Commit graph

6483 commits

Author SHA1 Message Date
Todd Gamblin
9e54134daf
docs: Replace package list with packages.spack.io (#40251)
For a long time, the docs have generated a huge, static HTML package list. It has some
disadvantages:

* It's slow to load
* It's slow to build
* It's hard to search

We now have a nice website that can tell us about Spack packages, and it's searchable so
users can easily find the one or two packages out of 7400 that they're looking for. We
should link to this instead of including a static package list page in the docs.

- [x] Replace package list link with link to packages.spack.io
- [x] Remove `package_list.html` generation from `conf.py`.
- [x] Add a new section for "Links" to the docs.
- [x] Remove docstring notes from contribution guide (we haven't generated RST
      for package docstrings for a while)
- [x] Remove referencese to `package-list` from docs.
2023-10-01 05:36:22 +02:00
John W. Parent
7d072cc16f
Windows: detect all available SDK versions (#39823)
Currently, Windows SDK detection will only pick up SDK versions
related to the current version of Windows Spack is running on.
However, in some circumstances, we want to detect other version
of the SDK, for example, for compiling on Windows 11 for Windows
10 to ensure an API is compatible with Win10.
2023-09-29 20:17:10 +00:00
Peter Scheibel
3969653f1b
Cray manifest: compiler handling fixes (#40061)
* Make use of `prefix` in the Cray manifest schema (prepend it to
  the relative CC etc.) - this was a Spack error.
* Warn people when wrong-looking compilers are found in the manifest
  (i.e. non-existent CC path).
* Bypass compilers that we fail to add (don't allow a single bad
  compiler to terminate the entire read-cray-manifest action).
* Refactor Cray manifest tests: module-level variables have been
  replaced with fixtures, specifically using the `test_platform`
  fixture, which allows the unit tests to run with the new
  concretizer.
* Add unit test to check case where adding a compiler raises an
  exception (check that this doesn't prevent processing the
  rest of the manifest).
2023-09-29 09:47:30 -07:00
Jordan Galby
db37672abf
Print error when missing git (#40254)
Like a missing curl.
2023-09-29 15:14:39 +00:00
Harmen Stoppels
605835fe42
Don't drop build deps on overwrite install (#40252)
If you `spack install x ^y` where `y` is a pure build dep of `x`, and
then uninstall `y`, and then `spack install --overwrite x ^y`, the build
fails because `y` is not re-installed.

Same can happen when you install a develop spec, run `spack gc`,
modify sources, and install again; develop specs rely on overwrite
install to work correctly.
2023-09-29 16:40:21 +02:00
Massimiliano Culpo
210d221357
Test package detection in a systematic way (#18175)
This PR adds a new audit sub-command to check that detection of relevant packages
is performed correctly in a few scenarios mocking real use-cases. The data for each 
package being tested is in a YAML file called detection_test.yaml alongside the 
corresponding package.py file.

This is to allow encoding detection tests for compilers and other widely used tools, 
in preparation for compilers as dependencies.
2023-09-29 10:24:42 +02:00
Massimiliano Culpo
a236fce31f
Partial removal of circular dependencies between spack and llnl (#40090)
Modifications:
- [x] Move `spack.util.string` to `llnl.string`
- [x] Remove dependency of `llnl` on `spack.error`
- [x] Move path of `spack.util.path` to `llnl.path`
- [x] Move `spack.util.environment.get_host_*` to `spack.spec`
2023-09-28 16:21:52 +00:00
Harmen Stoppels
6d55066b94
Use st_nlink in hardlink tracking (#39328)
Only add potential hardlinks to a set/dict, instead of each file. This
should be much cheaper, since hardlinks are very rare.
2023-09-28 13:24:56 +00:00
Brian Vanderwende
fba47e87d7
Support optional vars script arguments (#40064) 2023-09-28 06:52:22 -04:00
Harmen Stoppels
5c25437c9f
spack --profile: dump to stderr (#40209) 2023-09-26 16:18:47 +02:00
dependabot[bot]
37c48fc82c
build(deps): bump urllib3 from 2.0.4 to 2.0.5 in /lib/spack/docs (#40119)
Bumps [urllib3](https://github.com/urllib3/urllib3) from 2.0.4 to 2.0.5.
- [Release notes](https://github.com/urllib3/urllib3/releases)
- [Changelog](https://github.com/urllib3/urllib3/blob/main/CHANGES.rst)
- [Commits](https://github.com/urllib3/urllib3/compare/2.0.4...v2.0.5)

---
updated-dependencies:
- dependency-name: urllib3
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2023-09-24 17:35:48 +02:00
Harmen Stoppels
716196930a
Remove distutils dependency in Spack (#40153)
* msvc.py: don't import distutils

Introduced in #27021, makes Spack forward incompatible with Python.

The module was already deprecated at the time of the PR.

* update spack package
2023-09-22 13:04:58 +02:00
Adam J. Stewart
419878f035
Add support for macOS Sonoma (#40115) 2023-09-22 04:21:26 -05:00
John W. Parent
aeaca77630
Harden compiler detection against errors (#39736)
Fixes #39622

Add a timeout to compiler detection and allow Spack to proceed when
this timeout occurs.

In all cases, the timeout is 120 seconds: it is assumed any compiler
invocation we do for the purposes of verifying it would resolve in
that amount of time.

Also refine executables that are tested as being possible MSVC
instances, and limit where we try to detect MSVC. In more detail:

* Compiler detection should timeout after a certain period of time.
  Because compiler detection executes arbitrary executables on the
  system, we could encounter a program that just hangs, or even a
  compiler that hangs on a license key or similar. A timeout
  prevents this from hanging Spack.
* Prevents things like cl-.* from being detected as potential MSVC
  installs. cl is always just cl in all cases that Spack supports.
  Change the MSVC class to indicate this.
* Prevent compilers unsupported on certain platforms from being
  detected there (i.e. don't look for MSVC on systems other than
  Windows).

The first point alone is sufficient to address #39622, but the
next two reduce the likelihood of timeouts (which is useful since
those slow down the user even if they are survivable).
2023-09-21 10:42:12 -07:00
Massimiliano Culpo
abad16c198
Restore virtuals normalization on edge construction (#40130)
Put back normalization of the "virtuals" input as a sorted tuple. 

Without this we might get edges that differ just for the order of 
virtuals, or that have lists, which are not hashable.

Add unit-tests to prevent regressions.
2023-09-21 17:02:34 +02:00
Massimiliano Culpo
e963d02a07
Fix a leftover typo from depflag rework (#40101) 2023-09-20 14:16:53 +00:00
Marc Mengel
e1b22325ea
Add details on error messages from requirements (#40092) 2023-09-20 06:16:29 +02:00
Massimiliano Culpo
3b4ca0374e
Use process pool executors for web-crawling and retrieving archives (#39888)
Fix a race condition when searching urls, and updating a shared
set '_visited'.
2023-09-19 15:32:59 +02:00
Massimiliano Culpo
4f14db19c4
ASP-based solver: declare deprecated versions iff config:deprecated:true (#40011)
By default, do not let deprecated versions enter the solve.

Previously you could concretize to something deprecated, only to get errors on install.

With this commit, we get errors on concretization, so the issue is caught earlier.
2023-09-19 09:44:49 +00:00
Adam J. Stewart
dbd520f851
Better detection of Python libs/headers (#39308) 2023-09-18 15:46:33 -07:00
Michael Kuhn
be3f7b5da3
checksum: use FIXME instead of FIX ME when adding versions (#40050)
The former is highlighted by editors, while the latter is not.
2023-09-18 17:31:11 +02:00
Caetano Melone
76816d722a
CI: add spec to job vars (#39905)
* CI: add details about built spec to ci job variables

Co-authored-by: Alec Scott <alec@bcs.sh>
Co-authored-by: Alec Scott <hi@alecbcs.com>
2023-09-15 14:40:00 -06:00
John W. Parent
060bc01273
Windows RPATHing: fix symlink error (#39933)
With 349ba83, you cannot symlink() if the link already exists.
Update the simulated RPATHing logic on Windows to account for that.
2023-09-15 12:55:18 -07:00
Massimiliano Culpo
fb9e5fcc4f
Group primitive url/path handling functions together (#40028) 2023-09-15 15:43:23 +02:00
dependabot[bot]
74a6c48d96
build(deps): bump sphinx from 7.2.5 to 7.2.6 in /lib/spack/docs (#40029)
Bumps [sphinx](https://github.com/sphinx-doc/sphinx) from 7.2.5 to 7.2.6.
- [Release notes](https://github.com/sphinx-doc/sphinx/releases)
- [Changelog](https://github.com/sphinx-doc/sphinx/blob/master/CHANGES.rst)
- [Commits](https://github.com/sphinx-doc/sphinx/compare/v7.2.5...v7.2.6)

---
updated-dependencies:
- dependency-name: sphinx
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2023-09-15 09:51:51 +02:00
Massimiliano Culpo
34402beeb7
Ensure PythonExtension is consistent when finding externals (#40012)
PythonExtension is a base class for PythonPackage, and
is meant to be used for any package that is a Python
extension but is not built using "python_pip".

The "update_external_dependency" method in the base
class calls another method that is defined in the derived
class.

Push "get_external_python_for_prefix" up in the hierarchy
to make method calls consistent.
2023-09-14 18:26:40 +02:00
Harmen Stoppels
6838ee6bb8
Add efficient deptype flag and spack.deptypes module (#39472)
This commit replaces the internal representation of deptypes with `int`, which is more compact
and faster to operate with.

Double loops like:
```
any(x in ys for x in xs)
```
are replaced by constant operations bool(xs & ys), where xs and ys are dependency types. 

Global constants are exposed for convenience in `spack.deptypes`
2023-09-14 12:25:24 +02:00
Harmen Stoppels
d7b5a27d1d
Revert "ASP-based solver: don't declare deprecated versions unless required (#38181)" (#40010)
This reverts commit babd29da50.
2023-09-13 23:33:55 +02:00
Massimiliano Culpo
babd29da50
ASP-based solver: don't declare deprecated versions unless required (#38181)
Currently, the concretizer emits facts for all versions known to Spack, including deprecated versions, and has a specific optimization objective to minimize their use.

This commit simplifies how deprecated versions are handled by considering possible versions for a spec only if they appear in a spec literal, or if the `config:deprecated:true` is set directly or through the `--deprecated` flag. The optimization objective has also been removed, in favor of just ordering versions and having deprecated ones last.

This results in:

a) no delayed errors on install, but concretization errors when deprecated versions would be the only option. This is in particular relevant for CI where it's better to get errors early
b) a slight concretization speed-up due to fewer facts
c) a simplification of the logic program.

Co-authored-by: Harmen Stoppels <me@harmenstoppels.nl>
2023-09-13 18:15:57 +02:00
Massimiliano Culpo
c4e2d24ca9
Spec.tree: add type hints (#39948) 2023-09-13 11:53:14 +02:00
Massimiliano Culpo
60a5f70b80
Fix typo in metaclasses (#39947) 2023-09-12 22:53:21 +02:00
Harmen Stoppels
a009a1a62a
asp.py: fix deprecation warning (#39943) 2023-09-12 09:27:03 +00:00
dependabot[bot]
28a3be3eca
build(deps): bump black from 23.7.0 to 23.9.1 in /lib/spack/docs (#39937)
Bumps [black](https://github.com/psf/black) from 23.7.0 to 23.9.1.
- [Release notes](https://github.com/psf/black/releases)
- [Changelog](https://github.com/psf/black/blob/main/CHANGES.md)
- [Commits](https://github.com/psf/black/compare/23.7.0...23.9.1)

---
updated-dependencies:
- dependency-name: black
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2023-09-12 07:44:19 +02:00
Massimiliano Culpo
3302b176fd
Update archspec to latest commit (#39920)
- [x] Intel flags for old architectures
- [x] Support for Sapphire Rapids
- [x] Cache the "ancestors" computation
2023-09-11 10:03:35 -07:00
John W. Parent
fc391d5332
NMake Builder: change property name (#39824)
NMake makefiles are still called makefiles. The corresponding builder
variable was called "nmakefile", which is a bit unintuitive and lead
to a few easy-to-make, hard-to-notice mistakes when creating packages.
This commit renames the builder property to be "makefile"
2023-09-08 11:23:13 -07:00
Dan Lipsa
9e7fe04a77
Windows decompression: fix removal of intermediate file (#38958)
Extensionless archives requiring two-stage decompression and extraction
require intermediate archives to be renamed after decompression/extraction
to prevent collision. Prior behavior attempted to cleanup the intermediate
archive with the original name, this PR ensures the renamed folder is
cleaned instead.

Co-authored-by: Dan Lipsa <dan.lipsa@khq.kitware.com>
Co-authored-by: John Parent <john.parent@kitware.com>
2023-09-08 10:27:43 -07:00
Massimiliano Culpo
39b9f214a8
Speed-up spack external find execution (#39843)
* Perform external spec detection with multiple workers

The logic to perform external spec detection has been refactored
into classes. These classes use the GoF "template" pattern to account
for the small differences between searching for "executables" and
for "libraries", while unifying the larger part of the algorithm.

A ProcessPoolExecutor is used to parallelize the work.

* Speed-up external find by tagging detectable packages automatically

Querying packages by tag is much faster than inspecting the repository,
since tags are cached. This commit adds a "detectable" tag to every
package that implements the detection protocol, and external detection
uses it to search for packages.

* Pass package names instead of package classes to workers

The slowest part of the search is importing the Python modules
associated with candidate packages. The import is done serially
before we distribute the work to the pool of executors.

This commit pushes the import of the Python module to the job
performed by the workers, and passes just the name of the packages
to the executors.

In this way imports can be done in parallel.

* Rework unit-tests for Windows

Some unit tests were doing a full e2e run of a command
just to check a input handling. Make the test more
focused by just stressing a specific function.

Mark as xfailed 2 tests on Windows, that will be fixed
by a PR in the queue. The tests are failing because we
monkeypatch internals in the parent process, but the
monkeypatching is not done in the "spawned" child
process.
2023-09-08 09:25:50 +02:00
dependabot[bot]
a4d2f8332f
build(deps): bump pytest from 7.4.1 to 7.4.2 in /lib/spack/docs (#39883)
Bumps [pytest](https://github.com/pytest-dev/pytest) from 7.4.1 to 7.4.2.
- [Release notes](https://github.com/pytest-dev/pytest/releases)
- [Changelog](https://github.com/pytest-dev/pytest/blob/main/CHANGELOG.rst)
- [Commits](https://github.com/pytest-dev/pytest/compare/7.4.1...7.4.2)

---
updated-dependencies:
- dependency-name: pytest
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2023-09-08 08:16:19 +02:00
Tamara Dahlgren
007f02e06a
Docs/Packaging guide: Add BundlePackage (#39691)
* Docs/Packaging guide: Add BundlePackage
* Adjusted version ordering note to reflect convention.
2023-09-07 19:45:51 -07:00
kwryankrattiger
8ec1657136
CI Timing Statistics (#38598)
* Write timing information for installs from cache

* CI: aggregate and upload install_times.json to artifacts

* CI: Don't change root directory for artifact generation

* Flat event based timer variation

Event based timer allows for easily starting and stopping timers without
wiping sub-timer data. It also requires less branching logic when
tracking time.

The json output is non-hierarchical in this version and hierarchy is
less rigidly enforced between starting and stopping.

* Add and write timers for top level install

* Update completion

* remove unused subtimer api

* Fix unit tests

* Suppress timing summary option

* Save timers summaries to user_data artifacts

* Remove completion from fish

* Move spack python to script section

* Write timer correctly for non-cache installs

* Re-add hash to timer file

* Fish completion updates

* Fix null timer yield value

* fix type hints

* Remove timer-summary-file option

* Add "." in front of non-package timer name

---------

Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
Co-authored-by: Harmen Stoppels <me@harmenstoppels.nl>
2023-09-07 15:41:31 -05:00
Harmen Stoppels
7bd95f6ad3
move determine_number_of_jobs into spack.util.cpus, use it in concretize (#37620) 2023-09-07 13:16:51 +02:00
Rémi Lacroix
b81aa42179
CUDA 10.1/10.2: Fix conflicts with PGI 19+. (#39747)
The condition probably did not get updated when the behavior of the version specifier changed.
2023-09-07 00:58:19 -04:00
Dominic Hofer
3b1b261cd8
Handles case of empty craype_dir (#39371)
The craype_dir folder can be empty. It happens to be the case on Arolla and Tsa at CSCS.
2023-09-06 11:54:42 -07:00
John W. Parent
40c4c81c19
"spack config add": support values with ":" (#39831)
This is a fixed version of b72a268

* That commit would discard the final key component (so if you set
  "config:install_tree:root", it would discard "root" and just set
  install tree).
* When setting key:"value", with the quotes, that commit would
  discard the quotes, which would confuse the system if adding a
  value like "{example}" (the "{" character indicates a dictionary).
  This commit retains the quotes.
2023-09-06 18:44:00 +00:00
Adam J. Stewart
8b5b4ade0e
CMakePackage: remove -DBUILD_TESTING flag (#37967) 2023-09-05 18:29:34 -05:00
Harmen Stoppels
f8676db7f4
Revert ""spack config add": allow values with a ":" (#39279)" (#39825)
This reverts commit b72a268bc5.
2023-09-05 20:07:16 +02:00
Wouter Deconinck
cf031e83f0
compilers/gcc.py: support cxx{20,23}_flag (#39777) 2023-09-05 17:09:22 +02:00
Massimiliano Culpo
818c9aeb5a
Add type-hints to the spack.detection package (#39803) 2023-09-05 14:19:57 +02:00
dependabot[bot]
189cd59d13
build(deps): bump pytest from 7.4.0 to 7.4.1 in /lib/spack/docs (#39790)
Bumps [pytest](https://github.com/pytest-dev/pytest) from 7.4.0 to 7.4.1.
- [Release notes](https://github.com/pytest-dev/pytest/releases)
- [Changelog](https://github.com/pytest-dev/pytest/blob/main/CHANGELOG.rst)
- [Commits](https://github.com/pytest-dev/pytest/compare/7.4.0...7.4.1)

---
updated-dependencies:
- dependency-name: pytest
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2023-09-05 09:51:41 +02:00
Harmen Stoppels
29aa7117f4
glibc: add package (#39695) 2023-09-04 07:55:57 +02:00