Commit graph

34322 commits

Author SHA1 Message Date
Peter Scheibel
a2dc11acd3
update an everywhere-but-windows check to include freebsd (#41819) 2023-12-22 14:11:04 -06:00
Alec Scott
2f0df0131c
Fix a couple typos in the docs (#41822) 2023-12-22 14:08:53 -06:00
Adam J. Stewart
dd8941abc9
py-keras: add v3.0.2 (#41827) 2023-12-22 14:07:09 -06:00
Adam J. Stewart
b341030a0f
py-mypy: add v1.8.0 (#41831) 2023-12-22 14:05:43 -06:00
Mark Olesen
1d6cea6af2
openfoam: add version 2312 (#41828) 2023-12-22 14:04:02 -06:00
Wileam Y. Phan
327a7a4031
Add PAPI 7.0.1 and 7.1.0 (#38443)
* Add PAPI 7.0.1

* Add comment about skipping PAPI 7.0.0

* Add patch to avoid adding Intel ifort/ifx flag on Cray ftn

* Modify patch to include Cray-specific flags

* Adjust recipe to always apply patch for 7.0.1

* Expand Cray compiler checks in patch

* Forgot to update recipe

* Adjust recipe so it looks for hipcc in the correct path

* Revert "Adjust recipe so it looks for hipcc in the correct path"

This reverts commit 0db3df4fe2874cea7d0e31fee1709246db668499.

* Patch HIP_PATH to work with Spack-built HIP

* Patch LDFLAGS with llvm-amdgpu path

* Forgot the depends_on line

* libomptarget only builds with clang

* Try a self-consistent build of llvm-amdgpu

* Try making llvm-amdgpu depend on llvm for llvmoffloadarch library

* Update prereq to use rocm-openmp-extras instead

* Refactor llvm-amdgpu to use a version dict

* Fix typo

* Hack to exclude older versions without matching rocm-openmp-extras

* Add PAPI 7.1.0

* Revert changes to llvm-amdgpu

* Fix PAPI 7.1.0 checksum
2023-12-22 13:58:06 -06:00
Alec Scott
6ac75f47e8
Use white logo or dark backgrounds (#41836) 2023-12-22 12:47:48 -07:00
Alec Scott
843346ce1b
Update README.md formatting (#41813)
* Update README.md formatting

* Add docs and bootstrapping status and left align

* Update vertical badge spacing

* Update vertical logo spacing
2023-12-22 08:09:54 -08:00
Adam J. Stewart
23f03966b4
Remove deprecated versions from packages (#41031)
For now, this only includes packages that I personally maintain.

Notable removals:

* Anaconda 2
* Catalyst
* Ancient numpy/scipy
* Ancient PyTorch
* Ancient Bazel/TF
2023-12-22 08:01:33 -08:00
Tim Fuller
4540980337
Fix variant initialization logic to allow proper handling of values="*" (#40406)
Co-authored-by: psakiev <psakiev@sandia.gov>
Co-authored-by: tjfulle <tjfulle@users.noreply.github.com>
2023-12-22 16:10:43 +01:00
Laurent Aphecetche
ec9d08e71e
llvm: fix llvm@14 build with apple-clang-15 (#40191)
* llvm: fix llvm@14 build with apple-clang-15

* fix formatting

---------

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-12-22 05:03:23 -07:00
Simon Pintarelli
397c066464
costa: add missing dependency (#41829) 2023-12-22 12:44:18 +01:00
Adam J. Stewart
4d1b5d6a88
GDAL: add v3.8.2 (#41795) 2023-12-22 10:11:11 +01:00
pelesh
0cae943b5c
ReSolve: Add version 0.99.1 (#41802)
* ReSolve: Add version 0.99.1

* [@spackbot] updating style on behalf of pelesh

---------

Co-authored-by: pelesh <pelesh@users.noreply.github.com>
2023-12-22 10:07:30 +01:00
Sam Gillingham
78c6c607db
kealib: add version 1.5.3 (#41804) 2023-12-22 10:02:07 +01:00
Todd Gamblin
0da1fae709
Consolidate definition of Spack's extra sys.path components (#41816)
To work properly, Spack requires a few directories from its repository to be added to
`sys.path`. Previously these were buried in `spack_installable.main.main()`, but it's
sometimes useful to get the paths separately, e.g., if you want to set up your own
functioning spack environment.

With this change, adding the paths is much simpler:

```python
import spack_installable
sys.path[:0] = get_spack_sys_paths(spack_prefix)
```

- [x] Add `get_spack_sys_paths()` method with extra paths in order.
- [x] Refactor `spack_installable.main.main()` to use it.
2023-12-21 16:25:12 -08:00
John W. Parent
94fc2314f1
sqlite: add NMake build system for Windows (#41761) 2023-12-21 15:18:01 -07:00
John W. Parent
05761de8c7
Improve error reporting when Clingo install is broken (#41181)
With an improper/incomplete/broken installation of Clingo, it can be
importable but not have any of the expected attributes
Improve error reporting in this case
2023-12-21 13:56:09 -08:00
John W. Parent
ecdf3ff297
Tcl: add nmake system for Windows (#41759) 2023-12-21 13:15:49 -08:00
Massimiliano Culpo
ea7e3e4f9f Compilers can inject first order rules into the solver
* Restore PackageBase class, and modify only ASP

  This prevents a noticeable slowdown in concretization
  due to the number of directives involved.

* Fix issue with 'clang' being preferred to 'gcc',
  due to runtime version weights

* Constraints on runtimes are declared by compilers

  The declaration of available runtime versions, and of
  their compatibility constraints are in the associated
  compiler class.

Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
2023-12-21 12:22:58 -08:00
Harmen Stoppels
8371bb4e19 gcc-runtime: add separate package for gcc runtime libs
The gcc-runtime package adds a separate node for gcc's dynamic runtime
libraries.

This should help with:

1. binary caches where rpaths for compiler support libs cannot be
   relocated because the compiler is missing on the target system
2. creating "minimal" container images

The package is versioned like `gcc` (in principle it could be
unversioned, but Spack doesn't always guarantee not mixing compilers)
2023-12-21 12:22:58 -08:00
Todd Gamblin
0a5f2fc94d
specs: Better error messages for badly quoted specs (#41805)
If you are calling Spack from the python API, you might have written something like this
before #41529:

```
find = SpackCommand("find")
find('--format={name}', 'saxpy@1.0.0', '+rocm', 'amdgpu_target="gfx90a"')
```

But with the breaking change in #41529, you should write:

```
find = SpackCommand("find")
find('--format={name}', 'gromacs', '+rocm', 'amdgpu_target=gfx90a')
```

Note that we don't need quotes in Python strings, and that this is what would come in
via argv if you typed a quoted variant on the CLI.

The error messages for strings like this are not great -- you get something like this:

```
==> No package matches the query: gromacs+rocm amdgpu_target="gfx90a"
```

Which doesn't indicate that the issue might be your quoting. This is because we were
simply outputting the argv we got, instead of using spec.format() to output the error
message. This PR fixes such errors to use `spec.format()` and to look like this:

```
==> No package matches the query: gromacs+rocm amdgpu_target='"gfx90a"'
```

So users should have an easier time understanding that Spack considers the variant value
to contain quotes here.

- [x] update ConstraintAction to store parsed Specs
- [x] refactor commands to display formatted parsed Specs instead of raw input
2023-12-21 09:06:06 -08:00
Andrey Perestoronin
45b2c207db
intel-oneapi-compilers and intel-oneapi-ccl: added new version to packages (#41807)
* added new packages

* compiler package

* fix link in ccl

* fix another links in ccl
2023-12-21 08:23:08 -07:00
Harmen Stoppels
e7f897f959
ci: use "strong preference" idiom for compilers (#41806)
to avoid duplication of conflicts / requirements in config
2023-12-21 12:50:35 +01:00
Harmen Stoppels
1aaab97a16
Only reuse externals when configured (#41707)
Users expect that changes to the externals sections in packages.yaml config apply immediately, but reuse concretization caused this not to be the case. With this commit, the concretizer is only allowed to reuse externals previously imported from config if identical config exists.
2023-12-20 19:21:15 +00:00
Christopher Christofi
3053e701c0
fix attribute error in perl build-system (#41628) 2023-12-20 09:42:45 -08:00
Massimiliano Culpo
20572fb87b
Add missing import to packages (#41791) 2023-12-20 09:33:12 -07:00
Harmen Stoppels
7e2e063979
containers.rst: small docs improvement (#41792) 2023-12-20 11:54:41 +01:00
Harmen Stoppels
16e27ba4a6
spack buildcache push --tag: create container image with multiple roots (#41077)
This PR adds a flag `--tag/-t` to `buildcache push`, which you can use like

```
$ spack mirror add my-oci-registry oci://example.com/hello/world
$ spack -e my_env buildcache push --base-image ubuntu:22.04 --tag my_custom_tag my-oci-registry
```

and lets users ship a full, installed environment as a minimal container image where each image layer is one Spack package, on top of a base image of choice. The image can then be used as

```
$ docker run -it --rm example.com/hello/world:my_custom_tag
```

Apart from environments, users can also pick arbitrary installed spec from their database, for instance:

```
$ spack buildcache push --base-image ubuntu:22.04 --tag some_specs my-oci-registry gcc@12 cmake
$ docker run -it --rm example.com/hello/world:some_specs
```

It has many advantages over `spack containerize`:

1. No external tools required (`docker`, `buildah`, ...)
2. Creates images from locally installed Spack packages (No need to rebuild inside `docker build`, where troubleshooting build failures is notoriously hard)
3. No need for multistage builds (Spack just tarballs existing installations of runtime deps)
4. Reduced storage size / composability: when pushing multiple environments with common specs, container image layers are shared.
5. Automatic build cache: later `spack install` of the env elsewhere speeds up since the containerized environment is a build cache
2023-12-20 11:31:41 +01:00
Massimiliano Culpo
2fda288cc5
Fujitsu packages: require %fj (#41755)
These packages were written before the "requires" directive,
and so they are conflicting with all compilers but Fujitsu
to express they _require_ `%fj`
2023-12-20 11:15:36 +01:00
Massimiliano Culpo
9986652b27
Add detection tests for XL compilers (#41743) 2023-12-20 11:15:15 +01:00
Chris Marsh
fd46923216
GDAL: Ensure a spack libproj is used instead of a system libproj (#41785)
* Ensure a spack libproj is used instead of a system libproj when libproj < 8.
spack/spack/issues/41299

* Fix style as per ci-bot

* Fix style as per ci-bot

* Ensure 3.5:3.8.

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

---------

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-12-19 23:43:20 -07:00
Andrey Perestoronin
bb2975b7f1
intel-oneapi-compilers 2024.0.2 (#41778)
* new compiler packages

* Fix ifort version number

---------

Co-authored-by: Robert Cohn <rscohn2@gmail.com>
2023-12-19 23:08:20 -07:00
Annop Wongwathanarat
1168f19e60
Require target=x86_64 for some packages (#41633)
This resolves issue #41148
2023-12-19 17:50:49 -07:00
Peter Scheibel
5d50ad3941
"spack diff": add ignore option for dependencies (#41711)
* add trim function to `Spec` and `--ignore` option to 'spack diff'

Allows user to compare two specs while ignoring the sub-DAG of a particular dependency, e.g.

spack diff --ignore=mpi --ignore=zlib trilinos/abcdef trilinos/fedcba

to focus on differences closer to the root of the software stack
2023-12-19 16:37:44 -08:00
kwryankrattiger
a43156a861
CI: Disable downloading artifacts from upstream jobs (#41432)
* CI: Disable downloading artifacts from upstream jobs

* CI: Default .base-jobs are `when:manual`
2023-12-19 15:53:28 -07:00
Harmen Stoppels
ec2729706b
environment_modifications_for_specs: do not mutate spec.prefix (#41737)
Sometimes env variables computed in `setup_run_environment` depend on tests
w.r.t. files in `spec.prefix`, but Spack temporarily projects `spec.prefix` to
the view. 

This is problematic for two reasons:

1. Some packages iterate over `<prefix>/bin`: they expect only the current
   package's executables, but find all linked in the view, leading to false
   positives.
2. Some packages test for `os.path.islink(...)`, which is always true in a view

`gcc` is an example that does both.

This PR lets Spack compute the environment modifications using the original
prefix, and projects to the view afterwards
2023-12-19 23:33:16 +01:00
Dom Heinzeller
494d3f9002
Skip 'icc.patch' in var/spack/repos/builtin/packages/py-gevent/package.py for py-gevent@23.7.0+ (#41568) 2023-12-19 12:44:29 -06:00
Harmen Stoppels
4f8b856145
e4s: add julia (#41768) 2023-12-19 18:17:54 +01:00
Massimiliano Culpo
0eca79e7e4
Add an audit to prevent virtual packages with variants specified (#41747)
Currently, a virtual spec is composed of just a name and a version. When a virtual spec contains other components, such as variants, Spack won't emit warnings or errors but will silently drop them - which is unexpected by users.
2023-12-19 18:05:33 +01:00
Ben Wibking
f245bde772
adios2: fix build failure in 2.7.1 (#41753) 2023-12-19 17:58:05 +01:00
Mikael Simberg
4aee067bb0
umpire: backport -fcompare-debug-second flag removal (#41506) 2023-12-19 17:24:52 +01:00
Martin Aumüller
cc25a0e561
ffmpeg: mostly build fixes (#41050) 2023-12-19 17:23:23 +01:00
Aiden Grossman
3f063153f0
openblas: add patches to build with clang (#39138) 2023-12-19 17:22:29 +01:00
Dr Marco Claudio De La Pierre
aa350a4ed1
removing deprecated: recipes tower-agent and tower-cli, as nf- prefixed recipes available (#41576)
Signed-off-by: Dr Marco Claudio De La Pierre <marco.delapierre@seqera.io>
2023-12-19 17:16:26 +01:00
Brian Van Essen
e36bee41a0
lbann: relax the requirement on protobuf (#41591) 2023-12-19 17:16:04 +01:00
dependabot[bot]
138d0c7a13
build(deps): bump black from 23.11.0 to 23.12.0 in /lib/spack/docs (#41615)
Bumps [black](https://github.com/psf/black) from 23.11.0 to 23.12.0.
- [Release notes](https://github.com/psf/black/releases)
- [Changelog](https://github.com/psf/black/blob/main/CHANGES.md)
- [Commits](https://github.com/psf/black/compare/23.11.0...23.12.0)

---
updated-dependencies:
- dependency-name: black
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2023-12-19 17:14:05 +01:00
Thomas-Ulrich
a688479564
easi: specify better the impalajit dependency (#41637) 2023-12-19 17:08:22 +01:00
Wouter Deconinck
5ead4c2d56
pcre: ensure consistency between autotools and cmake builds (#41644)
Co-authored-by: wdconinc <wdconinc@users.noreply.github.com>
2023-12-19 16:57:59 +01:00
Richard Berger
2e18fbbdeb
legion: do not set HIP_PATH env variable (#41660)
* legion: do not set HIP_PATH env variable

* flecsi: workaround Legion CMake for +rocm
2023-12-19 16:14:19 +01:00