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py-dp-gp-cluster: new package at 2019-09-22 (#17549)

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* py-dp-gp-cluster: new package

* py-dp-gp-cluster: remove master, add 2019-09-22

* py-dp-gp-cluster: require python2, older gpy, sklearn

* py-dp-gp-cluster: remove cython runtime dep
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Justin S 2020-07-20 10:48:17 -05:00 committed by GitHub
parent bab1852340
commit 3949a85f9a
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1 changed files with 33 additions and 0 deletions
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var/spack/repos/builtin/packages/py-dp-gp-cluster/package.py Normal file
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# Copyright 2013-2020 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
from os import unlink
from glob import glob
class PyDpGpCluster(PythonPackage):
"""DP_GP_cluster clusters genes by expression over a time course using a
Dirichlet process Gaussian process model."""
homepage = "https://github.com/PrincetonUniversity/DP_GP_cluster"
git = "https://github.com/PrincetonUniversity/DP_GP_cluster.git"
version('2019-09-22', commit='eec12e74219f916aa86e253783905f7b5e30f6f4')
depends_on('python@2.7:2.8', type=('build', 'run'))
depends_on('py-cython', type='build')
depends_on('py-gpy@0.8.8:0.9.9', type=('build', 'run'))
depends_on('py-pandas', type=('build', 'run'))
depends_on('py-numpy', type=('build', 'run'))
depends_on('py-scipy@0.14:', type=('build', 'run'))
depends_on('py-matplotlib', type=('build', 'run'))
depends_on('py-scikit-learn', type=('build', 'run'))
@run_before('build')
def remove_cython_output(self):
for f in glob('DP_GP/*.c'):
unlink(f)