#37274) 2023-04-28 11:13:56 +02:00
Alec Scott
e3a76bf2a9
snap-berkeley: add v2.0.3 (#37275) 2023-04-28 11:13:39 +02:00
Alec Scott
e2f9cdfbdc
tcpdump: add v4.99.4 (#37276) 2023-04-28 11:13:22 +02:00
Alec Scott
1eb4e30d28
wps: add v4.5 (#37277) 2023-04-28 11:12:28 +02:00
Sangu Mbekelu
2f529a7320
py-subword-nmt (#37161)
* "new py-subword-nmt package"

* [@spackbot] updating style on behalf of Sangu-Mbekelu

* Update package.py

updating package based on review

* [@spackbot] updating style on behalf of Sangu-Mbekelu

---------

Co-authored-by: Sangu Mbekelu <s.mbekelu9@gmail.com>
2023-04-28 00:22:45 -04:00
Manuela Kuhn
cb4234b971
py-virtualenv: add 20.22.0 (#37259)
* py-virtualenv: add 20.22.0

* [@spackbot] updating style on behalf of manuelakuhn

* Fix dependency versions for release 20.22.0

* Remove python version restrictions

* [@spackbot] updating style on behalf of manuelakuhn

* py-platformdirs: add 3.5.0

* py-filelock: add 3.12.0

* Fix dependency bound for py-platformdirs

* py-importlib-metadata: add 6.6.0
2023-04-27 22:28:18 -05:00
Adam J. Stewart
ee7cdb8a68
macOS: use Apple GL/GLU by default (#36618)
* macOS: use Apple GL/GLU by default

* Use CLT instead

* Use CLT instead

* Undo change to libuuid
2023-04-27 21:54:48 -05:00
eugeneswalker
7dc0bf5fcb
legion: add versions up to 23.03.0 (#37257)
* legion: add versions up to 23.03.0

* add maintainer
2023-04-27 19:17:42 -04:00
Chris Green
d01b542df7
[py-breathe] New version 4.35.0 (#37233)
* [py-breathe] New version 4.35.0

* Update var/spack/repos/builtin/packages/py-breathe/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

---------

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-04-27 13:57:31 -04:00
Thomas-Ulrich
c59eb8cdea
fixes #29350 by enabling headers variant in binutils when compiling llvm with gold (#37245) 2023-04-27 09:53:45 -07:00
Manuela Kuhn
ed34c4a004
py-memory-profiler: add 0.61.0 (#37248) 2023-04-27 11:38:08 -05:00
Chris Green
7cbaf2ff56
[py-sphinx-design] New versions 0.4.0, 0.4.1 (#37234)
* [py-sphinx-design] New versions 0.4.0, 0.4.1

* conflicts() -> depends_on()

Per @adamjstewart

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

---------

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-04-27 11:37:23 -05:00
Massimiliano Culpo
cd851e173d
gcc: add v13.1.0 (#37230)
version 13.1 builds with apple-clang@14.0.3
2023-04-27 16:41:44 +02:00
Harmen Stoppels
8be2f017e7
gcc: no need to special case macos/linux wrt rpaths (#37243) 2023-04-27 15:52:28 +02:00
Michael Kuhn
f6464abfcb
Fix pkgconfig dependencies (#37236)
Packages shouldn't typically depend on pkg-config or pkgconf but on the
virtual provider pkgconfig.
2023-04-27 10:04:22 +02:00
Alec Scott
ce81f15e6f
r-covr: add v3.6.2 (#37194) 2023-04-27 02:22:29 -04:00
Wouter Deconinck
4d597bdecc
py-gssapi: depends_on krb5 (#37227)
This dependency was somehow overlooked (but is pretty crucial) because it doesn't appear in the python requirements...
2023-04-26 22:35:15 -04:00
Manuela Kuhn
62ea6bed89
py-bidscoin: add 4.0.0 and py-pydeface as new deb package (#37231) 2023-04-26 20:58:57 -04:00
Manuela Kuhn
742fbd458d
py-mypy: add 1.2.0 (#37224) 2023-04-26 20:54:11 -04:00
Manuela Kuhn
10b6651d35
py-flake8: add 6.0.0 and update dependencies (#37222) 2023-04-26 20:53:49 -04:00
Alec Scott
3f3fc804c6
r-afex: add v1.2-1 (#37188) 2023-04-26 19:36:53 -05:00
Alec Scott
c7d586d03a
r-argparse: add v2.2.2 (#37189) 2023-04-26 19:36:11 -05:00
Alec Scott
b17feb9b06
r-bit: add v4.0.5 (#37190) 2023-04-26 19:35:30 -05:00
Alec Scott
2e4a9f1abf
r-loo: add v2.6.0 (#37205)
* r-loo: add v2.6.0

* Split r dependency from other deps to align with common r package style
2023-04-26 19:34:19 -05:00
Alec Scott
117d374a61
r-bookdown: add v0.33 (#37191)
* r-bookdown: add v0.33

* Add r@3.5.0: dependency to package
2023-04-26 19:33:18 -05:00
Alec Scott
67cf37d750
r-compositions: add v2.0-6 (#37192)
* r-compositions: add v2.0-6

* Split r dependecies from other r packages to match common format
2023-04-26 19:32:15 -05:00
Alec Scott
6e276ecb4c
r-convevol: add v2.0.0 (#37193) 2023-04-26 19:31:34 -05:00
Alec Scott
8c6a3f15e5
r-desolve: add v1.35 (#37195) 2023-04-26 19:29:14 -05:00