* Disable module generation by default (#35564)
a) It's used by site administrators, so it's niche
b) If it's used by site administrators, they likely need to modify the config anyhow, so the default config only serves as an example to get started
c) it's too arbitrary to enable tcl, but disable lmod
* Remove leftover from old module file schema
* Warn if module file config is detected and generation is disabled
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Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
Change the signature of the Environment.__init__ method to have
a single argument, i.e. the directory where the environment manifest
is located. Initializing that directory is now delegated to a function
taking care of all the error handling upfront. Environment objects
require a "spack.yaml" to be available to be constructed.
Add a class to manage the environment manifest file. The environment
now delegates to an attribute of that class the responsibility of keeping
track of changes modifying the manifest. This allows simplifying the
updates of the manifest file, and helps keeping in sync the spec lists in
memory with the spack.yaml on disk.
* generax: adding new package generax
* muscle5: adding new package muscle5
* py-custom-inherit: adding new package py-custom-inherit
* py-ete3: adding new package py-ete3
* py-itolapi: adding new package py-itolapi
* py-opentree: adding new package py-opentree
* py-pypng: adding new package py-pypng
* py-toyplot: adding new package py-toyplot
* py-toytree: adding new package py-toytree
* py-pastml: adding new package py-pastml
* raxml-ng: adding new version 1.1.0
* py-topiary: adding new package py-topiary
* generax: adding master branch version
generax: adding version 2.0.1
generax: add mpi variant
* py-topiary: add main
* generax: correcting commit for 2.0.1
* Update var/spack/repos/builtin/packages/py-itolapi/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Update var/spack/repos/builtin/packages/py-opentree/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* py-topiary-asr: rename package, requested changes.
* Update var/spack/repos/builtin/packages/py-topiary-asr/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
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Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
