Commit graph

34322 commits

Author SHA1 Message Date
Christopher Christofi
d51d3dd1fb
libdicom: add new package (#41937) 2024-01-05 14:50:09 -08:00
Simon Pintarelli
861979a24f
cosma: add missing depends_on for nccl/rccl (#41955) 2024-01-05 14:47:11 -08:00
Vanessasaurus
63907d7f8f
Automated deployment to update package flux-sched 2024-01-05 (#41961)
Co-authored-by: github-actions <github-actions@users.noreply.github.com>
2024-01-05 14:42:03 -08:00
Jordan Galby
73dae78ab3
Fix setup-env when going back and forth between instances (#40924)
* setup-env: Fix back and forth between two instances

* setup-env.csh: Fix SPACK_ROOT when switch to a different instance

i.e. Always look for the current SPACK_ROOT

* setup-env: Update comments
2024-01-05 11:31:32 -06:00
Massimiliano Culpo
c1af62783a
Gitlab pipelines: check load avg also before running script (#41962) 2024-01-05 17:31:59 +01:00
Victor Brunini
0e698ff5c4
intel-oneapi-mkl: Add correct PKG_CONFIG_PATH entry for older versions. (#41958)
At least 2021.3.0 puts the .pc files in tools/pkgconfig, not lib/pkgconfig.
2024-01-04 19:33:15 -07:00
Todd Gamblin
533adaaa6d
spack list: add --namesapce / --repo option (#41948)
This adds options to `spack list` that allow you to list only packages from specific
repositories/namespaces, e.g.:

```console
spack list -r builtin
```

only lists packages from the `builtin` repo, while:

```console
spack list -r myrepo -r myrepo2
```

would list packages from `myrepo` and `myrepo2`, but not from `builtin`. Note that you
can use the same argument multiple times.

You can use either `-r` / `--repo` or `-N` / `--namespace`. `-N` is there to match the
corresponding option on `spack find`.

- [x] add `-r` / `--repo` / `-N` / `--namespace` argument
- [x] add test
2024-01-04 12:35:42 -08:00
Mikael Simberg
3a15f57b45
fmt: Add 10.2.1 (#41954) 2024-01-04 12:13:20 -07:00
Alec Scott
8f48bf7195
rust: add v1.75.0 & v1.74.0, merge related variants into +dev, add rust-analyzer (#41903)
* Add rust-analyzer as variant to rust build

* Expose cargo module only when +cargo

* rust: add v1.74.0 and v1.75.0 and remove variants in favor of +dev

* [@spackbot] updating style on behalf of alecbcs

* Fix variant typo

---------

Co-authored-by: alecbcs <alecbcs@users.noreply.github.com>
2024-01-04 11:08:20 -08:00
Dan Bonachea
c85391e3d8
symPACK: add new package (#41835) 2024-01-04 19:47:39 +01:00
bk
eacb824264
Bumps google-auth-oauthlib dependency restriction to be compatible with versions up to 1.0 (https://github.com/tensorflow/tensorboard/releases/tag/2.12.1) (#41940) 2024-01-04 10:18:32 -06:00
Arne Becker
2f712060bd
perl-moox-types-mooselike: new package (#41705) 2024-01-04 13:40:17 +01:00
Mikael Simberg
e50b758e12
gperftools: Add 2.14 (#41928)
* gperftools: Add 2.14

* Add conflict for gperftools 2.14 and PPC
2024-01-04 12:40:11 +01:00
Miguel Dias Costa
4a0af24624
update BerkeleyGW source urls (#38218)
* update url for BerkeleyGW version 3.0.1
* update source urls and add version 3.1.0 to berkeleygw package
2024-01-04 00:54:01 -08:00
Todd Gamblin
c46f3cfa8c
extensions: remove unused extendee_args() method (#41942)
This method is vestigial; the only arg we ever used was `ignore=`, and that was
eliminated in #29317 and #35588.

The `kwargs` field of the extensions dictionary is actually completely unused now. Add a
note for future removal.
2024-01-04 09:16:08 +01:00
Mikael Simberg
d8ec337f51
fmt: Add 10.2.0 (#41927) 2024-01-04 08:48:13 +01:00
Todd Gamblin
827b1f1437
bugfix: make test_requires_directive work on more platforms (#41943)
Literal compiler config in `test_requires_directive` specifically lists `target:
x86_64`, but it doesn't need to, and the unnecessary target makes the test fail on
non-`x86_64` machines.

- [x] Remove target from config yaml in `test_requires_directive`
2024-01-04 08:17:54 +01:00
Arne Becker
561da58cea
perl-email-simple: New package (#41932)
* perl-email-simple: New package

* Removed copyright line

* New year
2024-01-03 15:43:35 -07:00
Christopher Christofi
0d37564a90
perl-constant: add new package (#41912)
* perl-constant: add new package

* Update package.py

Co-authored-by: Alec Scott <alec@bcs.sh>

---------

Co-authored-by: Alec Scott <alec@bcs.sh>
2024-01-03 10:26:02 -08:00
Harmen Stoppels
3e3cd64150
Spec.format: error on old style format strings (#41934) 2024-01-03 17:44:59 +01:00
Wouter Deconinck
375bc6fc94
py-torch: set env OpenBLAS_HOME (#41745)
* py-torch: set env OpenBLAS_HOME

Because [`FindOpenBLAS.cmake`](https://github.com/pytorch/pytorch/blob/main/cmake/Modules/FindOpenBLAS.cmake) uses a hardcoded list of search paths for includes and libraries, we have to pass the `OpenBLAS_HOME` environment variable.

* py-torch: patch for ${OpenBLAS_HOME}/include/openblas

The context of this patch is unchanged since v0.4.0.

* py-torch: move patch before def patch

* py-torch: also set Atlas_ROOT_DIR and BLIS_HOME

* py-torch: fix openblas patch range to @:2.1

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

---------

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2024-01-03 06:42:56 -07:00
Alec Scott
4b2baa7e91
fd: add v9.0.0 and convert to CargoPackage (#41904) 2024-01-03 09:57:57 +01:00
Alec Scott
1bd502d785
ripgrep: add v14.0.3 and convert to CargoPackage (#41905) 2024-01-03 09:56:46 +01:00
Alec Scott
72ca7df9b2
bat: add v0.24.0 and convert to CargoPackage (#41906) 2024-01-03 09:55:55 +01:00
Wouter Deconinck
5d48130cc6
Xorg libs: updated versions to current latest (#36240)
* Xorg pkgs: updated version to current latest

This updates the versions of multiple Xorg packages to their current
latest version. Verified the requirements and version dependencies, and
updated where needed. Modified one homepage (xkbcomp) in the interest of
conformity with the other packages.

Summary of dependency changes:
- libsm:
  - depends_on("libice@1.1.0:", when="@1.2.4:")
- libx11:
  - depends_on("libxcb@1.11.1:", when="@1.6.4:")
- libxcomposite:
  - depends_on("xproto@7.0.22:", when="@0.4.6")
- libxfixes:
  - depends_on("fixesproto@5.0:", when="@5")
  - depends_on("fixesproto@6.0:", when="@6")
- libxi:
  - depends_on("inputproto@2.2.99.1:", when="@1.7:")
  - depends_on("inputproto@2.3.99.1:", when="@1.8:")

* xcb-proto, libxcb: new version 1.15

* xorg libs: additional new versions

New minor version upgrades:
- libXcursor (no changed needed)
- libXres
  - depends_on("resourceproto@1.0:", when="@1.0")
  - depends_on("resourceproto@1.2:", when="@1.2")

* libxpm: ... depends_on ncompress only when 3.5.15

* Xorg libs: add maintainer

* xtrans: new version 1.5.0

* xcb-proto: new version 1.16.0

* libxt: new version 1.3.0

* libxrandr: new version 1.5.4

* libxpm: new versions 3.5.16, 3.5.17

* libxi: new version 1.8.1

* libxft: new version 2.3.8

* libxfixes: new version 6.0.1

* libxcb: new version 1.16

* libx11: new version 1.8.5, 1.8.6, 1.8.7

* libxfixes: comment out problematic fixesproto versions

* libxi: comment out problematic inputproto versions

* libxfixes, libxi: add reference to issue that blocks updates
2024-01-02 17:47:42 -07:00
Larry Knox
2e639f82c7
Change h5z-zfp from MakefilePackage to CMakePackage. (#41890)
Remove versions before 1.1.0 that do not support CMake.
Remove patches for the removed versions.
2024-01-02 14:08:20 -06:00
Adam J. Stewart
63bad7cd79
py-torchvision: enable png/jpeg by default (#41913) 2024-01-02 14:06:35 -06:00
Weiqun Zhang
94b8bb0d87
amrex: add v24.01 (#41921) 2024-01-02 14:05:06 -06:00
YI Zeping
4f8e73e1c1
NWChem: patch on variant fftw3; fix for #41577 (#41632)
* patch on variant fftw3; fix for #41577

* a line of doubtful blas/fftw +openmp. Are they needed with nwchem+openmp?

* Update var/spack/repos/builtin/packages/nwchem/package.py

Co-authored-by: Rocco Meli <r.meli@bluemail.ch>

---------

Co-authored-by: Rocco Meli <r.meli@bluemail.ch>
2024-01-02 14:02:35 -06:00
dependabot[bot]
4056c1f632
build(deps): bump pytest from 7.4.3 to 7.4.4 in /lib/spack/docs (#41918)
Bumps [pytest](https://github.com/pytest-dev/pytest) from 7.4.3 to 7.4.4.
- [Release notes](https://github.com/pytest-dev/pytest/releases)
- [Changelog](https://github.com/pytest-dev/pytest/blob/main/CHANGELOG.rst)
- [Commits](https://github.com/pytest-dev/pytest/compare/7.4.3...7.4.4)

---
updated-dependencies:
- dependency-name: pytest
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2024-01-02 16:26:43 +01:00
Todd Gamblin
3118647802
Update copyright year to 2024 (#41919)
It was time to run `spack license update-copyright-year` again.
2024-01-02 09:21:30 +01:00
Todd Gamblin
1dac7338ed
cairo: verify license (#41902) 2024-01-01 20:53:24 -08:00
Adam J. Stewart
8593249e3d
py-tensorboard: fix import tests (#41874) 2024-01-01 15:03:05 -06:00
Seth R. Johnson
6008ae0c60
geant4-data: fix versions for 11.2 (#41895)
* geant4-data: fix versions for 11.2

The Geant4@11.2 DATASET cmake variables are looking for G4EMLOW 8.5 (not
8.4) and G4INCL 1.2 (not 1.1).

* g4emlow: fix hash
2024-01-01 11:52:47 -07:00
Tal Ben-Nun
db33124708
dace: Add package and version 0.15.1 (#36178)
* dace: Add package and version 0.14.2

* Update dependencies and package version

* Address review comments

* Style

* Address review comments

* Address review comments
2024-01-01 08:08:13 -07:00
Adam J. Stewart
f3588ad347
py-munch: setuptools needed at run-time (#41865) 2023-12-31 19:57:56 -07:00
Adam J. Stewart
7573c9bc1e
py-pip: fix import tests (#41867) 2023-12-31 19:47:46 -07:00
Adam J. Stewart
27bdba1dc7
py-setuptools: fix import tests (#41872) 2023-12-31 12:32:37 -07:00
Dom Heinzeller
f42d8bf3e7
Bug fix in py-gevent to build with intel/oneapi compilers (#41896) 2023-12-31 06:47:23 -06:00
Juan Miguel Carceller
d2462fb0af
gaudi: add a patch for catch2 (#41177)
* gaudi: add a patch for catch2

* Fix indentation

* Add a diff at the end of the path

* gaudi: canonicalize patch url

* gaudi: canonicalize patch url for gitlab diff

---------

Co-authored-by: jmcarcell <jmcarcell@users.noreply.github.com>
Co-authored-by: Wouter Deconinck <wdconinc@gmail.com>
2023-12-30 14:58:21 -07:00
Wileam Y. Phan
32278eecb7
gdb: add v13.2 and v14.1 (#41855) 2023-12-30 03:03:35 -07:00
Wouter Deconinck
d3c796f2ce
pythia8: new version 8.310 (#41880)
No release notes available, but diff: https://gitlab.com/Pythia8/releases/-/compare/pythia8309...pythia8310?from_project_id=12340057&straight=false
2023-12-29 14:53:17 -07:00
Adam J. Stewart
952df640ab
py-pyzmq: fix import tests (#41869) 2023-12-29 10:01:11 +01:00
Todd Gamblin
6420e5ce79
papi: only patch flag issue for 7.1.0 (#41892)
PAPI CI checks a `spack install` of `papi@master`, and the open range here breaks their
CI with the fix because the patch is no longer needed (see #26784, #27625 for why it's
difficult to avoid this).

The patch issue is going to be fixed in PAPI upstream with whatever release is after
`7.1.0`, so we can restrict the patch to `7.1.0` and avoid this issue.
2023-12-28 20:53:05 -08:00
kwryankrattiger
a1e86781bd
CI: Fix timing search paths to ignore bootstrap (#41893) 2023-12-28 20:43:12 -08:00
kwryankrattiger
d52fda6015
CI: Fix timing search paths to ignore bootstrap (#40677) 2023-12-28 16:24:37 -08:00
Todd Gamblin
379eeda576
shell: fix zsh color formatting for PS1 in environments (#39497)
* shell: fix zsh color formatting for PS1 in environments

The `colorize` function in `llnl.util.tty.color` only applies proper formatting for Bash
ANSI and for console output, but this is not what zsh expects for environment variables.

In particular, when using `zsh`, `spack env activate -p` produces a `PS1` prompt that
looks like this:

```
\[\033[0;92m\][ENVIRONMENT]\[\033[0m\]
```

For zsh the formatting should be:

```
\e[0;92m[ENVIRONMENT]\e0;m
```

- [x] Add a `zsh` option to `colorize()` to enable zsh color formatting
- [x] Add conditional to choose the right `PS1` for `zsh`, `bash`, and `sh`
- [x] Don't use color escapes for `sh`, as they don't print properly

* convert lots of += lines to triple quotes
2023-12-28 15:36:30 -08:00
Felix Werner
fc1e0178bf
xcdf: add newly released v3.01 with Python 3 support (#41808) 2023-12-28 13:11:04 +01:00
Ben Wibking
1c09d0ac9b
visit: add missing header includes needed for GUI build (#41534) 2023-12-28 11:38:56 +01:00
Arne Becker
987a63ed94
perl-json-maybexs: add new package (#41703) 2023-12-28 11:34:08 +01:00