[bowtie] added version 1.3.0. Patch fixed for new version (#17744)
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2 changed files with 14 additions and 1 deletions
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@ -0,0 +1,11 @@
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--- a/alphabet.cpp 2020-07-28 15:02:56.137635525 -0400
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+++ b/alphabet.cpp 2020-07-28 15:05:32.385589360 -0400
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@@ -274,7 +274,7 @@
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const char *iupacs = "!ACMGRSVTWYHKDBN!acmgrsvtwyhkdbn";
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signed char mask2iupac[16] = {
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- -1,
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+ static_cast<char>(-1),
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'A', // 0001
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'C', // 0010
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'M', // 0011
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@ -13,6 +13,7 @@ class Bowtie(MakefilePackage):
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homepage = "https://sourceforge.net/projects/bowtie-bio/"
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url = "https://github.com/BenLangmead/bowtie/archive/v1.2.0.tar.gz"
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version('1.3.0', sha256='d7c2d982a67884909f284a0ff150b56b20127cd7a1ced461c3c4c03e6a6374c5')
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version('1.2.3', sha256='86402114caeacbb3a3030509cb59f0b7e96361c7b3ee2dd50e2cd68200898823')
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# The bowtie project git tagged and GitHub released a v1.2.2,
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# discovered/fixed a bug, git tagged a v1.2.2_p1 and moved the
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@ -50,7 +51,8 @@ class Bowtie(MakefilePackage):
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patch('for_aarch64.patch', when='target=aarch64:')
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# measures for narrowing error
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patch('fix_narrowing_err.patch')
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patch('fix_narrowing_err.patch', when='@:1.2.3')
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patch('fix_narrowing_err_1.3.0.patch', when='@1.3.0:')
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def edit(self, spec, prefix):
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makefile = FileFilter('Makefile')
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