Commit graph

12365 commits

Author SHA1 Message Date
Julien Loiseau
015ea82bd5
Update FleCSPH package (#17997)
* Update FleCSPH package

* Flake8 corrections

* Update FleCSI version
2020-08-12 11:49:30 -06:00
Robert Blake
b4ff584bc0
Adding externals support for CUDA. (#18011)
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2020-08-12 19:30:57 +02:00
Jon Rood
193c3535e1
Use configure-release instead of configure for UCX (#17941)
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-08-12 15:14:53 +02:00
Michele Martone
d1fae90f84
librsb: added v1.2.0.9 (#18015) 2020-08-12 14:09:49 +02:00
Andrew W Elble
de053ca2ea
weechat: added new package at v2.9 (#17996) 2020-08-12 14:09:09 +02:00
Ethan Stam
12aa6d221c
ParaView: added v5.8.1 (#17995) 2020-08-12 13:18:32 +02:00
Robert Blake
f73141c6af
Bugfix for #17999: use cudart instead of cuda. (#18000)
This is needed because libcuda is used by the driver,
whereas libcudart is used by the runtime. CMake searches
for cudart instead of cuda.

On LLNL LC systems, libcuda is only found in compat and
stubs directories, meaning that the lookup of libraries
fails.
2020-08-12 13:13:57 +02:00
Thomas Madlener
041e21802e
podio: added dependency on jinja2 for newer versions (#17990) 2020-08-12 08:56:11 +02:00
Robert Blake
80a382c218
Adding external recognition to perl (#17756)
* Perl now has external recognition.

* Changing code to use the new external packages API.
2020-08-11 17:06:20 -07:00
Adam J. Stewart
2f0fd44b97
Libtool: add spack external find support (#16691)
* Libtool: add spack external find support

* Less specific regex

* match -> search

* Clarify that min returns first alphabetically, not shortest

* Simplify version determination
2020-08-11 10:16:15 -05:00
Harmen Stoppels
313511bf1d
elpa: add cuda support, add libtool dep, fix parallel build failure (#17969) 2020-08-11 17:01:49 +02:00
Adam J. Stewart
09cc89a449
py-pyinstrument: added v3.1.3 (#17976) 2020-08-11 10:23:10 +02:00
Adam J. Stewart
db3ecb2fdf
py-sphinx: added v3.2.0 (#17977) 2020-08-11 10:22:18 +02:00
Adam J. Stewart
1fdd19bcc2
py-sphinx-rtd-theme: added v0.5.0 (#17978) 2020-08-11 10:21:55 +02:00
darmac
9e54570b4c
libcroco: added build dependency on pkg-config (#17970) 2020-08-11 10:14:22 +02:00
Sajid Ali
30dc0baa34
openssl: added detection capabilities (#16653) 2020-08-11 09:44:51 +02:00
Kurt Sansom
07422f95de
sprng: added new package (#17570)
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-08-11 09:15:13 +02:00
Howard Pritchard
18d2682f75
UCX: add version 1.8.1 (#17972)
Signed-off-by: Howard Pritchard <howardp@lanl.gov>
2020-08-10 23:10:59 -05:00
Jeffrey Salmond
6ccc430e8f
Add fenicsx packages (#17743)
* add py-ufl package from fenics

* add py-fiat package from fenics

* add py-ffcx package from fenics

* add py-dijitso package from fenics

* add dolfinx library from fenics

* amend ffcx to use ufl and fiat master branches

* setup variants complex and int64 of dolfinx

* add dolfinx python library as package

* add test dependencies to py-dolfinx

* remove broken doc variant

* remove test dependencies from py-dolfinx

* flake8 fixes to dolfinx and py-dolfinx

* make sure dolfinx cmake picks up the correct python version

* list build phases in py-dolfinx package

* remove unnecessary package url

* make pkgconf a build dependency

* make all python dependencies build+run

* py-ffcx needs py-setuptools to be a build/run dependency to support ffcx executable

* remove unnecessary variants from dolfinx

* add missing dependencies to py-dijitso

* remove stray line from py-dolfinx

* simplify definition of build_directory in py-dolfinx

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* use depends_on("python") rather than extends("python") in py-ffcx

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* use depends_on("python") rather than extends("python") in py-fiat

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* use depends_on("python") rather than extends("python") in py-ufl

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* rename py-fiat to py-fenics-fiat

* rename py-ufl to py-fenics-ufl

* fix error in depends_on(petsc) definition

* add missing dep on numpy to py-fenics-fiat

* specify python@3.8: as requirement for all fenics components

* use tuples rather than list for depends_on type=

* specify eigen@3.3.7: as dependency for dolfinx

* add js947 and chrisrichardson as maintainers for the fenics packages

* remove scipy dependency from py-dolfinx

* rename package py-ffcx -> py-fenics-ffcx

* rename package dolfinx -> fenics-dolfinx

* rename package py-dolfinx -> py-fenics-dolfinx

* remove pointless URL from py-fenics-dolfinx package

* rename package py-dijitso -> py-fenics-dijitso

* formatting

* remove unecessary cmake args from fenics-dolfinx

* revert py-fenics-fiat python version to 3:

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* revert py-fenics-ufl python version to 3.5:

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* add conflict to fenics-dolfinx for C++17 support

* revert py-fenics-ffcx python version to 3.5:

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-08-10 21:43:43 -05:00
Nithin Senthil Kumar
38f2a0a92b
Updated docstring description for MVAPICH2 (#17921)
* Updated docstring description for MVAPICH2

* Fixed flake8 character count warning and added maintainers

* Removed trailing whitespaces

Co-authored-by: nithintsk <nithintsk@github.com>
2020-08-10 21:35:41 -05:00
darmac
08beb7aa30
aperture-photometry: add v2.8.4 (#17953) 2020-08-10 21:35:20 -05:00
darmac
00bdff81ae
Add new package: tiptop (#17907)
* Add new package: tiptop

* fix flake8 error

* tiptop: remove sha256 value
2020-08-10 21:26:21 -05:00
darmac
84a97d8372
pbbam: fix build error (#17955)
* pbbam: fix build error

* Update var/spack/repos/builtin/packages/pbbam/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-08-10 21:25:45 -05:00
darmac
9fbfd6b58c
kibana: support aarch64 (#17910)
* kibana: support aarch64

* kibana: change jdk to java
2020-08-10 21:25:08 -05:00
darmac
c322bea8f8
fix apex sha256 and depends constraint (#17902) 2020-08-10 20:36:58 -05:00
Massimiliano Culpo
f128e7de54 Removed references to BlueGene/Q in Spack builtin packages 2020-08-10 17:09:09 -07:00
Satish Balay
1920d125e8
petsc: update hypre dependency wrt 2.18.2 -> 2.19.0 API change (#17973) 2020-08-10 13:41:35 -07:00
Massimiliano Culpo
c0d490ffbe Simplify the detection protocol for packages
Packages can implement “detect_version” to support detection
of external instances of a package. This is generally easier
than implementing “determine_spec_details”. The API for
determine_version is similar: for example you can return
“None” to indicate that an executable is not an instance
of a package.

Users may implement a “determine_variants” method for a package.
When doing external detection, executables are grouped by version
and each group results in a single invocation of “determine_variants”
for the associated spec. The method returns a string specifying
the variants for the package. The method may additionally return
a dictionary representing extra attributes for the package.

These will be stored in the spec yaml and can be retrieved
from self.spec.extra_attributes

The Spack GCC package has been updated with an implementation
of “determine_variants” which adds the following extra
attributes to the package: c, cxx, fortran
2020-08-10 11:59:05 -07:00
Massimiliano Culpo
193e8333fa Update packages.yaml format and support configuration updates
The YAML config for paths and modules of external packages has
changed: the new format allows a single spec to load multiple
modules. Spack will automatically convert from the old format
when reading the configs (the updates do not add new essential
properties, so this change in Spack is backwards-compatible).

With this update, Spack cannot modify existing configs/environments
without updating them (e.g. “spack config add” will fail if the
configuration is in a format that predates this PR). The user is
prompted to do this explicitly and commands are provided. All
config scopes can be updated at once. Each environment must be
updated one at a time.
2020-08-10 11:59:05 -07:00
Amjad Kotobi
1398038bee
git: new version 2.28 (#17848)
* git: new version 2.28

* git: man page version 2.28
2020-08-10 07:48:03 -04:00
Brian Van Essen
aa79d565b3
DiHydrogen: adding blas and associated variants (#17911) 2020-08-10 07:31:41 +02:00
darmac
6309c5eff5
Add new package: libhugetlbfs (#17904) 2020-08-09 14:05:28 -05:00
Nichols A. Romero
c015b8538d
LLVM minor cleanup (#17905)
* Since LLVM already depends on the CUDA build system, these lines are redundant.

* This conflict doesn't do anything.
2020-08-09 14:04:53 -05:00
darmac
6c4c7c4b72
libtirpc: fix krb5 depends and remove --disable-gssapi configure (#17926) 2020-08-09 13:52:17 -05:00
darmac
3b8a5dea44
Add new package: hazelcast (#17928) 2020-08-09 13:51:25 -05:00
Rémi Lacroix
ab6e74f6ac
FFTW: "configure" script failed with Intel compilers on some systems. (#17936)
Next version of FFTW won't use `-no-gcc` so add a patch to backport the fix to older versions.

Fixes #17810.
2020-08-09 13:47:26 -05:00
Teodor Nikolov
902fac185a
blaspp: added explicit dependency on CUDA (#17965) 2020-08-09 20:44:05 +02:00
eugeneswalker
bad8734316
add variant tests which can be one of (none, tests, benchmarks) (#17949) 2020-08-09 13:40:46 -05:00
darmac
5965522bbe
libxscrnsaver: fix depends scrnsaverproto error (#17951) 2020-08-09 13:38:55 -05:00
darmac
e0e73c6ea1
blaze: fix build error (#17954) 2020-08-09 13:30:39 -05:00
Alex Margolin
c0492efc11
KNEM and XPMEM support for UCX (#17215)
* KNEM url updated

Signed-off-by: Alex Margolin <alex.margolin@huawei.com>

* Allow UCX to be built against KNEM and XPMEM

Signed-off-by: Alex Margolin <alex.margolin@huawei.com>
2020-08-09 12:55:49 -05:00
Wouter Deconinck
4493d31170
dire: new package at v2.004 (#17749)
Older versions do not compile correctly. New users should use 2.004,
not any of the older versions.

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-08-09 19:03:26 +02:00
Adam J. Stewart
3b6c16ee9f
py-scikit-learn: added v0.23.2 (#17876) 2020-08-09 15:57:07 +02:00
Jordan Ogas
f243291334
charliecloud: added v0.17 (#17855) 2020-08-09 15:55:53 +02:00
Harmen Stoppels
512fa8e460
Fix cpio clang build error (#17963)
undefined reference to '__muloti4', using the proposed fix from
https://bugs.llvm.org/show_bug.cgi?id=16404
2020-08-09 15:45:53 +02:00
ketsubouchi
0642216c31
eospac: added support for fujitsu compiler (#17922) 2020-08-09 15:45:35 +02:00
Cameron Stanavige
7631013975
unifyfs: remove flatcc dependency and add spath (#17913)
FlatCC has been removed from UnifyFS as a dependency on the develop
branch and for future releases.

spath is now an optional dependency for UnifyFS to normalize relative
paths provided by the user.
2020-08-09 15:14:44 +02:00
ketsubouchi
c6ad321838
r-rcppparallel: fix for fujitsu compiler (#17924) 2020-08-09 15:01:19 +02:00
vvolkl
e83f639c13
HEP versions update (#17927)
* [whizard] bug fix for ~openloops

* [lcio] new version

* [gaudi] new version

* [lcio] add delphes dependency for examples
2020-08-09 14:54:26 +02:00
Dr. Christian Tacke
dfd5da85c3
pythia8: added v8302 and maintainer (#17931) 2020-08-09 14:43:47 +02:00
Rémi Lacroix
9979aa28ce
hypre: added v2.19.0 (#17809) 2020-08-09 14:42:52 +02:00
Adam J. Stewart
eda170665f
oneDNN: added v1.6 and v1.6.1 (#17822) 2020-08-09 14:40:05 +02:00
Adam J. Stewart
33ec8cd86a
py-azureml-sdk: add v1.11.0 (and deps) (#17939) 2020-08-09 14:31:28 +02:00
Sinan
f340b81ca8
py-netket: added new package at v2.1.1 (#17515)
Co-authored-by: Sinan81 <sbulut@3vgeomatics.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-08-09 14:05:26 +02:00
Brian Van Essen
1fc02b801e
cub: added v1.9.10, fixed typo in url (#17942) 2020-08-09 13:59:42 +02:00
Glenn Johnson
8eef488e2c
Replace [] with () in description (#17940)
The tcl module for r-dorng will fail to load due to the [] characters in
the description. This happens for Tcl formatted modules loaded by Lmod
at least.

```
module load r-dorng-1.7.1-gcc-9.2.0-wtq7bne
Lmod has detected the following error: .../spack/share/spack/modules/linux-centos7-broadwell/r-dorng-1.7.1-gcc-9.2.0-wtq7bne:(r-dorng-1.7.1-gcc-9.2.0-wtq7bne):
invalid command name "L'Ecuyer"
```

Split text for short and long descriptions.
2020-08-09 13:54:28 +02:00
Adam J. Stewart
a3a571e5c3
PIL: add py-pillow 7.2.0 (#17933) 2020-08-09 13:43:29 +02:00
Sinan
d7ae244a14
llvm: added v10.0.1 (#17950)
Co-authored-by: Sinan81 <sbulut@3vgeomatics.com>
2020-08-09 13:39:11 +02:00
Adam J. Stewart
09223e5c0b
wcslib: added v7.3 (#17836) 2020-08-09 13:24:48 +02:00
Satish Balay
61735f3847
petsc: added v3.13.2,v3.13.3,v3.13.4 (#17957) 2020-08-09 13:19:59 +02:00
Adam J. Stewart
aa14c9d1d1
libimagequant: added new package at v2.12.6 (#17959) 2020-08-09 13:09:52 +02:00
Satish Balay
2954eb39c9
saws: added v0.1.1 (#17958) 2020-08-09 13:05:21 +02:00
Mark W. Krentel
cef729e39c
mbedtls: fix min cmake version, added v2.16.7 (#17960)
Mbedtls 2.16.x uses target_sources() from cmake >= 3.1.0
2020-08-09 12:52:21 +02:00
Daniel Topa
61cf6d9c8f
cassandra: fixed checksum for v3.11.6 (#17961)
Signed-off-by: Daniel Topa <dantopa@gmail.com>
2020-08-09 12:47:03 +02:00
Glenn Johnson
023a057f20
Add variants to petsc (#17218)
* Add variants to petsc

This PR adds the follolwing variants to the petsc package

- gmp
- jpeg
- libpng
- giflib
- mpfr
- netcdf
- pnetcdf (parallel-netcdf)
- moab
- eigen
- random123
- exodusii
- mstk
- cgns
- memkind
- muparser
- p4est
- saws
- libyaml
- zstd

* Fix flake8 errors

* Additional changes to Petsc recipe

This commit addresses the issues with dependencies that were brought up
in the comments. There are also a few other enhancements.

- the language of the new variant descriptions was changed to be more
  consistent with what was already in the recipe
- an explicit '+mpi' was added to the depends_on('hypre...') directives
- an explicit '+mpi' was added to the depends_on('trilinos...')
  directives
- the run time error checking for '~mpi' was replaced with 'conflicts()'
  directives that will cause the install to fail sooner
- additional variants that were 'parallel only' were added to the '~mpi'
  check

* Set the '~mpi`' conflicts msg to a variable
2020-08-08 11:07:51 -05:00
Sinan
e4a7cb4d60
new package: py-cmake (#17588)
* new package: py_cmake

* sync cmake and py-cmake versions

* new package: py_cmake

* sync cmake and py-cmake versions

* flake8, improve dependency specifics

* replace template stuff with actual values

Co-authored-by: Sinan81 <sbulut@3vgeomatics.com>
2020-08-08 11:04:41 -05:00
Adrien Bernede
3978db91dc
Feature/raja chai umpire update (#17665)
* Changing raja, chai, and umpire packages so all will compile with each other.

* Need a CUDA version of CHAI when compiling with raja+cuda+chai

* Updating checks for commit.

* Adding comments explaining why chai+umpire tests were disabled

* Reactivating tests for CHAI and Umpire

* reordering versions

* Unified handling of Cuda Arch

* Adding latest versions

* Unused/Untested: removed

* Aesthetic and test mode in Chai

* Unified handling of Cuda Arch

* Using 'ON' consistently, instead of 'On'

* Apply suggestions from code review

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Fix, suggestion and patch:

Chai depends on RAJA, not the other way.
Apply suggested master-main version mapping.
Add Umpire version 3.0.0 and patch.

Co-authored-by: Robert Blake <blake14@llnl.gov>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-08-07 17:42:07 -05:00
eugeneswalker
ceed9c4bc0
conduit: dont use cmake >= 3.18 because of FindHDF5 bug (#17937) 2020-08-07 13:50:14 -07:00
Glenn Johnson
1a11449c86
New package - REDItools (#17703)
* New package - REDItools

This PR adds the REDItools package, along with a new package dependency,
py-fisher. This contains a patch generated from the python 2to3 script
as well as some other fixes. I am not sure if the project is ready to
support python-3 yet but I submitted the other patches upstream.

* Update var/spack/repos/builtin/packages/reditools/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-08-07 14:40:52 -05:00
Adam J. Stewart
11f2d01051
py-inference-schema: add new package (#17912) 2020-08-07 12:09:34 -05:00
g-mathias
c1efa09928
gromacs: new version 2020.3; variant nosuffix and mkl support (#17908)
* new version 2020.3; new variants nosuffix and fft; version selections for plumed

* fixed too long lines

* fixed whitespaces

* revised fft interface according to @haampie 's suggestions

Co-authored-by: lu64bag3 <gerald.mathias@lrz.de>
2020-08-07 07:03:14 -06:00
darmac
6fc6f1ea9d
activeharmony: add version 4.6.0 (#17867) 2020-08-06 23:51:47 -07:00
Adam J. Stewart
463aaef092 py-rasterio: add v1.1.5 2020-08-06 23:50:02 -07:00
Robert Pavel
07e426ce00
New package: ProfugusMC (#17914)
Added spackage for profugusMC
2020-08-06 23:45:19 -07:00
Mark W. Krentel
7d348268fb
hpctoolkit: fix commit hash for version 2020.08.03 (#17920) 2020-08-06 23:42:52 -07:00
Rao Garimella
cff383802a
Wonton (package): Fix sha 256 sum for version (#17916) 2020-08-06 23:41:48 -07:00
Justin S
7a5c0e0326
stacks (package): add version 2.53 (#17915) 2020-08-06 23:40:41 -07:00
Justin S
0f8ad5be1b
isescan: new package at 1.7.2.1 (#16589)
* isescan: new package at 1.7.2.1

* isescan: update external program paths

* isescan: use spack compiler
2020-08-06 22:26:52 -05:00
Rao Garimella
9a7834949d
New Package Wonton (#17882)
* new package Wonton

* remove the flecsi variant because flecsi-sp does not have a spackage

* fix url, clean up whitespaces

* formatting

* put in explicit else clauses for variants in CMake section because CMake's behavior is system-dependent

Co-authored-by: Rao Garimella <rao@abyzou.lanl.gov>
2020-08-06 13:55:24 -05:00
Adam J. Stewart
051e124533
Bazel: relax Java dependency (#17734)
* Bazel: relax Java dependency

* Flake8 fix
2020-08-06 13:02:02 -04:00
Julius-Plehn
f3ec1d445d
New package: HDFView (#17707)
* HDFView

* adds support for version 3.1.1
2020-08-06 09:02:40 -05:00
Robert Mijakovic
aee95fe9a9
GPI-2 new package (#17875)
* update version: intel packages daal, ipp, mkl-dnn, mkl, mpi, parallel-studio, pin, tbb and makes url parameter consistent and always use single quote.

* Fixes a typo with one of the sha256 checksum..

* Adds version entries for new versions of Intel packages.

* Adds hashes for new versions of Intel packages.

* Adds missing hash of Intel compiler.

* Adds the newest version of Intel MPI 2019.8.

* Fixes hash for intel-parallel-studio and intel-tbb.

* Fixes version number of Intel MPI.

* Adds GPI-2 package.

* Fixes flake8 noticed issues.

* Second try to fix flake8 comment

* Fixes some issues adamjstewart noticed.

* Fixes package according to flake8 complains.

* Fixes flake8 issue.

* Renames next version to master and removes master.

* Adds maintainer into gpi-2 and returns master branch for the git
repository.

Co-authored-by: Robert Mijakovic <robert.mijakovic@lrz.de>
2020-08-05 16:38:23 -05:00
carlabguillen
cc0a1283c4
Variant with fortran for likwid package (#17889)
* Option to build likwid with fortran interface

* Removing white spaces

* Flake8 conform
2020-08-05 16:31:49 -05:00
h-denpo
a5914cecb4
add depends_on('zlib', type='link') (#17887) 2020-08-05 16:24:49 -05:00
darmac
dc321abb72
bcache:add pkg-config to find blkid.h in linux-utils (#17888) 2020-08-05 16:24:14 -05:00
Greg Becker
acfa2ea018
remove hypre variant from mfem and all references to it (#17885) 2020-08-05 09:19:22 -07:00
darmac
afaae70855
nodejs: add version 8.11.4 (#17824)
* nodejs: add version 8.11.4

* node-js: refine configure() for different version
2020-08-05 10:12:14 -05:00
Ronak Buch
e64e600fbb
charmpp: added v6.10.2 (#17886) 2020-08-05 15:03:51 +02:00
Jen Herting
96f5075eb1
[py-smart-open] fixing dependencies (#17640)
* version 1.8.4 requires py-boto at 2.3.2:
* google-cloud-storage only in newer versions
2020-08-04 16:44:30 -07:00
Jen Herting
118948cb0a
[bowtie] added version 1.3.0. Patch fixed for new version (#17744) 2020-08-04 14:52:51 -07:00
Tim Haines
f9ee76a817
Dyninst: 10.2 release (#17847)
* Dyninst: 10.2 release

* Use 'elf' instead of 'elfutils'

* Use v10.2.0 tag

* Change minimum elfutils to 0.173

* Move STERILE_BUILD option to correct cmake_args

* make a sacrifice to the flake8 gods

* Add maintainer

* Revert to using elf@1 for elfutils
2020-08-04 13:48:08 -05:00
Brian Van Essen
54dc871524
Renamed the aluminum variant for thhe intra-node RMA functions. (#17861) 2020-08-04 12:52:59 -05:00
Ethan Stam
b3dd90b95c
ParaView: Allow all ParaView versions to depend on Python 2 (#17484)
* Allow all ParaView versions to depend on Python 2

* Keep conflict for 5.9 and up with python 2

* Fix line too long

* Don't use backslash

* Try fixing indent

* Clean logic for python cmake flags

* Try fixing indent
2020-08-04 12:51:49 -05:00
Toyohisa Kameyama
d77f388a0d
yorick: avoid hang to fputest on aarch64. (#17865) 2020-08-04 12:27:27 -05:00
Simon Frasch
cb676eab0f
Added new package: spla (#17868) 2020-08-04 12:24:07 -05:00
Robert Underwood
4eb3558d20
Prefer dynamic linking for Python in vim when +python (#17870)
Previously the python package for vim used static linking, and depending
on what system libraries were available and linked against could cause
symbol conflicts for python leading to segfaults in loading c modules in
the standard library (i.e. heapq).  This patch address this issue by
dynamically linking them.
2020-08-04 12:22:53 -05:00
Robert Underwood
b35b950ee2
Add openssh runtime dependency to git (#17872)
If you use git to clone a repository ssh, git transfers control the ssh
binary available on your path, if that ssh binary was built with
contradictory version of openssl/kerberos, then your git commands will
fail.
2020-08-04 12:21:55 -05:00
Adam J. Stewart
91671be7cc
py-keras-preprocessing: add new version (#17735) 2020-08-04 12:12:15 -05:00
t-nojiri
8977f7377a
abyss 2.1.4: fails to build with GCC 8 (#17614)
* abyss 2.1.4: fails to build with GCC 8

* abyss 2.1.4: fails to build with GCC 8

* abyss 2.1.4: Revise the points indicated by the review.
2020-08-04 12:11:52 -05:00
vvolkl
9d2b60ac0c
[delphes] pythia8 variant and cleanup (#17664)
* [delphes] new version

* [delphes] pythia8 variant

* [delphes] flake8
2020-08-04 12:11:13 -05:00
Zicklag
b85cc363c1
Add Espanso Package and its xdotool Dependency (#17586) 2020-08-04 12:06:46 -05:00
Simon Pintarelli
c3a38e0b14
sirius (new versions, fixes), q-e-sirius (new package), nlcglib (new package) (#17844)
* sirius, update versions, fixes, add missing options

- sirius/spfft: depend on fftw-api
- cleanup +shared option
- sirius add option for memory pool
- sirius add version 6.5.3 and 6.5.4
- sirius: add spfft dependency for @master, @develop

* add nlcglib package

Robust wave function optimization for SIRIUS.

* add q-e-sirius package

based on q-e package

* Update var/spack/repos/builtin/packages/q-e-sirius/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* nlcglib: pass nvcc_wrapper to cmake

* Add 6.5.6

* Make flake8 happy

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
2020-08-04 12:03:04 -05:00
Mark W. Krentel
3a02d1a847
hpctoolkit: add v2020.08.03 (#17860)
Add version 2020.08.03.  Adjust the cuda args.  The --with-cupti arg
was redundant, even for old versions of hpctoolkit.
2020-08-04 13:39:47 +02:00
Enrico Usai
bd0fb35ff0
AWS ParallelCluster: added v2.8.1 (#17866) 2020-08-04 13:25:27 +02:00
Brian Van Essen
c203898663
Added versions for cuDNN 8.0.2. (#17862) 2020-08-04 13:05:29 +02:00
t-nojiri
23f61ae2b0
subread: extend support for aarch64 to v2.0.0 (#17864) 2020-08-04 13:01:39 +02:00
g-mathias
9c8d4be569
new plumed versions 2.5.5 and 2.6.1; bumped default to 2.5.5 (#17850)
Co-authored-by: lu64bag3 <gerald.mathias@lrz.de>
2020-08-03 23:15:57 -05:00
albestro
7154351860
HPX: fix wrong method name and use define/define_from_variant methods (#17851)
* bug fix: wrong method name

* refactoring using define_from_variant and define

* flake8 style fix

* revert change string format
2020-08-03 23:15:23 -05:00
Harmen Stoppels
9318029b63
Bump cmake (#17852) 2020-08-03 23:12:07 -05:00
mic84
1c4b6bad43
amrex:: new version 20.08 (#17856) 2020-08-03 23:08:42 -05:00
darmac
8e1e3ac8c3
canu: fix depends issue & using java instead of jdk (#17599)
* canu: fix depends issue & using java instead of jdk

* Update var/spack/repos/builtin/packages/canu/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-08-03 23:05:37 -05:00
darmac
a7f1565efb
Add new package: ycsb (#17788)
* Add new package: ycsb

* refine mongodb-async-driver jar path
2020-08-03 23:04:48 -05:00
darmac
1884822b56
Add new package: slider (#17799)
* Add new package: slider

* refine version check
2020-08-03 23:04:09 -05:00
darmac
0cc2377de6
Add new package: giraph (#17790)
* Add new package: giraph

* refine version check
2020-08-03 23:03:25 -05:00
Claire Guilbaud
ce7aefbb4f
Packages/py colorspacious (#17623)
* typo error correction

* Adding recipe for `colorspacious` (a python package)

* Copyright year changed

* revert last commit on basic_usage.rst

* better with a good description

* fix according to failed test

* Update var/spack/repos/builtin/packages/py-colorspacious/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/py-colorspacious/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-08-03 23:01:03 -05:00
Adam J. Stewart
a67a0e3181
py-astropy: add version 4.0.1.post1, update header finding (#17838)
* Add install tests
* Add pkgconfig dependency to find dependency headers (specifically
  wcslib)
2020-08-03 11:51:29 -07:00
Adam J. Stewart
8b50433cd7
ERFA (package): add version 1.7.0 (#17837) 2020-08-03 11:40:50 -07:00
Paul
4c97a0ea1c
Added Go 1.14.6 and 1.13.14 (#17574) 2020-08-03 09:42:05 -05:00
ketsubouchi
a480507a92
python: RPATH on fj (#17783)
* python: RPATH on fj

* python: patch _is_gcc
2020-08-02 22:53:14 -05:00
Francesco Di Natale
ac433134e5
Updates to jsonschema to include newer versions. (#17613)
* Additional versions of py-jsonschema.

* Tweak to force Maestro to use jsonschema@3.2.0:

* Correction of whitespace (flake8 error).

* Merges importlib's Python  version conditons

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-08-02 19:42:56 -05:00
Harmen Stoppels
e199f3f245
Add new versions of spfft (#17841)
* Add new versions of spfft

* Extend CudaPackage and use virtual fftw package

Co-authored-by: Simon Pintarelli <simon.pintarelli@cscs.ch>

* Add CUDA 11 compatibility note

* Depend on older cuda <= 10 for spfft <= 0.9.11

Co-authored-by: Simon Pintarelli <simon.pintarelli@cscs.ch>
2020-08-02 19:42:07 -05:00
René Widera
d560d83b76
fix isaac-server dependency (#17569)
isaac-server can not find jansson if jansson2.10+ is used.
2020-08-02 19:41:18 -05:00
Jon Rood
041fcbfa59
Gnuplot also depends on libsm with +wx. (#17575) 2020-08-02 16:46:42 -05:00
darmac
53b7f381c7
krb5: fix url parse and update versions (#17581) 2020-08-02 16:46:04 -05:00
darmac
044b9d3e85
mariadb: add depends package krb5 (#17583) 2020-08-02 16:45:05 -05:00
Harsh Bhatia
b25055c7e8
new package: ibm databroker (#17591) 2020-08-02 16:40:44 -05:00
Patrick Gartung
f29dd48101 Add bindist tests for macOS. 2020-08-02 13:51:14 -07:00
albestro
ef3338a49b
Improve HPX package management of coroutines implementation (#17654)
* introduce logic for boost+context dependency and generic_context variant

* fix OTF2 instrumentation minor problem

* default coroutine impl depends on platform

* fix flake8

* add reference to ~generic_coroutines conflict info

* Update var/spack/repos/builtin/packages/hpx/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-08-02 09:56:50 -05:00
Rémi Lacroix
8e6fe883eb
Octopus: Add support for version 10.0. (#17782)
* Octopus: Add support for version 10.0.

Fix compilation when using the MKL as a provider for BLAS/LAPACK. Octopus will now detect that the MKL also provides the FFTW API and will refuse to compile when both the FFTW library and the MKL are given to the configure script.

* Octopus: Add supported version range for libxc.
2020-08-02 09:55:08 -05:00
Todd Gamblin
b94a837760
berkeley-db: add version 18.1.40, update build options in package (#17839)
* berkeley-db: add version 18.1.40, update build options in package

* combine adamjstewart's changes

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-08-01 19:33:35 -05:00
Wouter Deconinck
7e6a77d907
New package: kassiopeia (#17742)
* [kassiopeia] New package

* [kassiopeia] Remove master branch, update dependencies

* Update var/spack/repos/builtin/packages/kassiopeia/package.py

Unable to test since I do not have a license to intel-parallel-studio, but I see no reason why it would not work if.

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* [kassiopeia] depends_on mpi

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* [kassiopeia] cmake_args with self.spec.satisfies and elses

* [kassiopeia] args.extend -> args.append

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-08-01 17:40:21 -05:00
Simon Pintarelli
75f34126fc
h5py does not correctly recognize hdf5 version on Cray (#17831)
* h5py: explicitly specify version

hdf5@1.10.5 on Cray is wrongly detected as 1.8.4.

* Update var/spack/repos/builtin/packages/py-h5py/package.py

Thanks. Also had this first, then CI was complaining about line length ...

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-08-01 16:26:41 -05:00
Mark W. Krentel
b0eb771b19
elfutils: add version 0.180 (#17835) 2020-08-01 16:26:13 -05:00
Axel Huebl
7498336f3d
Hotfix: move CUDAHOSTCXX (#17826)
* Hotfix: move CUDAHOSTCXX

Set only in dependent packages.

* dependent compiler
2020-08-01 15:29:17 -05:00
darmac
3ea9b9a014
Add new package: findbugs (#17825) 2020-08-01 11:46:02 -05:00
darmac
52858be668
Openfst: upgrade version and gcc constraint (#17830)
* openfst: upgrade version and gcc constraint

* refine version format
2020-08-01 11:41:12 -05:00
Brian Van Essen
5c2b34e43b
cuDNN (package): add version 7.6.5.32-10.2-linux-ppc64le (#17821) 2020-07-31 17:48:03 -07:00
Harmen Stoppels
d4831181ea
Add libxc 5.0.0 (#17807)
With experimental CUDA support and some patches to make it compile.

Currently +shared and +cuda conflict, this has to be fixed upstream.
2020-07-31 18:01:39 -05:00
Michael Kuhn
346977f501
meson: Add 0.55.0 (#17816) 2020-07-31 18:01:12 -05:00
Adam J. Stewart
9d942df352
py-wheel: add new version (#17819) 2020-07-31 15:58:00 -07:00
Adam J. Stewart
89759cc1f1
py-setuptools: add new version (#17818) 2020-07-31 15:57:42 -07:00
Adam J. Stewart
4c35cc1b20
py-pip: add new version (#17817) 2020-07-31 15:57:27 -07:00
Adam J. Stewart
4aaa39d091 py-torchvision: add v0.7.0 2020-07-31 14:34:55 -07:00
Adam J. Stewart
58d383877d PyTorch: add v1.6.0 2020-07-31 14:32:56 -07:00
Adam J. Stewart
198ccfae4e Pandas: add v1.1.0 2020-07-31 14:20:17 -07:00
darmac
c2cd728e03
cp2k: support for aarch64 (#17786) 2020-07-31 16:17:31 -05:00
Brian Van Essen
46e7fbe120
LBANN: add versions, update CUDA support and dependencies (#17813)
* Update LBANN, Hydrogen, Aluminum to inherit CudaPackage
* Update CMake constraints: LBANN, Hydrogen, and Aluminum now require
  cmake@3.16.0: (better support for pthreads with nvcc)
* Aluminum: add variants for host-enabled MPI and RMA features in a
  MPI-GPU RDMA-enabled library
* NCCL: add versions 2.7.5-1, 2.7.6-1, and 2.7.8-1
* Hydrogen: add version 1.4.0
* LBANN: add versions 0.99 and 0.100
* Aluminum: add versions 0.4.0 and 0.5.0
2020-07-31 13:53:51 -07:00
Andrew W Elble
d89bc1d998
new package(s): py-gql (#17769)
* new package(s): py-gql

and related dependencies:
py-aiohttp
py-async-timeout
py-graphql-core
py-idna-ssl
py-multidict
py-websockets
py-yarl

new versions:
py-requests

* fixes

Co-authored-by: Andrew W Elble <aweits@skl-a-00.rc.rit.edu>
2020-07-31 14:54:25 -05:00
Rémi Lacroix
0303ef72ac
libxc: Add version 4.3.4. (#17781) 2020-07-31 14:48:48 -05:00
darmac
e938e439b9
Add new package: mongodb-async-driver (#17787) 2020-07-31 14:45:35 -05:00
darmac
8df17d3830
open-iscsi: refine runtime environment (#17789) 2020-07-31 14:43:40 -05:00
Xavier Delaruelle
c7e83a8375
environment-modules: add version 4.5.2 (#17795) 2020-07-31 14:42:08 -05:00
Andrew Gaspar
c436414352
Add Rust versions 1.45.1 and 1.44.1 (#17812) 2020-07-31 14:30:00 -05:00
darmac
b7e0fec5f0
Alluxio (package): update url, add versions (#17805)
* Add versions 2.2.1 and 2.2.0
* Remove version 2.1.0
* Add dependency on Java
2020-07-31 11:25:22 -07:00
Justin S
cab2af9a71
py-mixedhtseq: new package at 0.1.0 (#17702)
* py-mixedhtseq: new package at 0.1.0

* py-mixedhtseq: flake8 fixes
2020-07-31 11:58:53 -05:00
Justin S
da5bbe3cef
py-gpy: add 0.8.8 (#17548)
* py-gpy: add 0.8.8

* py-gpy: remove unneeded dep

* py-gpy: make cython build-only
2020-07-31 11:55:49 -05:00
Edoardo Aprà
154870da0b
NWChem 7.0.0 (#17779)
* NWChem 7.0.0

* add python2 for 6.8.1. removed 6.8 https://github.com/spack/spack/pull/17779#discussion_r462700413

* nwchem 6.8.1 breaks with gcc 10 and later

* restored extra python bits for version 6.8.1. add env. definition of basis libraries

* changes for flake8

* url fixed

* prevent 6.8.1 being compiled with gcc 10
2020-07-31 10:45:27 -05:00
Andrew W Elble
edba70557d
new package(s): py-torch-geometric (#17768)
* new package(s): py-torch-geometric
(with related dependencies: py-rdflib, py-googledrivedownloader)

* fixes
2020-07-31 10:41:24 -05:00
Claire Guilbaud
fd15fc9c70
sphinx copybutton: new package at v0.2.12 (#17632) 2020-07-31 11:41:56 +02:00
Claire Guilbaud
41f743b45d
recommonmark: new package at v0.6.0 (#17629) 2020-07-31 11:39:53 +02:00
Rémi Lacroix
ccb316964d
Improve Ferret package (#17620)
* Ferret: Add missing dependency with curl.

* Ferret: Don't force using the static version of libgfortran.

* Ferret: Ensure Spack's compiler wrappers are used.

This allows properly setting the rpaths.

* Ferret: Add support for versions 7.3 to 7.6.

* Ferret: Add a variant to install Ferret standard datasets.

* Ferret: Define some useful runtime environnement variables.

* Ferret: Fix flake8.

Also add myself as a maintainer as suggested by @alalazo.
2020-07-30 22:23:49 -05:00
Tom Payerle
58911d8248
kahip: Fix issue #17638 (make SConstruct files python3 friendly) (#17642)
As discussed in issue #17638, wherein kahip fails to build when
scons is dependent on python@3.

This converts the print statements in various SConstruct files
into python3 friendly print functions.

I found most of the affected SConstruct files in both @2.00 and
the later versions I found on web, but some files were only in @2.00.
I split the patches into two files for that reason, but have not
tried the later versions.
2020-07-30 22:22:40 -05:00
vvolkl
f09656e3f8
New Versions: dd4hep, podio (#17659)
* [dd4hep] add new patch version

* [podio] add new version and update env vars

* [dd4hep] add hepmc3 variant
2020-07-30 22:21:02 -05:00
Rémi Lacroix
d609a6dde7
Update LAMMPS package (#17715)
* LAMMPS: Use LATTE 1.2.2 starting with version 20200602.

Version 20200602 and upper requires Latte 1.2.2. This caused the internal Latte distribution to be used instead of the Latte install provided by Spack.

* LAMMPS: Add new versions 20200630 and 20200721.
2020-07-30 22:19:59 -05:00
ketsubouchi
45a67fa0f3
dcmtk: fixed type error (#17758)
* dcmtk: fixed type error

* Update var/spack/repos/builtin/packages/dcmtk/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-07-30 22:18:55 -05:00
Francine Lapid
32b070a76b
New package: IDL (#17451)
* New package: IDL

* Update var/spack/repos/builtin/packages/idl/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/idl/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* added license header and changed url_for_version to just url

* removed unused imports, addressed comments

* removed trailing whitespace on line 14

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-07-30 22:17:35 -05:00
darmac
9c7c4a739f
mozjs@1.8.5: fix compile issue (#17594)
* mozjs@1.8.5: fix compile issue

* mozjs: refine method
2020-07-30 22:15:53 -05:00
Tomoki, Karatsu
50f96e15de
vtk: Support for new option to enable MPI. (#17727) 2020-07-30 22:05:20 -05:00
Daryl W. Grunau
7dd5793b75
backport Mesa MR#6053 to prevent multiply-defined symbols (#17720)
Co-authored-by: Daryl W. Grunau <dwg@lanl.gov>
2020-07-30 22:04:24 -05:00
G-Ragghianti
b86e620743
Fixing problems caused by a comfused spack concretizer (#17797) 2020-07-30 22:01:48 -05:00
Harmen Stoppels
6fb8946dd5
Add variants to squashfs for different compression algorithms (#17755) 2020-07-30 22:01:13 -05:00
Lucas Frérot
cfbcf719db
New package: py-uvw (#17719)
* py-uvw: added package for versions 0.0.7 and 0.3.1

* py-uvw: added py-setuptools as dependency
2020-07-30 21:52:17 -05:00
Dr Owain Kenway
8b515f3ba0
flang: make sure to find libstdc++ if needed (#17480) 2020-07-30 14:55:16 +02:00
Adam J. Stewart
d512537417
Python: added v3.8.4, v3.8.5, v3.7.7, v3.7.8, v3.6.11 (#17775)
Also added older version in the 3.6 and 3.5 series
2020-07-30 14:49:01 +02:00
G-Ragghianti
2f5e4e1664
MAGMA isn't compatible with CUDA 11 (#17753)
Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-07-30 11:24:21 +02:00
G-Ragghianti
7b051df83f
slate package: resolve issues with cuda version and fortran compiler name (#17759)
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-07-30 11:21:49 +02:00
darmac
b96448269a
couchdb: new package at v3.1.0 (#17595) 2020-07-30 11:17:19 +02:00
Wouter Deconinck
b24a9a383a
lhapdf5: new package at v5.9.1 (#17746)
During configure lhapdf5 searches for python. On one system
I tested on (ubuntu 19.10) it finds a system installed python3
and fails to create the python extension.

Variant named to make explicit that this is only a python2 extension.
2020-07-30 11:11:17 +02:00
Rémi Lacroix
cd1647af66
latte: added v1.2.2 and master (#17714)
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-07-30 10:19:59 +02:00
darmac
d5fc3f267c
zipkin: new package at v2.21.5 (#17780) 2020-07-30 10:03:52 +02:00
Glenn Johnson
f0ce129c43
New package: r-hh (#17667)
* New package: r-hh

* Add short description

Add the project one liner for a short description that will be used for
`module whatis`.
2020-07-29 22:25:01 -05:00
ilbiondo
d61f362211
Updated iq-tree package (#17690) 2020-07-29 22:20:44 -05:00
Robert Mijakovic
8ea597c79a
Intel packages: new versions (#17692)
* update version: intel packages daal, ipp, mkl-dnn, mkl, mpi, parallel-studio, pin, tbb and makes url parameter consistent and always use single quote.

* Fixes a typo with one of the sha256 checksum..

* Adds version entries for new versions of Intel packages.

* Adds hashes for new versions of Intel packages.

* Adds missing hash of Intel compiler.

* Adds the newest version of Intel MPI 2019.8.

* Fixes hash for intel-parallel-studio and intel-tbb.

* Fixes version number of Intel MPI.

Co-authored-by: Robert Mijakovic <robert.mijakovic@lrz.de>
2020-07-29 22:18:32 -05:00
Rémi Lacroix
e7fbd6c53e
CMake: Fix compilation with Intel compilers on some systems. (#17693)
Systems with older GNU compilers were not affected.

This commit fixes #15901 and fixes #17605.
2020-07-29 22:17:32 -05:00
Tiziano Müller
8e49cac433
pgi: update to 20.4 (#17696) 2020-07-29 22:16:30 -05:00
Shayna Kapadia
867e64cb4f
libmodbus: new package (#17778)
* libmodbus:adding new package

* fixing testing failures

* fixing flake 8 errors

* fixing flake 8 errors

Co-authored-by: Kapadia <kapadia2@llnl.gov>
2020-07-29 22:13:58 -05:00
Rao Garimella
3a8815ea7a
update version to 1.1.5 (#17701)
Co-authored-by: Rao Garimella <rao@abyzou.lanl.gov>
2020-07-29 22:12:10 -05:00
Toyohisa Kameyama
d14baf4532
use libquadmath only x86_4 and ppcle. (#17728) 2020-07-29 21:47:18 -05:00
Mark Olesen
badd11e71c
openfoam package updates, scotch version update (#17731)
* openfoam: use MPI 'headers' property (fixes #17730)

* openfoam: +spdp variant, usable for OpenFOAM 1906 and later

in contrast to +float32, which uses single-precision throughout, +spdp
uses the following:

- single-precision for most internals
- double-precision for linear solver

* openfoam: add m4 as build dependency

* scotch: update to 6.0.9 released Oct 2019

Co-authored-by: Mark Olesen <Mark.Olesen@esi-group.com>
2020-07-29 21:45:40 -05:00
Valentin Clement (バレンタイン クレメン)
42dec9eb12
CLAW: Add version 2.0.2 (#17733) 2020-07-29 21:43:14 -05:00
Wouter Deconinck
6b3f9c5d60
New package: vgm (#17741)
* [vgm] new package Virtual Geometry Model (VGM)

* [vgm] Updated description
2020-07-29 21:04:37 -05:00
Wouter Deconinck
ba5aa67303
New package: geant4-vmc (#17745)
* [geant4-vmc] New package

* [geant4-vmc] aligned spacing
2020-07-29 20:44:16 -05:00
David Böhme
21ca7abf8d
Add Caliper v2.4.0 (#17750)
* Add Caliper v2.4.0

* Use built-in gotcha
2020-07-29 20:41:41 -05:00
Julien Loiseau
efb456cb0a
Adding pic support for Kokkos (#17751)
* Adding pic support for Kokkos

* Update pic for kokkos
2020-07-29 20:40:12 -05:00
h-denpo
4e12dc3303
elang add depends_on('ncurses', type='link') (#17761) 2020-07-29 20:30:04 -05:00
Mark W. Krentel
896e83e3e6
libunwind: add +pic variant (#17762)
Libunwind already builds a shared library.  The +pic variant adds the
compiler pic flag to the static archive so that it can be linked into
another shared library.
2020-07-29 20:29:24 -05:00
ketsubouchi
8435016a43
eagle: fix CC=gcc and delete march=native (#17763) 2020-07-29 20:28:31 -05:00
Justin S
416a929f7f
spades: add 3.14.1 (#17776) 2020-07-29 20:03:58 -05:00
Robert Pavel
af778aac0a
Tweak to EOSPAC for gcc@10 Support (#17777)
Eospac's build breaks on gcc@10: due to dependence on -fcommon behavior
and gnu changing to -fno-common. Added conditional argument to support
bleeding edge compilers
2020-07-29 20:03:12 -05:00
tilne
5a5f2c00a8
update URL and sha256 for aws-parallelcluster 2.8.0 (#17685)
Signed-off-by: Tim Lane <tilne@amazon.com>
2020-07-29 19:35:43 -05:00
Jen Herting
5243f97c3b
[bowtie2] added version 2.4.1 (#17748) 2020-07-29 15:15:33 -07:00
Rémi Lacroix
5a42883528
Boost: Update conflicts for version 1.73.0. (#17774)
Variant "+mpi+python cxxstd=98" is fixed in 1.73.0.
2020-07-29 12:08:20 -07:00
ketsubouchi
1827db2859
express: add cast for %fj (#17764) 2020-07-29 11:53:39 -07:00
Toyohisa Kameyama
5b12c0f4a0
clamcv: Add curl dependency. (#17765) 2020-07-29 11:48:07 -07:00
darmac
a0e6145884
Add new package: solr (#17597)
* Add new package: solr

* refine version order
2020-07-29 11:38:44 -07:00
Massimiliano Culpo
e47e972cf2 zlib: style changes to check if set of changed files is computed correctly 2020-07-29 11:23:34 -07:00
Matthias Wolf
90648bb477
qt: fix build with ~ssl. (#17767)
OpenSSL was pulled from the spec too early, leading to failures when
attempting to build with ~ssl.
2020-07-29 10:53:01 -07:00
Andrew W Elble
d1494fe8da
perl: add missing berkeley-db dependency (#17771) 2020-07-29 10:46:24 -07:00
Massimiliano Culpo
cad21d6eb1
lmod: change variant defaults to match Lmod's defaults (#17770) 2020-07-29 10:35:46 -07:00
mic84
a212bb0577
Amrvis: update branch name (#17718) 2020-07-28 09:12:00 -07:00
Patrick Gartung
7c61d6d45f
Update darshan package with mpi variant (#17717)
* Update darshan package with nompi variant.

* Change variant to mpi and default to True
2020-07-27 16:30:29 -05:00
Glenn Johnson
ff529e6dc1
r-adespatial: added new package (#17700)
This PR adds the r-adesaptial package and several other new packages as
dependencies.

- r-adegraphics
- r-adephylo
- r-phylobase
- r-rncl
- r-rnexml
2020-07-27 22:08:48 +02:00
Glenn Johnson
1c0abaa6eb
r-dss: added new package at v2.36.0 with dependencies (#17661)
This PR adds the r-dss package and the r-bsseq package, also new, as a
dependency. This includes the latest versions, which required updates to
the following dependencies:

- r-biocgenerics
- r-iranges
- r-s4vectors
- r-summarizedexperiment

Older versions of r-dss and r-bsseq are included as well to ensure
compatibility with older versions of the above dependencies.
2020-07-27 20:51:27 +02:00
Seth R. Johnson
6c2749536e
qt: fixed build with apple-clang (#17706) 2020-07-27 18:32:29 +02:00
Adam J. Stewart
4e4b8d8249
SciPy: added v1.5.2 (#17708) 2020-07-27 18:26:30 +02:00
ketsubouchi
032a52e006
scons: added support to Fujitsu compilers (#17710) 2020-07-27 18:23:53 +02:00
Hadrien G
e3cc7fc38c
acts: added v0.29 (#17712) 2020-07-27 18:13:56 +02:00
Amjad Kotobi
f2e66730d0
openmpi: added lustre variant to openmpi (#17478) 2020-07-27 18:11:57 +02:00
Claire Guilbaud
0ebdfb3c37
sphinxcontrib-mermaid: new package at v0.4.0 (#17630) 2020-07-27 17:30:22 +02:00
Claire Guilbaud
fdb21e3e91
json logger: new package at v0.1.11 (#17628) 2020-07-27 16:32:56 +02:00
Claire Guilbaud
d66d430ab5
pygments pytest: new package at v1.2.0 (#17626) 2020-07-27 15:44:26 +02:00
Claire Guilbaud
bbfc9fd448
commonmark: new package at v0.9.0 (#17624) 2020-07-27 15:02:56 +02:00
Claire Guilbaud
e960e016af
hieroglyph: new package at v1.0.0 (#17625) 2020-07-27 14:34:40 +02:00
Claire Guilbaud
074c0d622f
python docs theme: new package at v2020.1 (#17627) 2020-07-27 12:53:04 +02:00
Claire Guilbaud
458a9f22da
yolk3k: new package at v0.9 (#17635) 2020-07-27 12:48:58 +02:00
Claire Guilbaud
38730c6e68
sphinxcontrib trio: new package at v1.1.2 (#17631) 2020-07-27 12:14:12 +02:00
Claire Guilbaud
21a4edb1f3
sphinx gallery: new package at v0.7.0 (#17633) 2020-07-27 11:21:48 +02:00
Hadrien G
907f9e8411
[root] Add version 6.22 (#17459)
* Add ROOT v6.22

* Hello xext my old friend...
2020-07-26 10:08:53 -05:00
Patrick Gartung
66d59a90ed
Rename sas static-analysis-package (#17695) 2020-07-24 17:07:01 -07:00
Nicholas Sly
5795f1d7da
Add Totalview package (#17643)
* Add initial totalview package.

* Add maintainer and helpful comments/information.

Co-authored-by: sly <sly@lanl.gov>
2020-07-24 16:01:32 -07:00
t-nojiri
de6dfe3707
brltty (package): Add dependency on alsa-lib (#17616) 2020-07-24 15:56:34 -07:00
Jen Herting
148acfefcc
py-gensim (package): add version 3.8.3; update dependency constraints (#17641) 2020-07-24 15:47:19 -07:00
Matthieu Dorier
b04f9e6774
MPICH (package): add optional support for argobots (#17678) 2020-07-24 15:42:00 -07:00
Christian Tacke
0e090064c4 singularity: Add version 3.6.1 2020-07-24 15:35:40 -07:00
vvolkl
be06803804
WHIZARD (package): add LCIO dependency, Openloops support (#17658)
* WHIZARD: add versions 2.8.4 and 2.8.3
* New package: LCIO
* WHIZARD: add optional dependency on LCIO
* WHIZARD: add optional dependency on Openloops
* WHIZARD: allow building with either hepmc or hepmc3 dependencies
* Openloops: set process_lib_dir in configure
* Openloops: fix reference to variant
2020-07-24 15:25:57 -07:00
Andrew W Elble
99c46e8186
py-astropy: force re-cythonization of distributed .pyx files (#17567)
astropy 3.2.1 fails to build with python 3.8.3 with
errors similar to this:

astropy/stats/_stats.c:318:11: error: too many arguments to function 'PyCode_New'
PyCode_New(a, 0, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos)

These are files that are generated by cython, but are included in the
tarball. Since there's apparently been an API change to PyCode_New, they will
need to be re-cythonized to compile correctly.
2020-07-24 17:46:56 +02:00
Andrew W Elble
30d0347825
py-astropy-healpix: new package (#17568) 2020-07-24 17:39:45 +02:00
jdomke
ea50e4036e
scorep: add libunwind dependency (#17580) 2020-07-24 17:30:50 +02:00
Harmen Stoppels
54bce00d4d
Ensure that the stubs directory does not end up in the rpath (#17619) 2020-07-24 17:02:58 +02:00
Jon Rood
d3e4b14997
imagemagick: added dependency on libsm (#17577) 2020-07-24 17:00:25 +02:00
rempke
6bad79fca0
netlib-scalapack: fixed compilation with gcc 10 (#17647) 2020-07-24 16:53:32 +02:00
t-nojiri
13b3578d2f
camx: change compile option for aarch64 (#17653) 2020-07-24 16:39:40 +02:00
Adam J. Stewart
08b5b56566
Qhull: add v2019.1 and v2020.1 (#17648)
* Qhull: add v2019.1 and v2020.1
* Fix compilation with Apple Clang
2020-07-24 16:16:53 +02:00
Adam J. Stewart
c1a2d66804
py-matplotlib: fix freetype and qhull dependencies (#17649) 2020-07-24 16:15:50 +02:00
Mark Olesen
c95c183bc4
openfoam: install META-INFO directory (#17673)
Co-authored-by: Mark Olesen <Mark.Olesen@esi-group.com>
2020-07-24 15:32:18 +02:00
Michael Kuhn
ed4b770e1a
gcc: added v10.2.0 (#17681) 2020-07-24 15:24:12 +02:00
Federico Ficarelli
b8c3e3e16f
hipsycl: switch to renamed default branch (#17689) 2020-07-24 15:19:59 +02:00
Rémi Lacroix
d9c1b62d38
CMake: added v3.18.0. (#17688) 2020-07-24 15:02:08 +02:00
ilbiondo
1aa1ddcd78
Updated elmer-fem recipe (#17687) 2020-07-24 09:47:09 +02:00
Adam J. Stewart
5fed42eae8 NumPy: add v1.19.1 2020-07-23 17:56:48 -07:00
ketsubouchi
1bbf8c0635
libgd (package): update configure to find jpeg dependency (#17655) 2020-07-23 17:55:34 -07:00
ketsubouchi
1fe07891e3
cctools (package): remove fstack-protector-all for Fujitsu compiler (#17656)
The Fujitsu C compiler does not support the "fstack-protector-all" option.
2020-07-23 17:49:37 -07:00
Tamara Dahlgren
a88675ffa9
XBraid (package): Switch to Github URL (#17670) 2020-07-23 17:27:25 -07:00
Chuck Atkins
547c71ad78
Revert "Add libglvnd packages/Add EGL support (#14572)" (#17682)
This reverts commit 573489db71.
2020-07-23 17:41:48 -04:00
ilbiondo
f42394daf5
csa-c: added new package at master (#17676)
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2020-07-23 17:07:48 +02:00
ilbiondo
10dacc2588
nn-c: added new package at v1.86.2 (#17675)
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2020-07-23 17:06:35 +02:00
ilbiondo
5067b956f4
Shapeit4: added new package at v4.1.3 (#17674) 2020-07-23 13:22:58 +02:00
Nick Robison
39cfa9630c
[M4] Add missing compiler flag on Cray Compiler (#17604)
* [M4] Add missing compiler flag on Cray Compiler

The new version of the Cray Compiler are based on Clang, which means we
need to add the same LDFLAG as other clang environments.
2020-07-22 23:55:03 -07:00
Adam J. Stewart
4b33558707
Cython: add v0.29.21 (#17650) 2020-07-22 18:36:55 -07:00
Jen Herting
48e8072b26
New Package: py-boto (#17639)
Added py-boto package
2020-07-22 17:52:36 -07:00
Frédéric Simonis
37fa6fe343
precice: Add version 2.1.0 (#17644) 2020-07-22 16:49:36 -07:00
Mark W. Krentel
4c7e52adaa
hpctoolkit: add version 2020.07.21 (#17645) 2020-07-22 13:53:41 -07:00
Ben Bergen
4ca6d1f0f7
Added variant to enable Legion SPY logging. (#17637) 2020-07-22 11:41:20 -06:00
Hadrien G
b8135bd205
[acts] Add version 0.28.0 (#17622)
Add acts v0.28.0
2020-07-22 09:14:51 -07:00
Justin S
dedadcd2ea
hisat2 (package): add version 2.2.0, update homepage (#17600) 2020-07-21 19:29:18 -07:00
Adam J. Stewart
983aeea850
New packages: py-azure-cli and dependencies (#17585) 2020-07-21 19:21:29 -07:00
Hadrien G
b81339cf80
[acts] Add 0.27.x series (#17621)
Add acts v0.27 and v0.27.1
2020-07-21 10:56:18 -07:00
Tiziano Müller
ec1237479e
cp2k: make libint optional (#17618) 2020-07-21 09:13:59 -07:00
t-nojiri
40e2a41477
aegean (package): remove -m64 on aarch64 (#17615) 2020-07-20 23:57:09 -07:00
Hadrien G
f168d63586
acts: added v0.26 (#17602) 2020-07-21 08:37:21 +02:00
Nick Robison
78a84efb4b
flatbuffers: added v0.12.0 (#17603) 2020-07-21 08:30:44 +02:00
Seth R. Johnson
c6891376f4
qt4: add missing libSM dependency (#17611)
See https://github.com/spack/spack/issues/15082 and
https://github.com/spack/spack/pull/16226
2020-07-21 08:12:36 +02:00
Mark W. Krentel
83b281f36b
hpcviewer, ibm-java: new versions (#17612)
Add hpcviewer version 2020.07 and ibm-java 8.0.6.11.
2020-07-21 08:09:53 +02:00
Tamara Dahlgren
86ec698a33
Bugfix: Do not raise InstallError for ascent_ver (#17578) 2020-07-20 18:32:56 -07:00
Justin S
3949a85f9a
py-dp-gp-cluster: new package at 2019-09-22 (#17549)
* py-dp-gp-cluster: new package

* py-dp-gp-cluster: remove master, add 2019-09-22

* py-dp-gp-cluster: require python2, older gpy, sklearn

* py-dp-gp-cluster: remove cython runtime dep
2020-07-20 10:48:17 -05:00
Cyrus Harrison
bab1852340
update ascent package with recent ver dep logic, and dray support (#17502)
* update ascent package with recent ver dep logic, and dray support

* update pmt name, make babelflow logic dep on mpi
2020-07-18 08:53:48 -05:00
Jon Rood
ef814b7a32
Add texlive 2020 version (#17559)
* Add new versions of texlive and poppler.

* Add new versions of harfbuzz which also relocated source location to github.

* Update var/spack/repos/builtin/packages/harfbuzz/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Restore deleted url line in harfbuzz.

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-07-18 08:49:32 -05:00
Amjad Kotobi
e4ba1c1daf
r-devtools: add version 2.3.0; update dependencies (#17408) 2020-07-17 12:11:29 -07:00
Fabien Bruneval
bbbf0466dc
libint (package): add tuning options for MOLGW (#17329) 2020-07-17 12:10:05 -07:00
Cyrus Harrison
dc18b3e3d4
New package: parallelmergetree (#17501) 2020-07-17 12:03:11 -07:00
Adam J. Stewart
a5aa150a98 py-matplotlib: add v3.3.0 2020-07-17 11:05:41 -07:00
Amjad Kotobi
c729c6b93c
subversion: added v1.14.0 amd v1.13.0, added new url (#17519) 2020-07-17 16:33:46 +02:00
Cyrus Harrison
324c383d8e
add devil ray package (#17495)
* add dray with mid-review changes

* remove env import since its impliclity included
2020-07-16 19:51:41 -07:00
Francesco Di Natale
35b7a69456
Updates to maestrowf package (#17470)
* Addition of Chainmap to satisfy Maestro dependency.

* Additional versions and dependencies for Maestro.

* Updated URL to point to pypi.

* Updates to chainmap hashes.

* Updates to pull version from PyPi.

* Corrections to flake8 errors.

* Stricter restrictions on Python versioning.

Maestro actually supports Python 3.5 and later.

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Only install chainmap for Python2 versions.

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Removal of setuptools python cond.

* Removal of version constaints on setuptools.

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-07-16 19:38:45 -05:00
Kelly (KT) Thompson
d69c32d7ef
Version 1.13.2 still needs the XL patch. (#17561) 2020-07-16 19:35:33 -05:00
Scott Wittenburg
27aaff3dc2
adept-utils: 1.0.1 does not build w/ boost 1.73.0 or newer (#17560) 2020-07-16 19:34:47 -05:00
Seth R. Johnson
fc8847cf4e
Mark old icu4c as conflicting (#17562)
GCC 4.8.5 on rhel6:
```
utext.cpp:572:5: error: 'max_align_t' in namespace 'std' does not name a
type
     std::max_align_t    extension;
     ^
utext.cpp: In function 'UText* utext_setup_67(UText*, int32_t,
UErrorCode*)':
utext.cpp:587:73: error: 'max_align_t' is not a member of 'std'
             spaceRequired = sizeof(ExtendedUText) + extraSpace -
sizeof(std::max_align_t);
                                                                         ^
utext.cpp:587:73: note: suggested alternative:
In file included from
/projects/spack/opt/spack/gcc-4.4.7/gcc/6ln2t7b/include/c++/4.8.5/cstddef:42:0,
                 from utext.cpp:19:
/projects/spack/opt/spack/gcc-4.4.7/gcc/6ln2t7b/lib/gcc/x86_64-unknown-linux-gnu/4.8.5/include/stddef.h:
425:3: note:   'max_align_t'
 } max_align_t;
   ^
utext.cpp:598:57: error: 'struct ExtendedUText' has no member named
'extension'
                 ut->pExtra    = &((ExtendedUText *)ut)->extension;
                                                         ^
   g++   ...  loadednormalizer2impl.cpp
   g++   ...  chariter.cpp
```
2020-07-16 19:34:02 -05:00
Jon Rood
697c2183d3
Add new dependencies required in latest rsync. (#17558) 2020-07-16 19:25:22 -05:00
Nichols A. Romero
b320be70cb
PySCF new package (#17474)
* Initial version of PySCF.

* Add master branch to xcfun library

* PySCF only compatible with specific commit of xcfun library

* Update var/spack/repos/builtin/packages/py-pyscf/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/py-pyscf/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Revert "PySCF only compatible with specific commit of xcfun library"

This reverts commit 8296005400fbe76d0c8339b7ca06e71a801f0a22.

* Revert "Add master branch to xcfun library"

This reverts commit f2b69989316a6bece6530d5d63f1d120ab4c14a8.

* Issues conflict for xcfun library version rather than relying on a random commit.

* Add version xcfun 2.0.0a2 which is needed by PySCF.

* Remove xcfun conflict and express dependency more explictly. Add comment as to why this is necessary.

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-07-16 15:58:52 -05:00
downloadico
3f24188d19
Abinit+wannier90 fix (#17417)
* wannier90: add versions 3.0.0 and 3.1.0 and 'shared variant'

Added versions 3.0.0 and 3.1.0

Added shared variant

Added url_for_version function as versions less than 3 are from the
wannier.org site and versions 3 and up are from github.com

Added the MPI libraries to the list of libs substituted into the make.sys file
in place of @LIBS

Made it possible to build a shared object version of the library for versions
< 3 by filtering the src/Makefile.2 file (based off of the patch from a src rpm
from RHEL for version 2.0.1)

Create a modules directory in the install prefix root directory and copy the
Fortran .mod files there.

Set the MPIFC variable to the Spack Fortran MPI compiler wrapper.

* abinit: added 'wannier90' variant  which enables building abinit with wannier90

Added wannier90 variant

Made abinit depend on the shared object ('shared') variant of
wannier90 if the wannier90 variant is selected

Add configure args for wannier90 libs, includes, and binaries and to
set MPIFC

set the dft-flavor to wannier90 when wannier90 is enabled and only
set the dft flavor to 'atompaw+libxc' if wannier90 is not selected

* Update var/spack/repos/builtin/packages/abinit/package.py

Co-authored-by: Greg Becker <becker33@llnl.gov>

* Update var/spack/repos/builtin/packages/wannier90/package.py

Co-authored-by: Greg Becker <becker33@llnl.gov>

* Update var/spack/repos/builtin/packages/wannier90/package.py

Co-authored-by: Greg Becker <becker33@llnl.gov>

* incorporated bbecker's suggestion for making the strings less ugly!

* incorporated bbecker's suggestion to fix the logic for picking which
"DFT flavor" configure argument.
If the wannier variant is enabled, it passes --with-dft-flavor=wannier90
to configure, otherwise it passes --with-dft-flavor=atompaw+libxc to configure

* Changed to using plain strings

* Fixed version tests

* incorporated @adamjstewart's fix for testing if the major version is > 2

* incorporated @adamjstewart's fix to check if mpi is enabled and
only set the MPIFC variable if it is.

* Update var/spack/repos/builtin/packages/wannier90/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Only set MPIFC if '+mpi' is set

* incorporated fixes from @adamjstewart including:
	- using the string=True argument to filter_file (and removed the unneeded
 	  escapes)
	- changing the url to the github location
	- fixing the version checks
	- building a libwannier.dylib on darwin

* incorporated fixes suggested by @adamjstewart including:
	- using the string=True argument to filter_file and cleaned up the escapes
	- only pass the MPIFC argument to configure when '+mpi' is set
	- chaned the url to the github site for Wannier090
	- fixed the version checks
	- build a 'libwannier.dylib' file when building the shared variant on darwin

* Update var/spack/repos/builtin/packages/wannier90/package.py

Co-authored-by: Greg Becker <becker33@llnl.gov>

* moved a configure argument from it's own '+mpi' check to under the lower one

* Update var/spack/repos/builtin/packages/wannier90/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Cleaned up syntax as suggested by @adamjstewart
It looks *so much better* now!  Thanks!

* removed unneeded import of 'find' from 'llnl.util.filesystem' package
as suggested by @adamjstewart

* Update var/spack/repos/builtin/packages/wannier90/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* incorporated changes from @adamjstewart
changed check to "if '@:2 +shared' in spec:" instead of a nested check of '@:2' and
'+shared'
removed unneeded joins used in filter_file and spliced the list of objs directly into
the filter_file call
used the dso_suffix instead of testing for darwin to determine the name of the
shared library

* removed whitespace from blank line

* fixed bug with '../../wannier90.x: .*' not being treated as a regexp.  Thanks Adam!

* fixed missing whitespace when modifying Makefile.2

Co-authored-by: Greg Becker <becker33@llnl.gov>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-07-16 15:57:42 -05:00
Themos Tsikas
8e9f4d0078
Update for Build 7020 of nagfor compiler (#17555) 2020-07-16 10:39:06 -05:00
darmac
d7794540b2
Add new package: hibench (#17552) 2020-07-16 08:47:33 -05:00
iarspider
ae44b1d7b9
New package: openloops (#17520)
* New package: OpenLoops

* install() for openloops

* Working OpenLoops recipe

* Flake-8

* Only copy collection file if required; add clarification to num_jobs

* Add __future__ import just in case

* Fix missing space

* Remove __future__ import

* Changes from review, pt. 1

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Replace print() with write()

* Flake-8

Co-authored-by: iarspider <iarpsider@gmail.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-07-16 08:33:23 -05:00
Tom Payerle
df12b2bd15
kallisto: remove mpich dependency (#17551)
kallisto does not depend on mpich or MPI, except possibly indirectly
through hdf5 (but that should be handled by hdf5).
2020-07-16 08:28:50 +02:00
darmac
148a6a8860
Add new package: prometheus (#17541) 2020-07-15 21:56:14 -05:00
darmac
efba3731e5
storm: update url, version & runtime depends (#17523)
* storm: update url, version & runtime depends

* fix list_url error
2020-07-15 21:39:03 -05:00
fcannini
6eb332a984
vasp: New package. (#15187)
* vasp: New package.

* Remove unneeded `#noqa`

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Removed a completely needless tty.debug()

* Add compiler conflicts() and minute fixes

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-07-15 21:33:53 -05:00
Cyrus Harrison
d0a83f318b
add apcomp package (#17494)
* add apcomp package

* add maintainers

* fake8

* Update var/spack/repos/builtin/packages/apcomp/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* review suggestions

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-07-15 21:31:58 -05:00
Rémi Lacroix
0f67b97065
Update icu4c package (#17461)
* icu4c: Add new versions for older releases.

The old URLs for versions 60.1, 58.2 and 57.1 do not work anymore so add the versions available on Github.

The old versions are kept for reference (cf. #15896).

* icu4c: Add versions 66.1 and 67.1.

* icu4c: Fix compilation of versions 58 and 59 with recent glibc.
2020-07-15 18:57:19 -05:00
kolamsrinivas
d2c2e000a7
changes to py-torch recipe to enable rocm build (#17410)
* changes to recipe to enable rocm build

* fixing flake8 issue

* addressed the review comment
2020-07-15 18:45:22 -05:00