hlrs-software-stack/spack

Author	SHA1	Message	Date
Jim Galarowicz	f9aafeee1e	Loosen the boost requirement from a specific version that was specified in my initial commit.	2016-04-13 21:58:57 -07:00
Jim Galarowicz	2cf9ebc62c	Fix compile issues with new libpng versions and qt3 builds by using an older version of libpng. In libpng, make older versions available.	2016-04-13 15:00:45 -07:00
Adam J. Stewart	5717cb981e	fortran2003 option has been removed from HDF5	2016-04-13 15:03:03 -05:00
Todd Gamblin	2fe9bfcd82	Merge pull request #773 from eschnett/eschnett/julia Update Julia	2016-04-13 12:02:19 +02:00
Todd Gamblin	c96dd43174	Merge pull request #776 from adamjstewart/features/pnetcdf Add latest version of PnetCDF	2016-04-13 01:29:37 +02:00
Tom Scogland	04392babca	add setuptools version 20.7.0	2016-04-12 15:59:20 -07:00
Todd Gamblin	7acc7c4dae	Merge pull request #712 from Rombur/fix_pysetuptools Replace py-setuptools version 20.5 by version 20.6.7	2016-04-13 00:54:51 +02:00
Adam J. Stewart	abe744c5a0	Add latest version of PnetCDF	2016-04-12 16:53:45 -05:00
Adam J. Stewart	01f2dd03d5	Also install examples directory	2016-04-12 16:51:27 -05:00
Adam J. Stewart	cb6c6fb374	Add elk package	2016-04-11 16:28:30 -05:00
Erik Schnetter	882e2e42cf	Merge branch 'develop' into eschnett/julia	2016-04-11 15:40:27 -04:00
Erik Schnetter	df7e3f8635	Correct version dependency for OpenBLAS patch	2016-04-09 09:58:48 -04:00
Massimiliano Culpo	6cffac79bd	openmpi : added a few variants	2016-04-09 11:21:29 +02:00
Ben Boeckel	20b9f34b5c	paraview: use internal hdf5 Spack's HDF5 is too new. Rather than forcing everything in a ParaView chain to use older HDF5, use the internal one until ParaView is patched properly.	2016-04-08 15:09:02 -04:00
Ben Boeckel	6e56ba9f24	paraview: use internal netcdf VTK needs to learn to cope with netcdf being split like this.	2016-04-08 15:08:29 -04:00
Ben Boeckel	3a4aac0213	paraview: use the right cmake variables	2016-04-08 15:08:09 -04:00
Erik Schnetter	f461b99722	Building OpenBLAS requires recent binutils	2016-04-08 14:31:40 -04:00
Ben Boeckel	9eaf735bcd	py-setuptools: add 20.6.7	2016-04-08 12:03:45 -04:00
Ben Boeckel	dcd6b19348	py-setuptools: sort versions	2016-04-08 12:03:36 -04:00
Ben Boeckel	6c409d6b92	py-matplotlib: depend on pkg-config On OS X, freetype isn't found by default, but pkg-config can.	2016-04-08 12:03:05 -04:00
Ben Boeckel	7d19154e18	pkg-config: use the internal glib glib requires pkg-config itself, so on machines without pkg-config, there's a bootstrapping problem.	2016-04-08 12:01:28 -04:00
Todd Gamblin	e73caad0d7	Merge pull request #747 from KineticTheory/pkg-global Package global depends on ncurses	2016-04-07 00:20:15 -07:00
Glenn Johnson	8a7f34665b	Make sure base bioconductor package can be installed.	2016-04-06 23:05:49 -05:00
Geoffrey Oxberry	bbd328d307	metis 5: fix download url Spack picks up the wrong download for metis 5.1.0 from parsing the url field for metis 4.0.3. Add an explicit url field to fix this bug.	2016-04-06 16:58:48 -07:00
Todd Gamblin	4437bae16d	Merge pull request #750 from goxberry/metis-4.0.3 metis 4.0.3	2016-04-06 16:05:02 -07:00
Todd Gamblin	cac819766e	Merge pull request #755 from adamjstewart/features/bash Add bash package	2016-04-06 16:02:10 -07:00
Todd Gamblin	25d48f700c	Merge pull request #752 from KineticTheory/pkg-netlib-lapack Second attempt at PR#741	2016-04-06 16:01:33 -07:00
Geoffrey Oxberry	ddaba07d82	metis 4.0.3 Add version 4.0.3 to metis package. Attempted to implement reasonable versions of all variants declared for metis@5.1.0; some of these do not have analogues in metis@4.0.3, and errors are raised accordingly. Also updated dependencies of packages with depends_on('metis') to depends_on('metis@5:') to ensure that these packages still build.	2016-04-06 15:49:59 -07:00
Glenn Johnson	32779ab1f6	Add r-filehash to test version naming.	2016-04-06 17:02:34 -05:00
Massimiliano Culpo	c113d390a7	mvapich2 : MPI compiler wrapper will use spack compilers during the installation phase mpich : fixed wrong function signature	2016-04-06 23:51:47 +02:00
Glenn Johnson	fbabfc593d	Make R extensable and add a couple of packages for verification. Added R as a build system so that the create template will have the correct configure line. Added a regex for version parsing as the R URLs are a little odd.	2016-04-06 16:44:22 -05:00
Adam J. Stewart	380a2b23e6	Add bash package	2016-04-06 15:57:03 -05:00
Kelly (KT) Thompson	71e9f1ab8d	+ I am resubmitting this proposed change because it was accidentally overwritten. These modifications were accepted as PR#741 but somehow I clobbered them when PR#742 was merged. There was some unintentional overlap in my local repository that I didn't straighten out before pushing.	2016-04-06 09:52:09 -06:00
Todd Gamblin	3c8e055ed0	Merge pull request #751 from davydden/openblas_fix_compiler openblas: provide basename of compilers to avoid issues with detectio…	2016-04-06 02:47:37 -07:00
Denis Davydov	9b3c7b8afa	openblas: provide basename of compilers to avoid issues with detection of Fortran	2016-04-06 10:55:59 +02:00
Dhanannjay 'Djay' Deo	071548a62f	Building VisIt with silo	2016-04-05 23:16:57 -04:00
Dhanannjay Deo	f221f64509	Add variant for shared library	2016-04-05 23:11:18 -04:00
Dhanannjay Deo	c3c70cf704	Install lite pdb headers	2016-04-05 23:11:18 -04:00
Kelly (KT) Thompson	340ad44aab	Merge remote-tracking branch 'upstream/develop' into pkg-exuberant-ctags	2016-04-05 13:31:06 -06:00
Dhanannjay Deo	2e05830eb1	Constrain to vtk6.1 qt4.8.6 and opengl1 rendering backend	2016-04-05 15:12:06 -04:00
Dhanannjay Deo	872f049b30	create visit package	2016-04-05 15:12:06 -04:00
Kelly (KT) Thompson	21ad5162c4	+ Global requires ncurses.	2016-04-05 11:53:37 -06:00
Todd Gamblin	8ef9d68542	Merge pull request #726 from citibeth/efischer/160402-Qt Removed useless url in qt	2016-04-05 10:51:12 -07:00
Jim Galarowicz	0ebb192b2f	Update the MRNet package with the latest source and patch related to the krell tools needs. Also, reorder the list of version to match with the spack standard: newest to oldest.	2016-04-05 10:36:20 -07:00
Jim Galarowicz	ffed252df4	Merge remote-tracking branch 'upstream/develop' into develop	2016-04-05 10:31:41 -07:00
Erik Schnetter	a87ae5173f	Update Julia - allow checking out the master branche - add dependencies requires by important Julia package - add OpenBLAS patch	2016-04-05 09:05:46 -04:00
Todd Gamblin	faf4a1e370	Merge pull request #740 from glennpj/scikit Scikit	2016-04-04 23:11:04 -07:00
Todd Gamblin	b09d87970c	Merge pull request #742 from KineticTheory/pkg-dia Provide dia	2016-04-04 23:09:41 -07:00
Todd Gamblin	cefcbfea8e	Merge pull request #743 from eschnett/eschnett/netlib-scalapack Require cmake	2016-04-04 23:09:24 -07:00
Todd Gamblin	c010a6f8b0	Merge pull request #728 from eschnett/eschnett/hdf5-1.10 Update HDF5 to 1.10.0	2016-04-04 23:09:08 -07:00
Glenn Johnson	c546b75443	Add missing dependency on py-setuptools for - py-dask - py-decorator	2016-04-04 19:23:48 -05:00
Jim Galarowicz	9d2ef9f453	Merge remote-tracking branch 'upstream/develop' into develop	2016-04-04 17:07:53 -07:00
Glenn Johnson	2b3a8a4a5a	Add missing dependencies.	2016-04-04 19:01:44 -05:00
Erik Schnetter	aaf2830b8b	Require cmake	2016-04-04 19:40:05 -04:00
Kelly (KT) Thompson	48d70d960c	+ Provide dia, a program for drawing structured diagrams.	2016-04-04 17:11:04 -06:00
Todd Gamblin	3404a61ebf	Merge pull request #714 from goxberry/ipopt-3.12.4 Add ipopt v3.12.4 package.	2016-04-04 13:42:37 -07:00
Todd Gamblin	2fd2a5403f	Merge pull request #711 from goxberry/mumps-add-libexec Add mpiseq headers to MUMPS installation (was: Add libexec dir to MUMPS installation)	2016-04-04 13:41:55 -07:00
Kelly (KT) Thompson	cd3086f78d	+ Since CBLAS is only provided in 3.6.0 or later, modify package.py to on refer to CBLAS when the latest release is requested.	2016-04-04 14:35:09 -06:00
Glenn Johnson	9c60f122a6	New package - py-scikit-image (http://scikit-image.org/).	2016-04-04 14:02:55 -05:00
Glenn Johnson	8404f084c8	New package - py-networkx (https://networkx.github.io/).	2016-04-04 14:02:55 -05:00
Glenn Johnson	a10ab78e28	New package - py-decorator (https://github.com/micheles/decorator ).	2016-04-04 14:02:55 -05:00
Glenn Johnson	3a4210e9d7	New package - py-dask (http://dask.pydata.org ).	2016-04-04 14:02:55 -05:00
Glenn Johnson	d0ca3952a3	Add version 0.17.1 of scikit-learn.	2016-04-04 14:02:54 -05:00
Erik Schnetter	badf5b047b	Calculate version string in a function	2016-04-04 14:42:36 -04:00
Jim Galarowicz	6ebed7a2a6	Add release 9.1.0 recognition to the Dyninst API package file.	2016-04-04 11:23:51 -07:00
Todd Gamblin	220fb068aa	Merge pull request #724 from davydden/metis_suitesparse_dealii Metis and suitesparse fixes	2016-04-04 11:20:53 -07:00
Todd Gamblin	5084130e71	Merge pull request #715 from citibeth/efischer/160401-EnvironmentModules Added Environment Modules	2016-04-04 10:41:54 -07:00
Jim Galarowicz	e0b9f79b9b	Add changes that remove unsupported libraries from the boost build libraries list based on the boost version numbers. Libraries that are removed include: log - for versions of boost 1.53.0 and older - :atomic - for versions of boost 1.52.0 and older - :locale for versions of boost 1.49.0 and older - :chrono - for versions of boost 1.48.0 and older - and :random - for versions of boost 1.44.0 and older.	2016-04-04 10:33:03 -07:00
Todd Gamblin	a8b856432a	Merge pull request #716 from citibeth/efischer/160401-TclTk Fixed TCL/Tk	2016-04-04 10:24:11 -07:00
Todd Gamblin	266f64d848	Merge pull request #725 from citibeth/efischer/160402-NetCDFCXX Added deprecation warning to netcdf-cxx	2016-04-04 10:18:15 -07:00
Todd Gamblin	2d49842cd1	Merge pull request #730 from citibeth/efischer/160403-PyPillow [WIP] py-pillow: Updated for variants	2016-04-04 10:15:59 -07:00
Todd Gamblin	bd005b6ba6	Merge pull request #727 from glennpj/sympy Added version 1.0 of sympy.	2016-04-04 10:14:13 -07:00
Todd Gamblin	6755c397c9	Merge pull request #729 from citibeth/efischer/160403-LibxcbDependency libxcb: Added comments on two dependencies Spack does not yet know ho…	2016-04-04 10:13:45 -07:00
Todd Gamblin	932ed6b280	Merge pull request #731 from citibeth/efischer/160403-GitDependency git: added comment about newly discovered dependency	2016-04-04 10:13:15 -07:00
Todd Gamblin	a43cb60097	Merge pull request #733 from citibeth/efischer/160403-DbusDependency dbus: Added missing dependency (expat)	2016-04-04 10:12:47 -07:00
Bruno Turcksin	7197f15783	Add version 2.6.7 of py-setuptools	2016-04-04 10:15:00 -04:00
alalazo	d375ddadc4	openssl : reads newer version from ftp (recommended on openssl web-site)	2016-04-04 12:25:13 +02:00
Todd Gamblin	bb968fc5a2	Fix #620 , Resolve #664 . Fix issues with build environment. - Also added better regression tests for build environment.	2016-04-04 02:52:38 -07:00
Denis Davydov	131d34f318	suite-sparse: temporary disable TBB due to linking errors	2016-04-04 09:05:27 +02:00
Elizabeth F	14f073d410	py-pillow: Updated for variants, but still having trouble getting it to use Spack-supplied libjpeg.	2016-04-03 21:42:55 -04:00
Elizabeth F	0bf61ad57b	libxcb: Added comments on two dependencies Spack does not yet know how to build.	2016-04-03 21:42:40 -04:00
Elizabeth F	2809fe95db	git: added comment about newly discovered dependency	2016-04-03 21:42:29 -04:00
Elizabeth F	c3f7b035fd	dbus: Added missing dependency (expat)	2016-04-03 21:42:09 -04:00
citibeth	79836520d9	Fixed up to work on a machine without any system-install tcl.	2016-04-03 21:38:29 -04:00
Denis Davydov	e0ff3f16cc	dealii: blacklist boost	2016-04-03 19:41:51 +02:00
Elizabeth Fischer	40c279ef95	Fixed evil non-ASCII quotes	2016-04-03 00:10:22 -04:00
Erik Schnetter	e436f84244	Update HDF5 to 1.10.0	2016-04-02 20:22:26 -04:00
Glenn Johnson	c952c0ca16	Added version 1.0 of sympy. Beginning with this version, sympy requires the mpmath package. The py-mpmath package is added in this PR to accommodate that.	2016-04-02 15:50:20 -05:00
citibeth	1c483ffe4e	Merged the best of two Spack packages for Environment Modules. Named "environment-modules" to be consistent with Fedora and Ubuntu repositories. See `d96ea5b` for original packages/modules/package.py	2016-04-02 13:09:56 -04:00
citibeth	9f7db44574	Removed useless url in qt	2016-04-02 12:58:37 -04:00
citibeth	2126683203	Added deprecation warning to netcdf-cxx	2016-04-02 12:55:34 -04:00
Denis Davydov	adccd18015	dealii: add extra test for Petsc+Metis	2016-04-02 12:04:18 +02:00
Denis Davydov	a88c6da9ac	suite-sparse: fix a bug where interla metis was used; add TBB variant	2016-04-02 12:04:07 +02:00
Denis Davydov	624b576b1e	metis: fix compilation with Clang 7.3.0, add tests	2016-04-02 12:03:57 +02:00
Geoffrey Oxberry	edf6e9ceac	Add ipopt v3.12.4 package. Add package for the nonlinear programming solver IPOPT. This commit depends on the changes made in GitHub PR #711, since IPOPT requires the headers that correspond to the fake MPI implementation in sequential MUMPS.	2016-04-01 18:37:08 -07:00
Geoffrey Oxberry	71ffe2f1c4	mumps: install mpiseq headers for '~mpi' Prior to this commit, spack installs a library called `libmpiseq` into `spec['mumps'].prefix.lib` when it builds MUMPS without MPI. However, it does not also install the headers corresponding to this library, so it is impossible to compile source files that depend on function calls implemented in this library. This commit fixes this problem by installing these headers, which are needed by packages (e.g., IPOPT) that depend on these headers.	2016-04-01 18:26:25 -07:00
Elizabeth F	e4f7b78e9b	Fixed tk, and used uverridden url_for_version().	2016-04-01 16:38:02 -04:00
Elizabeth F	cfd5e69b81	Added Environment Modules package.	2016-04-01 15:28:03 -04:00
Elizabeth F	d4e6b15d98	Fixed TCL/Tk	2016-04-01 15:25:01 -04:00
Todd Gamblin	f5a77d3958	Merge pull request #709 from xjrc/packages/zoltan Add Package : Zoltan	2016-03-31 15:16:37 -07:00
Joseph Ciurej	09d657e98e	Fixed the MPI variant for the 'zoltan' package.	2016-03-31 14:36:32 -07:00
Joseph Ciurej	b1b94d2b7f	Added the initial version of the 'zoltan' package.	2016-03-31 13:59:49 -07:00
Todd Gamblin	d0c8245a58	Merge pull request #685 from gartung/add-modules-package add modules package and have setup script find it if built	2016-03-31 12:15:11 -07:00
Todd Gamblin	c5f3475f48	Merge pull request #704 from adamjstewart/features/qt-url Add url_for_version function and gtk variant	2016-03-31 11:55:27 -07:00
Todd Gamblin	220c72d67f	Merge branch 'features/blas-lapack-hardening' into develop	2016-03-31 11:37:09 -07:00
Adam J. Stewart	66038ef729	Add url_for_version function and gtk variant	2016-03-31 13:34:56 -05:00
Todd Gamblin	2441068d54	Merge pull request #697 from KineticTheory/pkg-libdrm + libdrm depends_on libpciaccess. Use spack provided libpciaccess.	2016-03-31 09:55:53 -07:00
Todd Gamblin	0840ffa3dd	Merge pull request #698 from UCL-RITS/espresso Fixes install issues on OS/X for Quantum Espresso	2016-03-31 09:47:33 -07:00
Todd Gamblin	e2a7b7e50d	Merge pull request #701 from dhandeo/vtk VTK	2016-03-31 09:46:49 -07:00
Todd Gamblin	a6f6c2b9c5	Merge pull request #702 from adamjstewart/features/cuda Add CUDA and HOOMD-blue packages	2016-03-31 09:45:45 -07:00
Massimiliano Culpo	837eff1704	openssl : special treatment for @external (fixes #647 )	2016-03-31 18:07:44 +02:00
Adam J. Stewart	a0902ad8d8	Change variant defaults and add comment	2016-03-31 11:04:29 -05:00
Dhanannjay Deo	3b0311a1e4	Add variant opengl2, which is ON by default Needed for visit which depends on vtk@6.1.0~opengl2	2016-03-31 10:39:34 -04:00
Dhanannjay Deo	123996aad0	Fix build for vtk6.1.0	2016-03-31 10:39:34 -04:00
Dhanannjay Deo	0bcfd09536	add: VTK lastest versions	2016-03-31 10:39:34 -04:00
Denis Davydov	6d0b4a28ab	oce: fix bugs related to NULL pointers and compiler optimisation	2016-03-31 13:36:28 +02:00
Mayeul d'Avezac	7430f9142f	Can install espresso on OS/X Espresso uses unix utility `find dir -name \*.x` to determine the executable to install. On OS/X, it also finds a bunch of debug symbols associated with the exectuble. These files have the same name, but are in a different directory. So the install process is done by hand in the package.py file, for OS/X.	2016-03-31 10:16:40 +01:00
Mayeul d'Avezac	397e0d1368	Fixes #454 in a simpler way than `34a8f0c` Rather than mess with the environment, have espresso install into the right directory (prefix/bin).	2016-03-31 10:12:20 +01:00
Todd Gamblin	360994b638	Merge branch 'davydden-dealii' into develop - Modified arpack-ng to call libtoolize.	2016-03-30 23:47:21 -07:00
Todd Gamblin	44b8947445	arpack-ng needs an extra libtoolize to build.	2016-03-30 23:33:57 -07:00
Kelly (KT) Thompson	a88c15e101	+ libdrm depends_on libpciaccess. Use spack provided libpciaccess.	2016-03-30 21:18:04 -06:00
Kelly (KT) Thompson	a364ab0d0f	libpng depends on zlib.	2016-03-30 17:12:32 -06:00
Todd Gamblin	ef5c973c93	Merge pull request #688 from davydden/doxygen_fix doxygen: add missing dependencies	2016-03-30 15:54:02 -07:00
Todd Gamblin	35322eccc1	Merge pull request #601 from KineticTheory/pkg-numdiff Provide new package numdiff	2016-03-30 15:22:56 -07:00
Todd Gamblin	892b8f155f	Merge branch 'dealii' of git://github.com/davydden/spack into davydden-dealii	2016-03-30 15:09:29 -07:00
Todd Gamblin	228130ddc8	Merge pull request #693 from mathstuf/osx-ninja ninja: fix installation on OS X	2016-03-30 14:59:08 -07:00
Todd Gamblin	b4580eb04c	Merge pull request #604 from KineticTheory/pkg-graphviz Pkg graphviz	2016-03-30 14:51:15 -07:00
Kelly (KT) Thompson	2ad5d2ea2a	+ For darwin, add a dependency on gettext. This change was recommended in the discussion for PR#601.	2016-03-30 15:40:04 -06:00
Kelly (KT) Thompson	be2862ef4e	Merge remote-tracking branch 'upstream/develop' into pkg-numdiff	2016-03-30 15:35:46 -06:00
Ben Boeckel	f1a0619821	mpich: disable fortran without a fortran compiler	2016-03-30 17:19:29 -04:00
Kelly (KT) Thompson	4ab362ae17	+ Fix variant description.	2016-03-30 14:27:23 -06:00
Kelly (KT) Thompson	d1a3adfcf0	+ Make --disable-perl the default configure option.	2016-03-30 14:25:44 -06:00
Ben Boeckel	dbb25bfeed	ninja: fix installation on OS X The cp -t flag is a GNU-ism. Instead, add a trailing slash to bindir to ensure that it is not treated as a file.	2016-03-30 16:17:52 -04:00
Kelly (KT) Thompson	8da62b310e	Merge remote-tracking branch 'upstream/develop' into pkg-graphviz	2016-03-30 13:59:10 -06:00
Denis Davydov	5506e89aa9	rename variant doxygen to doc	2016-03-30 21:41:23 +02:00
Todd Gamblin	4bc6ace201	Merge pull request #690 from glennpj/py_updates Get py-pandas working plus some python package updates	2016-03-30 12:04:30 -07:00
Todd Gamblin	213e9746ad	Merge pull request #689 from KineticTheory/pkg-subversion Provide subversion (along with apr and apr-util)	2016-03-30 12:02:59 -07:00
Todd Gamblin	a65519def0	Merge pull request #691 from davydden/petsc_remove_qunused petsc: remove no longer needed -Qunused-arguments hack	2016-03-30 12:02:23 -07:00
Todd Gamblin	0ceb7c411b	Merge branch 'davydden-trilinos_extra' into develop	2016-03-30 11:41:43 -07:00
Todd Gamblin	01657e6991	Make suite-sparse use spack compilers.	2016-03-30 11:41:25 -07:00
Denis Davydov	b909da759d	petsc: remove no longer needed -Qunused-arguments hack	2016-03-30 19:26:03 +02:00
Adam J. Stewart	9519f3d988	Fix MPI-CUDA bug	2016-03-30 11:46:58 -05:00
Glenn Johnson	8ae84cfaba	This commit updates pandas and fixes dependencies. Added version 0.18.0. Added 'bin/f2py' to ignore so that activation works. Removed unneccessary dependencies on - libdrm - libpciaccess - llvm - mesa Added recommended dependencies from the pandas project site. http://pandas.pydata.org/pandas-docs/stable/install.html - py-numexpr - py-bottleneck The py-bottleneck is a new package that is also in this branch. Removed optional dependencies - py-scipy - py-matplotlib While those are most likely desired to be in the same python stack as pandas they are not required by pandas.	2016-03-30 11:21:38 -05:00
Glenn Johnson	78be85c84f	Added version 1.11.0.	2016-03-30 11:21:17 -05:00
Glenn Johnson	e7ae983b41	Added version 2.5. Added 'bin/f2py' to ignore so that activation works.	2016-03-30 11:20:27 -05:00
Glenn Johnson	f3b353f5f9	Add 'bin/f2py' to ignore so activation works.	2016-03-30 11:17:24 -05:00
Glenn Johnson	8948cb100b	Add version 1.3.7.	2016-03-30 11:16:35 -05:00
Glenn Johnson	17075736a0	Add version 2.5.2.	2016-03-30 11:16:11 -05:00
Glenn Johnson	42729d9cce	Added version 2016.3.	2016-03-30 11:10:32 -05:00
Glenn Johnson	9153e03e5c	Added version 20.5.	2016-03-30 11:09:47 -05:00
Glenn Johnson	3b19cc303f	Added version 1.10.0.	2016-03-30 11:08:28 -05:00
Glenn Johnson	5c95977dcc	Added version 15.0.1	2016-03-30 11:06:04 -05:00
Glenn Johnson	bc309e42d8	New package, py-bottleneck.	2016-03-30 11:00:18 -05:00
Kelly (KT) Thompson	a7ceacb991	+ Changes to swig are not needed with this PR.	2016-03-30 09:47:31 -06:00
Kelly (KT) Thompson	5b1ef64e31	+ Provide basic instructions for providing subversion w/o additional language bindings.	2016-03-30 09:33:00 -06:00
Kelly (KT) Thompson	f2051f0440	Merge remote-tracking branch 'upstream/develop' into pkg-graphviz	2016-03-30 08:28:53 -06:00
Denis Davydov	2abdd71b41	add dev version and conditionals for tests; remove parmetis	2016-03-30 15:19:29 +02:00
Denis Davydov	9e9f5d01ad	doxygen: add missing dependencies	2016-03-30 13:28:33 +02:00
Denis Davydov	bafc6cebe1	doxygen off by default	2016-03-30 12:00:21 +02:00
Denis Davydov	5b6eefbf04	add variants and extra dependencies	2016-03-30 11:30:35 +02:00
Gregory Lee	c017387214	Merge pull request #672 from citibeth/efischer/160327-GEOSPython3 [WIP] GEOS Python extension did not compile with Python3.	2016-03-29 20:35:00 -07:00
Gregory L. Lee	81b9148b9e	Merge branch 'develop' of https://github.com/llnl/spack into develop	2016-03-29 20:26:22 -07:00
Gregory L. Lee	98bb151d85	updated geos version	2016-03-29 20:25:56 -07:00
Todd Gamblin	e4de235e75	Merge pull request #653 from citibeth/efischer/160325-Cython3Fix Added new Cython version; old versions don't work with Python3.	2016-03-29 17:13:37 -07:00
Todd Gamblin	f42b1dfcbd	Merge branch 'trilinos_extra' of git://github.com/davydden/spack into davydden-trilinos_extra	2016-03-29 17:08:51 -07:00
Kelly (KT) Thompson	c69b9b7b24	Merge remote-tracking branch 'upstream/develop' into pkg-subversion	2016-03-29 17:14:27 -06:00
Kelly (KT) Thompson	a4eff6de3f	+ New version of cmake (3.5.1).	2016-03-29 17:10:49 -06:00
Todd Gamblin	7f469eadff	Merge pull request #684 from davydden/astyle astyle@2.04: add new package	2016-03-29 15:29:14 -07:00
Todd Gamblin	3c8881487f	Merge pull request #632 from sixy6e/gdal-tools Upload of GDAL, kealib, openjpeg, py-tuiview package builds.	2016-03-29 15:28:38 -07:00
Elizabeth Fischer	abee9c83b4	Removed googletest FIXME...	2016-03-29 17:26:34 -04:00
Adam J. Stewart	4ddba5f7ed	Add CUDA and HOOMD-blue packages	2016-03-29 14:47:16 -05:00
Todd Gamblin	a06f682e49	Merge pull request #671 from citibeth/efischer/160327-RemoveRedundantLibXML2 Removed redundant package py-libxml2. Use libxml2 instead.	2016-03-29 12:38:07 -07:00
Patrick Gartung	d96ea5ba00	add modules package and have setup script find it if built	2016-03-29 12:20:11 -05:00
Denis Davydov	ad402ff85b	astyle@2.04: add new package	2016-03-29 18:43:44 +02:00
Todd Gamblin	e0fdb34104	Merge branch 'eschnett-eschnett/boost-mpi-osx' into develop	2016-03-29 05:15:40 -07:00
Todd Gamblin	62ae830e49	Merge branch 'eschnett/boost-mpi-osx' of git://github.com/eschnett/spack into eschnett-eschnett/boost-mpi-osx	2016-03-29 05:14:41 -07:00
Todd Gamblin	b3a384e1d8	Merge pull request #680 from davydden/hypre_muparser_fixes minor fixes to hypre and muparser on Linux	2016-03-29 05:11:50 -07:00
Todd Gamblin	275943d8df	Merge branch 'eschnett-eschnett/gcc-osx-2' into develop	2016-03-29 04:16:53 -07:00
Patrick Gartung	ccc1b23bea	this allows gcc4.9.3 to build on OSX10	2016-03-29 04:15:07 -07:00
Denis Davydov	63c3feb79e	minor fixes to hypre and muparser on Linux	2016-03-29 10:05:08 +02:00
Todd Gamblin	7e7461e8fb	Merge pull request #626 from davydden/mumps_shared_tests add shared variant to mumps (needed for Trilinos) plus tests	2016-03-29 00:33:30 -07:00
Denis Davydov	7753d823cb	add a comment on static mumps	2016-03-29 09:27:55 +02:00
Denis Davydov	f9bcce6a68	turn off python by default	2016-03-29 09:19:24 +02:00
Kelly (KT) Thompson	197f07306b	Merge remote-tracking branch 'upstream/develop' into pkg-subversion	2016-03-28 19:56:07 -06:00
Kelly (KT) Thompson	40cea0110f	Merge remote-tracking branch 'upstream/develop' into pkg-graphviz	2016-03-28 19:53:22 -06:00
Todd Gamblin	02879d94ff	Merge pull request #673 from davydden/netcdf_cxx new package: netcdf-cxx	2016-03-28 18:03:36 -07:00
Denis Davydov	09e77812b6	fix installation of superlu_dist headers and add it as a dependency to petsc; add a variant to hypre to disable internal superlu	2016-03-29 00:21:32 +02:00
Denis Davydov	4e87cf9d74	fix extra comma	2016-03-28 18:00:34 +02:00
Denis Davydov	207215980b	make hypre and hdf5 be ON/OFF	2016-03-28 17:54:27 +02:00
Denis Davydov	dd60cc326c	adopt modifed superlu and hypre	2016-03-28 17:52:22 +02:00
Denis Davydov	5eefca43e7	petsc: extend variants by mumps, complex and debug	2016-03-28 14:35:01 +02:00
Denis Davydov	0da545ecac	tell amesos that we use mumps 5	2016-03-28 13:16:08 +02:00
Denis Davydov	e00cab75bd	more elaborated tests/direct solvers	2016-03-28 12:12:55 +02:00
Denis Davydov	97cdd79478	fix netcdf	2016-03-28 10:49:20 +02:00
Denis Davydov	9c894f5935	new package: netcdf-cxx	2016-03-28 10:19:25 +02:00
Todd Gamblin	8b45d6f84f	Merge pull request #658 from davydden/metis_parmetis_darwin metis/parmetis/oce/boost: correct install_name on Darwin via a global tool	2016-03-27 16:10:05 -07:00
Elizabeth F	3bd550d6a2	GEOS Python extension did not compile with Python3.	2016-03-27 18:28:51 -04:00
Denis Davydov	7eca1284c8	metis/parmetis/boost/oce/scalapack: correct install_name on Darwin via a global function.	2016-03-28 00:22:25 +02:00
citibeth	ccd155572f	Removed redundant package py-libxml2. Use libxml2 instead.	2016-03-27 18:18:54 -04:00
Denis Davydov	fc73e93b50	rework netcdf	2016-03-27 23:47:43 +02:00
Todd Gamblin	9061800b30	Merge branch 'eschnett/gcc-osx-2' of git://github.com/eschnett/spack into eschnett-eschnett/gcc-osx-2	2016-03-27 13:18:23 -07:00
Denis Davydov	20600b8cac	add tests and netcdf-cxx4	2016-03-27 21:03:18 +02:00
Todd Gamblin	66bb71534b	Better blas/lapack and scipy packages: more robust, added `shared` variants. - py-scipy now builds with netlib-lapack, openblas, and atlas. - started a convention for passing lib info from blas/lapack implementations. - Improved netlib-lapack: - Also build static libs when `shared` variant is enabled. - Enable CBLAS build - needed minor patch to build correctly. - Added `shared` variant to OpenBLAS. - Made OpenBLAS build properly shared and static.	2016-03-27 11:32:42 -07:00
Denis Davydov	439d3b3ddb	mumps: add install_name / soname	2016-03-27 17:38:25 +02:00
citibeth	cc42391e0f	Added py-netcdf	2016-03-27 11:06:10 -04:00
Denis Davydov	69ebc8173e	use global tool to fix install_name	2016-03-27 16:04:13 +02:00
Denis Davydov	9cff241ad5	fix install name on Darwin	2016-03-27 10:39:09 +02:00
Denis Davydov	a82a587b32	lower requirement on mumps	2016-03-27 06:17:43 +02:00
citibeth	9b130e1d19	Added googletest package.	2016-03-26 20:42:35 -04:00
Elizabeth F	11ca06b104	Added new py-cython version	2016-03-26 20:37:02 -04:00
Denis Davydov	9c391bbda1	minor changes to variants	2016-03-26 20:52:08 +01:00
Denis Davydov	965ce633c3	cleanup variants	2016-03-26 18:51:59 +01:00
Denis Davydov	f603c82e81	qualify Amesos link errors	2016-03-26 18:43:55 +01:00
Elizabeth F	497adc3b42	Added new version; old versions don't work with Python3.	2016-03-25 22:47:37 -04:00
Denis Davydov	c7011d21aa	update dependencies. Builds fine on OSX	2016-03-25 22:15:39 +01:00
citibeth	358b387283	Merge remote-tracking branch 'upstream/develop' into efischer/160311-StagedPackage	2016-03-25 17:14:35 -04:00
Todd Gamblin	42ec822379	Merge pull request #633 from davydden/netcdf_curl make netcdf link against Spack's curl	2016-03-25 12:54:53 -07:00
Todd Gamblin	8b2e79bcfa	Merge pull request #485 from epfl-scitas/packages/blas_lapack_providers reworking package : netlib	2016-03-25 12:53:46 -07:00
citibeth	8019748396	Merge remote-tracking branch 'upstream/develop' into efischer/160311-StagedPackage # Conflicts: # lib/spack/spack/package.py	2016-03-25 15:36:54 -04:00
Denis Davydov	6699399e51	add when to depends_on scalapack	2016-03-25 17:00:42 +01:00
Denis Davydov	eec50b524b	minor cleanup	2016-03-25 16:58:14 +01:00
Denis Davydov	5172f09b9f	builds on OSX again (modulo CC wrappers are solved)	2016-03-25 16:47:48 +01:00
Denis Davydov	26a72619ae	add missing sys	2016-03-25 12:42:26 +01:00
Denis Davydov	21e81e92a9	try to disable VerifyFortranC tests on Darwin	2016-03-25 12:05:48 +01:00
Denis Davydov	828aeefb1d	minor cleanup	2016-03-25 12:01:00 +01:00
Denis Davydov	7f2db8c267	fix w GCC 4.8 on Ubuntu but broke w GCC 5.3/Clang on OSX	2016-03-25 11:56:41 +01:00
Denis Davydov	d096b155f4	fix filter_file	2016-03-25 11:56:40 +01:00
Denis Davydov	c33a63cabc	fix python installation	2016-03-25 11:56:40 +01:00
Denis Davydov	416fcd0810	same	2016-03-25 11:56:40 +01:00
Denis Davydov	0fc9326a4c	add variants	2016-03-25 11:56:40 +01:00
Denis Davydov	df995c4ef8	minor cleanup	2016-03-25 11:56:40 +01:00
Denis Davydov	8c9f887613	finally builds	2016-03-25 11:56:40 +01:00
Denis Davydov	3f12a51759	keep fiddling	2016-03-25 11:56:40 +01:00
Denis Davydov	e51fe2934e	fiddle more	2016-03-25 11:56:40 +01:00
Denis Davydov	fade526ae4	remove tbb	2016-03-25 11:56:40 +01:00
Denis Davydov	7897f10126	fiddle with fortran	2016-03-25 11:56:40 +01:00
Denis Davydov	eb5b0767aa	remove gfortran as we have libnotfound...	2016-03-25 11:56:40 +01:00
Denis Davydov	2fb599ea86	minor	2016-03-25 11:56:39 +01:00
Denis Davydov	50e4b609c6	minor	2016-03-25 11:56:39 +01:00
Denis Davydov	7e4e2c988a	minor	2016-03-25 11:56:39 +01:00
Denis Davydov	88a7a23132	even more	2016-03-25 11:56:39 +01:00
Denis Davydov	2162627f35	more	2016-03-25 11:56:39 +01:00
Denis Davydov	bc3314a57d	more and more	2016-03-25 11:56:39 +01:00
Denis Davydov	45b4895888	patch	2016-03-25 11:56:39 +01:00
Denis Davydov	b6a35716ce	same	2016-03-25 11:56:39 +01:00
Denis Davydov	b91a155e8d	more specific about dependencies	2016-03-25 11:56:39 +01:00
Denis Davydov	18db930866	rearrange	2016-03-25 11:56:39 +01:00
Denis Davydov	76006fc346	fix typo	2016-03-25 11:56:38 +01:00
Denis Davydov	30ba96e58f	same	2016-03-25 11:56:38 +01:00
Denis Davydov	83fea631f1	extend trilinos	2016-03-25 11:56:38 +01:00
Massimiliano Culpo	f15249afe5	Merge branch 'develop' of https://github.com/LLNL/spack into packages/blas_lapack_providers Conflicts: var/spack/repos/builtin/packages/py-numpy/package.py	2016-03-25 11:05:05 +01:00
Denis Davydov	3e39daeb12	add fPIC to MUMPS when building shared libs	2016-03-25 09:56:24 +01:00
Denis Davydov	fd67da607e	make netcdf link against Spack's curl	2016-03-25 09:32:48 +01:00
Josh Sixsmith	540e57f026	Upload of GDAL, kealib, openjpeg, py-tuiview package builds.	2016-03-25 18:27:02 +11:00
Denis Davydov	fdd7e91ba0	add shared variant to mumps (needed for Trilinos) plus tests	2016-03-25 06:56:46 +01:00
Denis Davydov	03c8a91f6a	parmetis: avoid hardcoding -lm; use same approach as in METIS	2016-03-24 22:33:10 +01:00
Denis Davydov	0d4d201b70	patch parmetis to use external GKlib	2016-03-24 21:24:03 +01:00
Denis Davydov	7fb463abb9	install GKlib headers along with METIS	2016-03-24 21:24:03 +01:00
Todd Gamblin	38ea75e8ca	Merge pull request #490 from epfl-scitas/packages/atlas atlas : provides both 'blas' and 'lapack'	2016-03-24 11:24:04 -07:00
Todd Gamblin	823edd0bb2	Merge pull request #627 from adamjstewart/features/numpy-scipy Simplify NumPy dependencies	2016-03-24 11:05:09 -07:00
Alfredo Gimenez	254f65f299	Remove incorrect sanity check for libelf	2016-03-24 10:48:38 -07:00
Adam J. Stewart	8643e21913	Simplified NumPy dependencies	2016-03-24 12:34:58 -05:00
alalazo	758a9c9096	python extensions : create PYTHONPATH in module files	2016-03-24 10:57:46 +01:00
Todd Gamblin	7cf1b7ed51	Merge pull request #613 from davydden/superlu_dist_fix_lib fix superlu-dist lib installation	2016-03-24 02:54:43 -07:00
Todd Gamblin	1306cdd998	Merge pull request #618 from epfl-scitas/fixes/espresso_no_module fix : no module file gets generated by espresso	2016-03-24 02:53:56 -07:00
Todd Gamblin	4be8472f61	Merge pull request #612 from davydden/mumps_osx fix MUMPS build on OSX (set parallel=False)	2016-03-24 02:53:29 -07:00
Todd Gamblin	e1848c1d28	Merge pull request #624 from davydden/parmetis_gnu fix parmetis on Ubuntu with GNU compilers by linking to lm	2016-03-24 02:44:40 -07:00
Todd Gamblin	c83d22b5fc	Merge pull request #587 from cyrush/cmake_pkg_openssl_as_variant cmake package: add variant for openssl support	2016-03-24 02:42:39 -07:00
Denis Davydov	9b8b17b6f1	fix parmetis on Ubuntu with GNU compilers by linking to lm	2016-03-24 10:36:02 +01:00
Denis Davydov	4e5dfc8b18	fix missing (depricated) _dggsvd_ and _sggsvd_ in Openblas 0.2.16	2016-03-23 22:09:39 +01:00
alalazo	acaa589bdd	Merge branch 'develop' of https://github.com/LLNL/spack into packages/blas_lapack_providers Conflicts: var/spack/repos/builtin/packages/netlib-lapack/package.py	2016-03-23 17:25:00 +01:00
alalazo	34a8f0c96b	espresso : fixes #454	2016-03-23 17:01:52 +01:00
Todd Gamblin	cc582dd4b4	Add mock python package.	2016-03-23 02:03:27 -07:00
Todd Gamblin	091fcc3aa9	Merge pull request #599 from davydden/slepc add Slepc package	2016-03-23 01:53:32 -07:00
Todd Gamblin	a4f5084589	Merge pull request #609 from xjrc/packages/silo Update Package : Silo	2016-03-23 01:52:56 -07:00
Todd Gamblin	71c976d212	Merge pull request #611 from davydden/p4est add p4est package	2016-03-23 01:52:38 -07:00
Denis Davydov	01918a6f48	fix MUMPS build on OSX (set parallel=False)	2016-03-23 09:29:24 +01:00
Todd Gamblin	c4134ee71e	Fix #608 : broken numpy build. - Failed to catch all instances of modify_module when it was renamed to setup_dependent_package. - Refactored remaining modify_module calls. - Also modified Python's setup_dependent_package slightly: only creates empty site-packages directory for Python extensions now, not for all dependents.	2016-03-23 00:36:32 -07:00
Denis Davydov	5b3c96a9bb	fix superlu-dist lib installation	2016-03-23 08:07:45 +01:00
Joseph Ciurej	474db2085e	Simplified the 'url_for_version' function for the 'Crypto++' package.	2016-03-22 15:55:54 -07:00
Gregory Becker	7c729d4c3c	Merged newarch into merge	2016-03-22 15:22:51 -07:00
Denis Davydov	0ee993569f	add deal.ii package	2016-03-22 23:04:59 +01:00
Denis Davydov	6c8d51f403	add p4est package	2016-03-22 22:58:14 +01:00
Denis Davydov	24264eb00e	add slepc package	2016-03-22 22:44:10 +01:00
Denis Davydov	27f337aa11	petsc: set PETSC_DIR in dependent_env	2016-03-22 22:12:01 +01:00
Todd Gamblin	2d69f386d0	Merge pull request #600 from davydden/arpack_mpi_fix arpack: fix for +mpi variant	2016-03-22 13:05:55 -07:00
Todd Gamblin	4a15477783	Merge pull request #605 from davydden/hypre_osx temporary fix Hypre for OSX by building static lib by default	2016-03-22 12:42:14 -07:00
Todd Gamblin	8823a5ac1c	Merge pull request #602 from davydden/oce add OCE package	2016-03-22 12:41:14 -07:00
Todd Gamblin	cb2e6c9d02	Merge pull request #603 from davydden/tbb add Intel TBB package	2016-03-22 12:40:49 -07:00
Todd Gamblin	4f44431900	Merge pull request #606 from davydden/gettext add gettext package	2016-03-22 12:38:34 -07:00
Joseph Ciurej	1728a0c3e6	Updated the 'crypto++' package to use an improved URL formation scheme (inspired by changes made to the 'Silo' package).	2016-03-22 12:33:11 -07:00
Joseph Ciurej	d05e4581c9	Added the '+silex' variant to the Silo package. Added a number of different versions to the Silo package.	2016-03-22 12:31:26 -07:00
Denis Davydov	fd1784369a	add muparser package	2016-03-22 19:50:15 +01:00
Denis Davydov	5f68e14d3b	add gettext package	2016-03-22 19:41:31 +01:00
Cyrus Harrison	e56f5c4d6b	add Intel TBB package	2016-03-22 19:21:34 +01:00
Erik Schnetter	7618dc504c	temporary fix Hypre for OSX by building static lib by default	2016-03-22 19:18:04 +01:00
Kelly (KT) Thompson	1f8d79b69a	+ Provide a ~perl variant to support building on systems w/o the perl-devel package installed.	2016-03-22 09:33:49 -06:00
Denis Davydov	d25026b749	add OCE package	2016-03-22 16:26:16 +01:00
Kelly (KT) Thompson	3214cd0d56	Merge remote-tracking branch 'upstream/develop' into pkg-graphviz	2016-03-22 09:24:31 -06:00
Denis Davydov	6eb97a30a3	arpack: fix for +mpi variant	2016-03-22 14:24:27 +01:00
Todd Gamblin	e32eb7e990	Merge pull request #585 from davydden/mumps_w_parmetis fix mumps: when installed with parmetis has to be linked with metis	2016-03-22 02:44:04 -07:00
Todd Gamblin	f323f54704	Merge pull request #591 from epfl-scitas/package/llvm llvm : added version 3.8.0	2016-03-22 02:22:39 -07:00
Todd Gamblin	1a3bdf03c3	Merge pull request #598 from davydden/suite_sparse_rename Suite sparse rename	2016-03-22 02:15:08 -07:00
Todd Gamblin	eed0ccad73	Merge pull request #597 from davydden/arpack arpack: add a patch for 3.3	2016-03-22 02:10:14 -07:00
Todd Gamblin	a5a4cce7f1	Merge pull request #582 from KineticTheory/develop + Provide fpic variant for netlib-lapack.	2016-03-22 02:05:43 -07:00
Todd Gamblin	a26992ef55	Change from PR #552 : rename setup_dependent_python_module -> setup_dependent_package - Fixed in package.py - Fixed wrong prototypes in packages that use it. - Fixed build_environment to set module variables properly - added hacky fix to ensure spec/package consistency in build processes. - Need to think about defensive spec copy done by `Repo.get`. May be time to think about an immutable spec implementation.	2016-03-22 01:56:16 -07:00
Denis Davydov	cb97e8dd93	adjust eigen and octave to use new names of suite sparse	2016-03-22 09:43:37 +01:00
Denis Davydov	3c5a1605d5	adjust the class name for suite sparse	2016-03-22 09:27:39 +01:00
Denis Davydov	aca8b5c89d	move suite sparse to a proper folder	2016-03-22 09:27:00 +01:00
Denis Davydov	23bf70296e	arpack: add a patch for 3.3	2016-03-22 09:24:15 +01:00
Todd Gamblin	3f32dd767e	Merge pull request #589 from davydden/petsc_osx fix petsc on osx	2016-03-22 00:33:34 -07:00
Kelly (KT) Thompson	7ec450912d	+ Provide subversion and required packages apr and apr-util. + Installation of subversion may need to be modified to include python and perl bindings. I have provided comments to this end, but the code is not active.	2016-03-21 21:14:03 -06:00
Kelly (KT) Thompson	039efd55d5	Merge remote-tracking branch 'upstream/develop' into pkg-graphviz	2016-03-21 20:43:22 -06:00
Kelly (KT) Thompson	8bf8617876	Merge remote-tracking branch 'upstream/develop' into pkg-numdiff	2016-03-21 20:42:21 -06:00
Kelly (KT) Thompson	4b46e21685	+ Provide package numdiff.	2016-03-21 19:55:54 -06:00
Todd Gamblin	b1516f64eb	Rename some environment methods to be less repetitive, add set_path.	2016-03-21 16:01:40 -07:00
Todd Gamblin	439d47b4e4	Refactor environment setup. - Gave setup_environment and setup_dependent_environment more similar signatures. They now allows editing the Spack env and the runtime env for this package and dependents, respectively. - modify_module renamed to setup_dependent_python_module for symmetry with setup_dependent_environment and to avoid confusion with environment modules. - removed need for patching Package objects at runtime. - adjust packages to reflect these changes.	2016-03-21 16:01:35 -07:00
Todd Gamblin	861a235ecb	Merge pull request #552 from epfl-scitas/features/env_objects_flying_around enhancement proposal : customization of module files	2016-03-21 15:56:20 -07:00
Kelly (KT) Thompson	799f1f6768	Merge remote-tracking branch 'upstream/develop' into pkg-graphviz	2016-03-21 16:24:17 -06:00
Todd Gamblin	624e56db6a	Merge pull request #592 from mathstuf/paraview-python Paraview python	2016-03-21 14:59:41 -07:00
Denis Davydov	953fb35f82	add superlu_dist package	2016-03-21 18:00:32 +01:00
Ben Boeckel	553fff270a	paraview: disallow python3 ParaView is not Python3-ready.	2016-03-21 11:55:09 -04:00
Ben Boeckel	8e77f17760	paraview: fix variant description typo	2016-03-21 11:55:09 -04:00
Ben Boeckel	c5c92d50eb	paraview: remove trailing whitespace	2016-03-21 11:24:36 -04:00
alalazo	efef229b85	Merge branch 'develop' of https://github.com/LLNL/spack into package/llvm	2016-03-21 16:22:34 +01:00
alalazo	7569204a53	llvm : does not support python 3	2016-03-21 16:18:02 +01:00
Denis Davydov	3a3443dff6	parmetis patches by PETSc developers	2016-03-21 15:14:48 +01:00
alalazo	3fcaf5b903	llvm : update to 3.8.0	2016-03-21 14:47:05 +01:00
Denis Davydov	b926d8a0cd	build parmetis against external metis	2016-03-21 14:33:00 +01:00
alalazo	fbeffee91e	Merge branch 'develop' of https://github.com/LLNL/spack into features/env_objects_flying_around Conflicts: lib/spack/spack/package.py var/spack/repos/builtin/packages/netlib-scalapack/package.py	2016-03-21 09:46:49 +01:00
Denis Davydov	7b283bfaff	fix petsc on osx	2016-03-21 07:50:10 +01:00
Cyrus Harrison	bba66cbe28	cmake: depend on openssl when openssl variant=true	2016-03-20 19:27:22 -07:00
Cyrus Harrison	d493658a58	cmake package: add variant for openssl support The openssl variant defaults to true to preserve spack's current CMake configuration, which is using OpenSSL. Signed-off-by: Cyrus Harrison <cyrush@llnl.gov>	2016-03-20 15:32:54 -07:00
Todd Gamblin	c0f0350634	Merge pull request #583 from davydden/openblas_osx fix openblas suffix for OS-X	2016-03-20 03:37:30 -07:00
Denis Davydov	db61a09cf1	fix mumps: when installed with parmetis has to be linked with metis	2016-03-20 09:47:15 +01:00
Denis Davydov	95ad2875b6	fix scalapack suffix for osx	2016-03-20 09:27:07 +01:00
Denis Davydov	620c120503	fix openblas suffix for OS-X	2016-03-20 09:26:11 +01:00
Kelly (KT) Thompson	ed0b5e649d	+ Provide fpic variant for netlib-lapack.	2016-03-19 20:45:35 -06:00
alalazo	5f6f2d5f51	Revert "openssl : solved glitch to prevent spack to freeze when the network is unreachable" This reverts commit `4cf4bf3a03`.	2016-03-18 14:42:24 +01:00
alalazo	ec8cc2b528	PYTHONPATH : python patches methods for its extensions	2016-03-18 14:40:53 +01:00
alalazo	82ba0c6c07	Merge branch 'bugfix/openssl' into features/env_objects_flying_around	2016-03-18 11:08:55 +01:00
Erik Schnetter	3b24db92b5	Update PAPI to 5.4.3	2016-03-18 11:08:16 +01:00
alalazo	4cf4bf3a03	openssl : solved glitch to prevent spack to freeze when the network is unreachable	2016-03-18 11:05:59 +01:00
alalazo	f9438c75d0	Merge branch 'develop' of https://github.com/LLNL/spack into features/env_objects_flying_around	2016-03-18 10:26:34 +01:00
Todd Gamblin	179ed7cce6	Merge pull request #566 from eschnett/eschnett/papi Update PAPI to 5.4.3	2016-03-17 18:52:44 -07:00
Todd Gamblin	1689131043	Merge pull request #567 from eschnett/eschnett/openblas Update OpenBLAS to 0.2.16	2016-03-17 18:52:32 -07:00
Todd Gamblin	a88c02854a	Merge pull request #565 from eschnett/eschnett/curl Update curl to 7.47.1	2016-03-17 18:52:02 -07:00
Erik Schnetter	1b279cd7ff	Update OpenBLAS to 0.2.16	2016-03-17 21:51:26 -04:00
Erik Schnetter	802acb4d16	Update PAPI to 5.4.3	2016-03-17 21:50:21 -04:00
Todd Gamblin	90268876f7	Change sanity_check_[file\|dir] to sanity_check_is_[file\|dir], per #554 - Add documentation as well.	2016-03-17 18:49:58 -07:00
Erik Schnetter	9e4c757f50	Update curl to 7.47.1	2016-03-17 21:49:36 -04:00
alalazo	e558809043	python : fixed typo	2016-03-17 19:32:31 +01:00
alalazo	ac394718ec	python : implemented possible solution	2016-03-17 18:22:07 +01:00
alalazo	f0f0663d1b	package : split `environment_modifications` into `setup_environment` and `setup_dependent_environment`. package : renamed `module_modifications` to `modify_module` for consistency	2016-03-17 15:11:39 +01:00
Kelly (KT) Thompson	f07d4c9439	+ Provide ~perl and ~shared variants.	2016-03-16 21:30:41 -06:00
citibeth	fa2a66db67	1. Disabled git versions known to have vulnerabilities. 2. Added autoconf command to allow building directly from GitHub source.	2016-03-16 15:46:59 -04:00
Todd Gamblin	905549ea2d	Merge pull request #555 from epfl-scitas/packages/binutils Adding latest version in binutils	2016-03-16 08:39:13 -07:00
alalazo	597727f8be	tclmodules : added hooks to process EnvironmentModifications objects	2016-03-16 15:19:13 +01:00
Nicolas Richart	9c29966674	Change urls in binutils to help 'spack checksum/versions' + adding latest version	2016-03-16 12:57:17 +01:00
alalazo	b45ec3f04e	environment : simplified modification of the environment	2016-03-16 10:55:28 +01:00
alalazo	b2c98feea4	Merge branch 'develop' of https://github.com/LLNL/spack into features/env_objects_flying_around	2016-03-16 09:02:35 +01:00
Todd Gamblin	68d22253ec	Add sanity checks to the libelf build.	2016-03-15 17:22:48 -07:00
Matthew LeGendre	108ea1522a	Merge pull request #549 from LLNL/bugfix/gh538-less-greedy-concretize Bugfix/gh538 less greedy concretize	2016-03-15 16:18:54 -07:00
Todd Gamblin	cdd2ea3067	Merge pull request #537 from adamjstewart/features/octave Add GNU Octave package	2016-03-15 11:23:40 -07:00
alalazo	572cb93bf8	package : renamed `setup_dependent_environment` to `module_modifications`	2016-03-15 14:05:30 +01:00
alalazo	c85888eb57	package : added `environment_modifications`	2016-03-15 13:36:41 +01:00
alalazo	bcea1df01c	environment : refactoreded set_build_environment_variables	2016-03-15 10:49:33 +01:00
Adam J. Stewart	0d9a6d3c25	Updates to qrupdate	2016-03-14 14:19:30 -05:00
Todd Gamblin	f45b8b1083	Add some tests for packages with multiple virtual dependencies. - Added mock `hypre` package, depends on `lapack` and `blas`. - test cases where some packages provide both `lapack` and `blas`, but others do not.	2016-03-14 05:02:50 -07:00
Erik Schnetter	8b715d9c3f	Update tmux	2016-03-13 21:31:48 -04:00
citibeth	003957a689	Reverted bad change	2016-03-13 00:33:13 -05:00
Elizabeth F	c1a8574d8f	Fixed for Python 2.6	2016-03-13 00:29:40 -05:00
Elizabeth F	90bb855ffa	A new subclass StagedPackage(Package) is introduced. This PR should not change the behavior for existing packages that subclass from spack.Package. If a package subclasses spack.StagedPackage instead of spack.Package, the install() phase (run inside a forked process) is now separated into sub-stages: a) spconfig: Generate a script spconfig.py that will configure the package (eg by running CMake or ./configure) This is for use if the user wishes to build externally from Spack. Therefore, the Spack compiler wrappers are NOT used here. Currently, that means that RPATH support is up to the user. b) configure: Configure the project (eg: runs configure, CMake, etc). This will configure it for use within Spack, using the Spack wrapper. c) build: eg: "make" d) install: eg: "install" If one chooses to use StagedPackage instead of Package, then one must implement each of the install sub-stages as a separate method. StagedPackage.install() then calls each of the sub-stages as appropriate. StagedPackage can be configured to only run certain sub-stages. This is done by setting the optional kwarg install_phases when calling do_install(). Setting install_phases() ONLY has an effect on StagedPackage, not on any existing packages. By default, install_phases is set to make StagedPackage run the same stages that are normally run for any package: configure, build, install (and NOT spconfig). The ability for Spack to run stages selectively for StagedPackage instances will enable new functionality. For example, explicit CMake/Autotools helpers that allow Spack to help configure a user's project without fetching, building or installing it. ------------- One implementation of StagedPackage is provided, CMakePackage. This has the following advantage for CMake-based projects over using the standard Package class: a) By separating out the phases, it enables future new functionality for packages that use it. b) It provides an implementation of intall_spconfig(), which will help users configure their CMake-based projects. CMakePackage expects users to implement configure_args() and configure_env(). These methods provide the package-specific arguments and environment needed to properly configure the package. They are placed in separated functions because they are used in both the spconfig and configure stages. TODO: 1. Generate spconfig.py scripts that are more readable. This allows the users to understand how their project is configured. 2. Provide a practical way for the user to ACCESS the spconfig stage without building the project through Spack. 3. The CMAKE_TRANSITIVE_INCLUDE_PATH stuff needs to be reworked; it should be considered provisional for now. 4. User of Autotools might wish to make a similar ConfigurePackage subclass of StagedPackage. --------------- One package using CMakePackage is introduced. See ibmisc/package.py.	2016-03-11 23:30:38 -05:00
Elizabeth F	7cd478418d	New version of LAPACK	2016-03-11 23:28:36 -05:00
Elizabeth F	90f2e40ff9	Added comment to Emacs.	2016-03-11 23:28:16 -05:00
Adam J. Stewart	145390c7f3	Add gl2ps and qrupdate packages	2016-03-11 16:57:37 -06:00
Todd Gamblin	081bdd0828	Merge pull request #528 from citibeth/efischer/160309-Emacs Added Emacs package	2016-03-11 13:31:58 -08:00
Adam J. Stewart	6ec65cd4ca	Add GNU Octave package	2016-03-11 15:03:37 -06:00
Todd Gamblin	4574f768ef	Merge pull request #526 from KineticTheory/develop Provide instructions for cmake/3.5.0 (plus 2 new variants) and qt/5.4.2	2016-03-11 09:20:47 -08:00
Kelly (KT) Thompson	f5e8857c5e	+ Rename variant 'sphinxbuild' to 'doc' as recommended in the discussion of PR#526. Also, remove a debug print statement that was accidentally committed.	2016-03-11 09:51:12 -07:00
Kelly (KT) Thompson	280384fce3	Merge remote-tracking branch 'upstream/develop' into develop	2016-03-10 09:09:16 -07:00
Todd Gamblin	b637f75164	Merge branch 'mplegendre-features/external-packages' into develop	2016-03-10 02:04:44 -08:00
alalazo	4f14db8af2	netlib-lapack : optional dependency on external blas	2016-03-10 10:34:51 +01:00
Todd Gamblin	1fe196f95c	whitespace and formatting	2016-03-10 01:29:55 -08:00
Todd Gamblin	ad6625456e	Merge pull request #513 from alfredo-gimenez/develop Variants and fixes to thrift package	2016-03-10 00:59:15 -08:00
Elizabeth F	b701aa10d4	Fixed up	2016-03-09 21:21:25 -05:00
Elizabeth F	267e83d8a7	Added emacs package.	2016-03-09 21:16:50 -05:00
Todd Gamblin	bf1639e044	Merge pull request #522 from epfl-scitas/bugfix/mpfr change of url for mpfr	2016-03-09 17:17:23 -08:00
Kelly (KT) Thompson	23cbc2b1d9	+ Provide download/build instructions for qt/5.4.2. - This version provides updates to provided cmake scripts that are required for building cmake-gui. + Provide download/build instructions for version 3.5.0. - When building the +qt variant, add a validate function to ensure that qt-5.4.0 is not used (this version of qt has errors related to cmake).	2016-03-09 17:59:39 -07:00
Nicolas Richart	6e82ab1f15	change of url for mpfr	2016-03-09 21:18:44 +01:00
Todd Gamblin	b93a2ba1cf	Merge pull request #520 from LLNL/bugfix/remove-hdf5-unsupported-variant Removing `unsupported` variant from HDF5.	2016-03-09 11:39:06 -08:00
Kelly (KT) Thompson	113e942c3c	Merge remote-tracking branch 'upstream/develop' into develop.	2016-03-09 12:38:48 -07:00
Todd Gamblin	45ef496dd5	Add some descriptive language to a list comprehension.	2016-03-09 11:26:37 -08:00
Alfredo Adolfo Gimenez	383e73a5f5	Remove unneccessary depends_on	2016-03-09 11:25:51 -08:00
Todd Gamblin	d06ebf23d4	Removing `unsupported` variant from HDF5. - `unsupported` shouldn't be a variant.	2016-03-09 11:16:35 -08:00
Matthew LeGendre	87db69478d	Merge branch 'develop' into features/external-packages Conflicts: lib/spack/spack/package.py	2016-03-09 11:09:37 -08:00
Todd Gamblin	b43c277dc6	Merge @citibeth and @alalazo's petsc fixes from #515 and #517	2016-03-09 10:55:50 -08:00
Todd Gamblin	ad7d89b165	Merge branch 'efischer/160309-HypreFix' of git://github.com/citibeth/spack into citibeth-efischer/160309-HypreFix	2016-03-09 10:54:08 -08:00
Todd Gamblin	8ac1752743	Merge pull request #501 from adamjstewart/patches/m4 Add patch to allow PGI to build M4	2016-03-09 10:29:48 -08:00
Adam J. Stewart	8e76cda200	Patch config.hin, not extern-inline.m4	2016-03-09 10:41:31 -06:00
alalazo	f01d1c4385	petsc : added variants and logic to build various flavors	2016-03-09 14:36:37 +01:00
Elizabeth F	c67b922185	Added shared library capability.	2016-03-09 00:34:08 -05:00
Elizabeth F	5b22873b3d	Fixed issues with hypre: 1. --with-lapack-lib was wrong. 2. --with-MPI was wrong; set env vars for MPI wrappers instead. 3. Added version 2.10.1 4. Added shared library variant (True by default). Hypre can build shared or static libraries, but not both in the same build.	2016-03-09 00:27:25 -05:00
Alfredo Gimenez	0c7d0c0b6c	Variants and fixes to thrift package	2016-03-08 12:26:40 -08:00
Adam J. Stewart	e0e545774a	Add more versions to Autotools	2016-03-08 12:15:40 -06:00
Todd Gamblin	18ce5ccf8f	Avoid race in pango's `make install`, set parallel=False	2016-03-08 02:49:11 -08:00
Adam J. Stewart	b7750cf61c	Autoreconf is necessary after patch	2016-03-07 15:52:22 -06:00
Adam J. Stewart	1e7d946d91	Add patch to allow PGI to build M4	2016-03-07 12:37:51 -06:00
Todd Gamblin	96e1b2d25c	Merge pull request #486 from RemoteConnectionManager/paraview_fix Paraview new version	2016-03-07 02:48:12 -08:00
Todd Gamblin	bff7107f56	Merge pull request #491 from citibeth/efischer/160229-NewPackages-2 (2) New packages added: blitz, netcdf-cxx4, netcdf-fortran, proj, udunits2	2016-03-07 02:45:37 -08:00
Erik Schnetter	a399451e1e	Update OpenSSL to 1.0.2g	2016-03-06 23:34:48 -05:00
citibeth	ae87948a23	Fixed URLs Removed vestigal mpi variant in netcdf-fortran	2016-03-05 23:05:45 -05:00
Todd Gamblin	c59546fae0	Merge branch 'adamjstewart-features/libsigsegv' into develop	2016-03-05 15:15:08 -08:00
Todd Gamblin	7d847f4dc4	Minor tweaks to m4 -- be sure to add sigsegv args explicitly.	2016-03-05 15:14:21 -08:00
Todd Gamblin	07255da6e9	Merge branch 'features/libsigsegv' of https://github.com/adamjstewart/spack into adamjstewart-features/libsigsegv	2016-03-05 15:06:49 -08:00
Adam J. Stewart	220b6a9fee	Make libsigsegv an optional dependency	2016-03-05 16:46:32 -06:00
Todd Gamblin	24f0757d82	Merge pull request #343 from adamjstewart/features/mpc Add different URL for older source code	2016-03-05 14:37:43 -08:00
Todd Gamblin	3dd630d0a5	Make openssl a variant in libevent.	2016-03-05 14:33:23 -08:00
Todd Gamblin	0b864aacdc	Merge branch 'eschnett/libevent' of https://github.com/eschnett/spack into eschnett-eschnett/libevent	2016-03-05 14:23:06 -08:00
Todd Gamblin	ac67f3b53e	Merge pull request #487 from spakin/llvm-3.7.1 Added LLVM 3.7.1 support	2016-03-05 14:19:31 -08:00
Todd Gamblin	a9d7135c19	Merge pull request #495 from alfredo-gimenez/develop Fixed unmatched function signature for do_fetch in jdk package	2016-03-05 14:16:09 -08:00
Mark Miller	f663d37da7	Adding zfp package.	2016-03-04 17:08:11 -08:00
Alfredo Gimenez	f90eaa5f46	Fixed unmatched function signature for do_fetch in jdk package	2016-03-04 14:53:08 -08:00
Adam J. Stewart	a7b918837e	GNU m4 depends on libsigsegv	2016-03-04 15:22:28 -06:00
Elizabeth Fischer	648d08eb30	Update package.py Updated homepage URL to general NetCDF homepage.	2016-03-04 12:05:43 -05:00
Elizabeth Fischer	b043c4a5b8	Update package.py Removed comments on configure options.	2016-03-04 12:04:41 -05:00
Elizabeth F	0eb6ef2cd0	1. Removed fake MPI dependency from netcdf-cxx4 and netcdf-fortran. 2. Removed Fortran bootstrap variant from netcdf. Users who need NetCDF Fortran interface should install netcdf-fortran. 3. Added result of ./configure --help on the netcdf-fortran. Verified the package has no additional options that should be exposed through Spack.	2016-03-04 11:14:52 -05:00
alalazo	a2af4940aa	atlas : disabling parallel builds	2016-03-04 09:59:16 +01:00
alalazo	310099d888	atlas : provides blas and lapack	2016-03-04 09:32:01 +01:00
Scott Pakin	7183db1b7d	Added LLVM 3.7.1 support	2016-03-03 11:30:57 -07:00
alalazo	63ae407169	netlib-lapack : unified build with netlib-blas openssl : updated version py-numpy : updated dependencies	2016-03-03 16:39:21 +01:00
Luigi Calori	f5cc63156c	Merge branch 'develop' of https://github.com/RemoteConnectionManager/spack into paraview_fix merge upstream develop	2016-03-03 12:43:38 +01:00
citibeth	976d0240c4	Removed FIXMEs.	2016-03-02 18:58:47 -05:00
Gregory Becker	6e7b00a0f6	Made module handling much saner and safer	2016-03-02 15:54:23 -08:00
Gregory Becker	676591ffc0	fixed a bug and a test bug	2016-03-02 14:17:46 -08:00
Gregory Becker	25f20b1967	bug hunting	2016-03-02 11:40:21 -08:00
Todd Gamblin	8421dcb762	Merge pull request #452 from epfl-scitas/llvm/cleanup Cleaned package : llvm	2016-03-02 01:32:08 -08:00
Todd Gamblin	9c565b155a	Merge pull request #462 from xjrc/packages/silo Update Package : Silo	2016-03-02 01:31:10 -08:00
Kelly (KT) Thompson	8174489787	+ Provide two new variants for cmake: 1) +qt - build the cmake-gui Qt application. - adds a dependency on Qt. 2) +sphinxbuild - build the html CMake documentation. - adds a dependency on python and py-sphinx	2016-03-01 15:25:57 -07:00
citibeth	eb1d90a8cf	Undid accidental change on this branch.	2016-02-29 23:31:54 -05:00
Elizabeth F	15ae92aae9	New packages added: blitz, netcdf-cxx4, netcdf-fortran, proj, udunits2	2016-02-29 23:21:44 -05:00
Elizabeth F	e414c5fdfb	Added missing cmake dependencies	2016-02-29 23:21:08 -05:00
Ian Lee	67f327f805	Updated links to use new llnl.gov address	2016-02-28 19:47:19 -08:00
Luigi Calori	8f3ac9ac8b	adding new version to praview, compiled with spack -d install -j 8 --keep-stage paraview@5.0.0+qt+python+tcl+opengl2%gcc@4.8.2 ^netcdf -mpi	2016-02-27 01:40:32 +01:00
Joseph Ciurej	30d9ca2bde	Updated the silo package and added the '+fortran' variant.	2016-02-26 16:06:17 -08:00
Erik Schnetter	20845a739f	Libevent depends on OpenSSL	2016-02-24 22:18:51 -05:00
alalazo	976ae91dcc	llvm : removed duplicate version	2016-02-24 14:11:57 +01:00
Todd Gamblin	0d23ff92b0	Merge pull request #446 from LLNL/bugfix/python_config_compiler modify compiler commands in python config files, fix for #431	2016-02-24 10:52:06 +09:00
Todd Gamblin	87610a5102	Merge pull request #448 from epfl-scitas/packages/gromacs Added package : gromacs	2016-02-24 10:49:06 +09:00
Tom Scogland	5c8dd6c3c8	llvm trunk version Adding a trunk version to the llvm package. This has all the features and requirements of the others, with the additional caveat that the llvm project makes no guarantee that trunk on all repositories together will necessarily make a working compiler. It has been tested, and worked with a version today, but not yesterday, so if you test keep that in mind.	2016-02-20 17:23:55 -08:00
Todd Gamblin	97c3854c40	Merge pull request #422 from epfl-scitas/packages/openssl_url openssl : url computation	2016-02-19 16:28:02 -08:00
alalazo	30c3047482	gromacs : added package	2016-02-19 12:39:38 +01:00
Todd Gamblin	3c1aa9a4ad	Merge pull request #298 from epfl-scitas/refactoring/resource_directive refactoring proposal : composite for Stage and FetchStrategy	2016-02-18 23:13:12 -08:00
Gregory L. Lee	19d10291bf	modify compiler commands in python config files, fix for #431	2016-02-18 15:45:29 -08:00
Mario Melara	3558404c03	Check difference by using arch tuple rather than .target	2016-02-17 14:54:39 -08:00
Mario Melara	0a6b54a8c4	Added module compilers so that no CompilerSpecError is thrown	2016-02-17 14:53:56 -08:00
Joseph Ciurej	6cd76d69c3	Fixed the "+shared" variant in the "hdf5" package.	2016-02-17 11:51:24 -08:00
Joseph Ciurej	0388093f7a	Changed the hdf5 "+static" variant to become the "+shared" variant.	2016-02-16 17:33:19 -08:00
Joseph Ciurej	fca7ef2f7b	Moved "Triangle" to "triangle" to be more in line with Spack package naming conventions.	2016-02-16 17:23:37 -08:00
Joseph Ciurej	8cab10214e	Added the installation files for the "ExodusII" package. Added the "+static" variant to "hdf5" to enable "ExodusII" support.	2016-02-16 16:43:24 -08:00
Joseph Ciurej	09254014b1	Added the installation files for the "TetGen" package.	2016-02-16 13:24:01 -08:00
Joseph Ciurej	3c8bbeafc7	Added the installation files for the "Triangle" package.	2016-02-16 13:01:18 -08:00
Joseph Ciurej	9a6221ea40	Added the installation files for the "ndiff" package.	2016-02-16 12:47:14 -08:00
Joseph Ciurej	db50f52bbc	Adding the "Crypto++" package installation files.	2016-02-16 11:40:00 -08:00
Todd Gamblin	9e4671a4b4	Merge pull request #340 from adamjstewart/features/xz Remove unnecessary URLs	2016-02-16 10:24:42 -08:00
Adam J. Stewart	bf162e60f1	Add latest version	2016-02-15 10:53:50 -06:00
Todd Gamblin	d8c0edcc81	Minor code cleanup for gcc.	2016-02-14 14:40:25 -08:00
Todd Gamblin	63911d4165	Merge pull request #354 from eschnett/eschnett/libedit libedit depends on ncurses	2016-02-12 10:33:08 -08:00
Erik Schnetter	8e33cc1ae1	Properly wrap all long lines	2016-02-12 13:11:45 -05:00
Erik Schnetter	77c17e1d92	Since my last patch didn't get traction, here is a new approach to building gcc on Darwin: - Add a variant specifying whether to build with binutils, defaulting to true - Auto-detect whether this is Darwin; if so, set binutils and gold defaults to false, as they don't work on Darwin - Disable Go, which doesn't build on Darwin - Clean up handling configure options	2016-02-12 12:52:47 -05:00
alalazo	247a4bc751	mpich : added back MPI_F90	2016-02-12 12:15:09 +01:00
Massimiliano Culpo	70985170e5	qe : compiled on rhle6	2016-02-12 12:08:31 +01:00
Erik Schnetter	d7f674ce96	libedit depends on ncurses	2016-02-11 14:53:20 -05:00
alalazo	e8704433de	espresso : added directories to search path	2016-02-11 18:57:40 +01:00
alalazo	b272a8881b	espresso : fixed dependency handling	2016-02-11 18:18:05 +01:00
alalazo	ca3cdb4458	espresso : current working tree	2016-02-11 17:45:09 +01:00
alalazo	157ec210a7	espresso : synchronized with current develop	2016-02-11 13:05:31 +01:00
alalazo	e7454132a2	Merge branch 'develop' of https://github.com/LLNL/spack into packages/espresso	2016-02-11 13:03:47 +01:00
Todd Gamblin	bcf705b85e	Merge pull request #432 from RemoteConnectionManager/paraview_fix Paraview fix	2016-02-10 13:59:08 -08:00
Todd Gamblin	e23c260cb0	Merge pull request #402 from epfl-scitas/bugfix/netlib-scalapack Bugfix: netlib-scalapack does not work with all versions of python	2016-02-10 11:40:31 -08:00
Luigi Calori	d7b3ed08ab	add variant to select OpenGL2 Paraview backend	2016-02-10 15:40:05 +01:00
Luigi Calori	a1bd65550e	fix a reported hash mismatch on netcdf-4.4.0 tar download	2016-02-10 15:17:54 +01:00
Luigi Calori	fe8aca630c	add a variant to Qt for make dependency on mesa swlwctable	2016-02-10 14:58:00 +01:00
Luigi Calori	f729cf621a	fixing qhull: seems that dependency on cmake is essential when it is used	2016-02-10 13:29:36 +01:00
alalazo	71a25a109a	arpack-ng : added package	2016-02-05 11:00:37 +01:00
Todd Gamblin	15324c276f	Merge pull request #426 from epfl-scitas/packages/suitesparse Added package : SuiteSparse	2016-02-04 18:08:07 -07:00
alalazo	e2a95d4b50	eigen : added support for SuiteSparse	2016-02-04 16:27:26 +01:00
alalazo	e3a0e1881d	suitesparse : basic implementation	2016-02-04 16:00:39 +01:00
alalazo	031c292136	dakota : basic installation	2016-02-04 13:48:21 +01:00
Adam J. Stewart	e1b3c286ef	Add url for cmake, simplify url_for_version	2016-02-03 16:28:09 -06:00
Todd Gamblin	f38851b73d	Merge remote-tracking branch 'github/pull/99' into develop Conflicts: var/spack/repos/builtin/packages/cmake/package.py	2016-02-03 14:24:59 -07:00
Todd Gamblin	72ca311f17	Merge pull request #414 from epfl-scitas/issues/trilinos_385 fix : trilinos and dependencies	2016-02-03 11:42:53 -07:00
Todd Gamblin	c5455ceee5	Merge pull request #417 from mathstuf/hdf5-unsupported-flag hdf5: always pass the unsupported flag	2016-02-03 08:56:30 -07:00
Todd Gamblin	5a3338323c	Merge pull request #419 from adamjstewart/features/libgpg-error Add latest libgpg-error version	2016-02-03 08:56:06 -07:00
Todd Gamblin	8a4b86dac9	Merge pull request #420 from adamjstewart/features/qhull Add latest qhull version	2016-02-03 08:55:32 -07:00
Todd Gamblin	bc4bf71d8f	Merge pull request #421 from adamjstewart/features/phonopy Add Phonopy and PyYAML Python modules	2016-02-03 08:54:22 -07:00
Todd Gamblin	fe358e24e3	Merge pull request #423 from epfl-scitas/packages/opencv Added package : OpenCV	2016-02-03 08:52:58 -07:00
alalazo	44c1b06609	opencv : added package	2016-02-03 13:36:25 +01:00
alalazo	587d356d6e	openssl : added logic to version computation. The package now warns user if he depends on an old version of the library	2016-02-03 08:59:26 +01:00
Adam J. Stewart	d2fb1522a3	Add Phonopy and PyYAML Python modules	2016-02-02 12:54:24 -06:00
Adam J. Stewart	ab3698e3a4	Add latest qhull version	2016-02-02 11:42:31 -06:00
Adam J. Stewart	422e87badb	Add latest libgpg-error version	2016-02-02 10:57:58 -06:00
Ben Boeckel	2b140b9a34	hdf5: default +unsupported to on This flag can end up being required if a dependency tree ends up needing hdf5+cxx+parallel, but nothing turns it on. Since the core spack code puts this together, it ends up that the end user needs to specify it manually. Instead, just assume an unsupported configuration (since these are useful setups) and if anyone wants to seek upstream support, masking the flag can be done.	2016-02-01 11:46:33 -05:00
alalazo	c8d2275c06	opencv : reverted url_for_version modifications	2016-02-01 10:56:48 +01:00
alalazo	e67507478a	opencv : reverted url_for_version modifications	2016-02-01 10:55:39 +01:00
alalazo	b0707a61e7	Merge branch 'develop' of https://github.com/LLNL/spack into issues/trilinos_385	2016-02-01 10:54:17 +01:00
Todd Gamblin	9eb037bc87	Merge pull request #415 from adamjstewart/features/hwloc Checksum fix for hwloc	2016-02-01 02:41:47 -07:00
Todd Gamblin	140510fedf	Merge pull request #408 from adamjstewart/features/fish Modify url settings for fish package	2016-02-01 02:39:54 -07:00
alalazo	360abb070a	netcdf : fixed typo in configure option openssl : smarter URL computation	2016-02-01 08:33:03 +01:00
Gregory L. Lee	3bf6fed7b3	updated openssl version	2016-01-29 11:29:27 -08:00
Adam J. Stewart	d14d50beb6	Checksum fix for hwloc	2016-01-29 09:47:57 -06:00
Abhishek Kulkarni	74225544c6	Rename the hpx package to hpx-5.	2016-01-29 10:35:54 -05:00
Massimiliano Culpo	cd54793913	Cleaning up	2016-01-29 11:42:06 +01:00
alalazo	b574c4ad51	trilinos : updated package to meet changes in dependencies	2016-01-29 08:57:07 +01:00
Abhishek Kulkarni	5907cc0de5	Merge remote-tracking branch 'upstream/develop' into develop	2016-01-29 00:32:34 -05:00
Abhishek Kulkarni	2bea7f8d69	Add the HPX-5 package.	2016-01-29 00:29:20 -05:00
Todd Gamblin	9fb5ddbb4c	Merge pull request #411 from adamjstewart/features/pnetcdf Add PnetCDF and M4 packages	2016-01-28 20:52:59 -07:00
David Beckingsale	d9548c01af	Correct package URL	2016-01-28 15:47:37 -07:00
Adam J. Stewart	4f34031534	Add PnetCDF and M4 packages	2016-01-28 15:41:58 -06:00
David Beckingsale	7e65f4da82	Add the Caliper package	2016-01-28 13:22:56 -08:00
Gregory L. Lee	0e52c30bb8	added py-wheel package	2016-01-28 10:42:46 -08:00
Adam J. Stewart	06f3cc33ba	Modify url settings for fish package	2016-01-28 11:41:12 -06:00
alalazo	07bb6fef01	resource directive : now works with all the fetch strategies available	2016-01-28 10:58:56 +01:00
Adam J. Stewart	6122642b81	More NetCDF changes	2016-01-27 16:16:33 -06:00
Nicolas Richart	f1d8f30342	Bug fix: precedence in % operator seems to change depending in the python version	2016-01-27 10:54:41 +01:00
Todd Gamblin	90750f59c1	Merge pull request #400 from adamjstewart/features/netcdf Extensive modifications to NetCDF package	2016-01-26 19:31:14 -07:00
Tom Scogland	23af31cb1c	adding the cmocka unit testing library	2016-01-26 17:55:32 -08:00
Todd Gamblin	c344b30fc4	Merge pull request #342 from adamjstewart/features/hwloc Add url_for_version function to calculate url	2016-01-26 16:01:17 -08:00
Todd Gamblin	d7bd023afa	Merge pull request #339 from adamjstewart/features/hdf Add HDF package	2016-01-26 15:51:57 -08:00
Adam J. Stewart	81ccba202c	Make szip a variant	2016-01-26 15:38:22 -06:00
Adam J. Stewart	c6bb00085f	Extensive modifications to NetCDF package	2016-01-26 12:04:48 -06:00
Adam J. Stewart	1d18f2031c	Add szip variant	2016-01-25 14:57:33 -06:00
Matthew LeGendre	fa888a4ba1	Merge branch 'develop' into features/external-packages Conflicts: lib/spack/spack/cmd/mirror.py lib/spack/spack/concretize.py lib/spack/spack/config.py lib/spack/spack/spec.py lib/spack/spack/stage.py var/spack/packages/mvapich2/package.py	2016-01-25 10:52:17 -08:00
Todd Gamblin	b6731ea47c	Merge pull request #336 from scheibelp/features/boost-additive-libs additive compilation of boost libraries	2016-01-22 14:09:19 -08:00
Peter Scheibel	a653d2f5e2	Slightly more robust approach for setting defaults for noinstall_libs	2016-01-22 13:43:16 -08:00
Peter Scheibel	9f99ee61c7	1. added default install libs (atomic, test, locale, program_options) 2. clarify comment for default_noinstall_libs 3. renamed regex_icu variant to icu_support (both the locale and regex libs can use it) 4. explicitly set b2 install ICU_PATH when regex_icu is activated	2016-01-22 13:25:45 -08:00
Alfredo Gimenez	10de5a3ec7	Patch fix for boost@1.60.0%gcc@4.4.7	2016-01-22 13:02:18 -08:00
Peter Scheibel	4a55b97d11	Fixed reference	2016-01-22 12:37:12 -08:00
Peter Scheibel	2e58bc3113	Sticking with additive approach but now most libraries are installed by default.	2016-01-21 19:57:49 -08:00
Erik Schnetter	2f70c842b8	Disable patch that was merged into upstream in 1.10.2	2016-01-21 14:13:39 -05:00
Erik Schnetter	6b3f023d98	Update OpenMPI to 1.10.2	2016-01-21 14:05:16 -05:00
Todd Gamblin	10848c2e9a	Refactor args for Executable.__call__ - simplify output, error, and input redirection - `return_output=True` is now `output=str` - `return_output=True` will still work for the time being but is deprecated. - previously you could say `return_output=True` and `output=<stream>`, which wouldn't actually write to the stream. Now you actually can't specify erroneous cases since there is only one parameter with mutually exclusive options..	2016-01-21 10:46:33 -08:00
Todd Gamblin	25f7dbd3e9	Merge pull request #384 from epfl-scitas/packages/elpa added package : elpa	2016-01-21 09:14:28 -08:00
Adam J. Stewart	03d5ee6738	Remove constraint on dependency version	2016-01-21 10:02:33 -06:00
Adam J. Stewart	ea9d0c0263	Remove constraints on dependency versions	2016-01-21 09:58:47 -06:00
Adam J. Stewart	950246b331	Remove constraint on dependency version	2016-01-21 09:54:24 -06:00
alalazo	d9b344a247	Merge branch 'develop' of https://github.com/LLNL/spack into packages/elpa	2016-01-21 12:05:28 +01:00
Todd Gamblin	f0a6bfa23c	Merge pull request #376 from adamjstewart/features/mvapich2 Various updates to MVAPICH2 package	2016-01-21 01:59:35 -08:00
Todd Gamblin	dab65e4ba6	Merge pull request #380 from epfl-scitas/packages/mumps Adding packages MUMPS and ScaLAPACK	2016-01-21 01:58:57 -08:00
alalazo	785c01218f	elpa : added missing dependencies	2016-01-21 10:06:43 +01:00
alalazo	88f2a1d43a	Merge remote-tracking branch 'scitas/packages/mumps' into packages/elpa	2016-01-21 08:34:44 +01:00
alalazo	a8132470e4	Merge branch 'develop' into packages/elpa	2016-01-21 08:33:59 +01:00
Nicolas Richart	b71b478a36	Minor correction to install mumps+mpi	2016-01-20 18:31:02 +01:00
alalazo	19caac69d8	openmpi : turned torque support into a variant (default false) hdf5 : fixed a few bugs, removed suspicious macro deinition, etc.	2016-01-20 15:22:49 +01:00
Nicolas Richart	974fc65e0f	renaming packages to follow changes on develop	2016-01-20 14:38:55 +01:00
Nicolas Richart	65f65ec4e4	Adding MUMPS and ScaLAPACK	2016-01-20 14:21:44 +01:00
alalazo	ab27fdc692	elpa : commit partial package. Blocked by missing scalapack	2016-01-20 09:35:15 +01:00
Peter Scheibel	965af75d23	Merge branch 'develop' into features/boost-additive-libs	2016-01-19 17:27:18 -08:00
Adam J. Stewart	98706d31dc	Various updates to MVAPICH2 package Use url_for_version function to specify urls Add version 2.2b Add dedicated MRAIL variant Fix typo Make fortran compiler flags more specific	2016-01-19 12:46:15 -06:00
Todd Gamblin	9be37da077	Merge pull request #373 from adamjstewart/features/mpich Add verbs variant, remove deprecated configure flags	2016-01-19 08:59:59 -08:00
alalazo	e121faffa1	eigen : added package	2016-01-19 17:26:26 +01:00
Adam J. Stewart	0d42cdaffd	Merge branch 'develop' into features/hdf	2016-01-19 10:09:25 -06:00
Adam J. Stewart	530f8e5b26	Merge branch 'develop' into features/hdf * develop: (85 commits) Make libxcb compile with gcc 4.9. disable parallel install for glib (found races) disable cairo-trace, which is incompatible with older libiberty.h. Fix LaunchMon on newer gcc versions. Simplify output redirection in spack.util.executable Allow completely empty config files. Update cmake package to use http in all URLs. Fix create, diy, edit, and repo commands to use multiple repos. Add namespace option to find command. Temporary fix: Clang is the default compiler on Mac OS X. Netcdf requires cmake >=2.8.12 Mbedtls depends on cmake Update libtool to 2.4.6 Update Julia to 0.4.3 Make binutils build on OS X Add verbs and psm variants py-matplotlib: depend on freetype py-numpy: make blas/lapack optional dependencies qhull: apply patch to work with libc++'s standard library New package GNU tar ...	2016-01-19 10:07:21 -06:00
Adam J. Stewart	fbab88b0e1	Merge branch 'develop' into features/xz * develop: (85 commits) Make libxcb compile with gcc 4.9. disable parallel install for glib (found races) disable cairo-trace, which is incompatible with older libiberty.h. Fix LaunchMon on newer gcc versions. Simplify output redirection in spack.util.executable Allow completely empty config files. Update cmake package to use http in all URLs. Fix create, diy, edit, and repo commands to use multiple repos. Add namespace option to find command. Temporary fix: Clang is the default compiler on Mac OS X. Netcdf requires cmake >=2.8.12 Mbedtls depends on cmake Update libtool to 2.4.6 Update Julia to 0.4.3 Make binutils build on OS X Add verbs and psm variants py-matplotlib: depend on freetype py-numpy: make blas/lapack optional dependencies qhull: apply patch to work with libc++'s standard library New package GNU tar ...	2016-01-19 10:05:50 -06:00
Adam J. Stewart	58f18d5b12	Merge branch 'develop' into features/hwloc * develop: (85 commits) Make libxcb compile with gcc 4.9. disable parallel install for glib (found races) disable cairo-trace, which is incompatible with older libiberty.h. Fix LaunchMon on newer gcc versions. Simplify output redirection in spack.util.executable Allow completely empty config files. Update cmake package to use http in all URLs. Fix create, diy, edit, and repo commands to use multiple repos. Add namespace option to find command. Temporary fix: Clang is the default compiler on Mac OS X. Netcdf requires cmake >=2.8.12 Mbedtls depends on cmake Update libtool to 2.4.6 Update Julia to 0.4.3 Make binutils build on OS X Add verbs and psm variants py-matplotlib: depend on freetype py-numpy: make blas/lapack optional dependencies qhull: apply patch to work with libc++'s standard library New package GNU tar ...	2016-01-19 10:01:42 -06:00
Adam J. Stewart	d20ca32440	Merge branch 'develop' into features/mpc * develop: (85 commits) Make libxcb compile with gcc 4.9. disable parallel install for glib (found races) disable cairo-trace, which is incompatible with older libiberty.h. Fix LaunchMon on newer gcc versions. Simplify output redirection in spack.util.executable Allow completely empty config files. Update cmake package to use http in all URLs. Fix create, diy, edit, and repo commands to use multiple repos. Add namespace option to find command. Temporary fix: Clang is the default compiler on Mac OS X. Netcdf requires cmake >=2.8.12 Mbedtls depends on cmake Update libtool to 2.4.6 Update Julia to 0.4.3 Make binutils build on OS X Add verbs and psm variants py-matplotlib: depend on freetype py-numpy: make blas/lapack optional dependencies qhull: apply patch to work with libc++'s standard library New package GNU tar ...	2016-01-19 09:58:07 -06:00
Adam J. Stewart	f48fc0d8b1	Revert deprecated configure flags	2016-01-19 09:43:28 -06:00
Adam J. Stewart	16f1267c29	Merge branch 'develop' into features/mpich * develop: (43 commits) Make libxcb compile with gcc 4.9. disable parallel install for glib (found races) disable cairo-trace, which is incompatible with older libiberty.h. Fix LaunchMon on newer gcc versions. Simplify output redirection in spack.util.executable Allow completely empty config files. Fix create, diy, edit, and repo commands to use multiple repos. Add namespace option to find command. Temporary fix: Clang is the default compiler on Mac OS X. update compiler config test. add sanity check on config write as well as validation on read. Add jsonschema validation for config files. Make text wrapping off by default in tty, add a kwarg for it. add/remove/list working for new config format. Add Python 3 aliases to our argparse backport. All tests that call concretize() need to be MockPackagesTests. Fix bug in tests. Rework mirror configuration. Rework compiler configuration and simplify config.py logic. Remove mock_configs; tests no longer modify spack home directory. ...	2016-01-19 09:37:53 -06:00
Todd Gamblin	01c5b53ba1	Make libxcb compile with gcc 4.9.	2016-01-19 01:16:15 -08:00
Todd Gamblin	047f1b9de9	disable parallel install for glib (found races)	2016-01-19 01:16:15 -08:00
Todd Gamblin	b7b4faff96	disable cairo-trace, which is incompatible with older libiberty.h.	2016-01-19 01:16:14 -08:00
Todd Gamblin	67ea7ce0ab	Fix LaunchMon on newer gcc versions.	2016-01-19 01:16:14 -08:00
Todd Gamblin	8d6342c53d	Merge branch 'mplegendre-multi_pkgsrc_roots' into develop - This moves var/spack/packages to var/spack/repos/builtin/packages. - Packages that did not exist in the source branch, or were changed in develop, were moved into var/spack/repos/builtin/packages as part of the integration. Conflicts: lib/spack/spack/test/unit_install.py var/spack/repos/builtin/packages/clang/package.py	2016-01-19 01:16:08 -08:00
Adam J. Stewart	58162ec170	Add verbs variant, remove deprecated configure flags	2016-01-18 16:03:41 -06:00
Todd Gamblin	d802165e03	Merge pull request #355 from eschnett/eschnett/llvm LLVM depends on cmake, and does not depend on isl	2016-01-17 19:24:17 -08:00
Todd Gamblin	4bab6f9fdb	Update cmake package to use http in all URLs.	2016-01-17 18:55:36 -08:00
Todd Gamblin	afcd5420ee	Merge pull request #356 from eschnett/eschnett/tar New package GNU tar	2016-01-17 18:49:14 -08:00
Todd Gamblin	85e8f8eb6a	Merge pull request #353 from eschnett/eschnett/ncurses Install ncurses properly	2016-01-17 18:49:00 -08:00
Todd Gamblin	635e053e6d	Merge pull request #358 from adamjstewart/features/openmpi Add psm and verbs variants	2016-01-17 18:45:13 -08:00
Todd Gamblin	77c6038711	Merge pull request #370 from eschnett/eschnett/netcdf-cmake Netcdf requires cmake >=2.8.12	2016-01-17 18:31:56 -08:00
Todd Gamblin	a473830533	Merge pull request #367 from eschnett/eschnett/mbedtls-cmake Mbedtls depends on cmake	2016-01-17 18:26:07 -08:00
Todd Gamblin	99390be127	Merge pull request #366 from eschnett/eschnett/libtool-2.4.6 Update libtool to 2.4.6	2016-01-17 18:25:55 -08:00
Todd Gamblin	c20f8eb5b3	Merge pull request #365 from eschnett/eschnett/julia-0.4.3 Update Julia to 0.4.3	2016-01-17 18:25:45 -08:00
Todd Gamblin	1a145f68a7	Merge pull request #362 from eschnett/eschnett/binutils-osx Make binutils build on OS X	2016-01-17 18:25:24 -08:00
Erik Schnetter	81f1311a60	Netcdf requires cmake >=2.8.12	2016-01-17 14:57:08 -08:00
Erik Schnetter	f4b87e2967	Mbedtls depends on cmake	2016-01-17 11:05:15 -05:00
Erik Schnetter	60656b6255	Update libtool to 2.4.6	2016-01-17 11:03:40 -05:00
Erik Schnetter	e585a5d8a3	Update Julia to 0.4.3	2016-01-17 11:02:30 -05:00
Erik Schnetter	981cefe8d3	Make Boost build with MPI on OS X Boost does not build on OS X with either gold or binutils. The gold linker does not exist on Darwin, and binutils on Darwin provides an assembler that doesn't work for Boost. - Introduce a variant that specifies whether to build with binutils, defaulting to true for backward compatibility - Auto-detect whether we build on Darwin; in this case, set the gold and binutils variant defaults to false - Clean up configure flags for as and ld	2016-01-17 10:54:12 -05:00
Erik Schnetter	36a428b8fc	Make binutils build on OS X Binutils defines several global variables multiple times. Apparently this works fine under Linux, but it leads to a linker error on Darwin. Rename these global variables. Note that binutils on OS X is still not really useful, as important tools (e.g. ld) are not supported.	2016-01-17 10:49:13 -05:00
Peter Scheibel	d22cf1aed1	1. raise an exception if the multithreaded and singlethreaded options are both disabled 2. invoke the b2 installation once for each enabled threading option (apparently the install fails if a single call has both options enabled for mpi)	2016-01-15 18:07:41 -08:00
Gregory Becker	342f4bc2e0	Fixed virtual/cflag combination bug	2016-01-15 14:27:50 -08:00
Adam J. Stewart	eac795abc3	Add verbs and psm variants	2016-01-15 15:09:36 -06:00
Ben Boeckel	4f60948bff	py-matplotlib: depend on freetype Probably a missed dependency, but appeared on OS X.	2016-01-15 16:04:49 -05:00
Ben Boeckel	c3bf1a7741	py-numpy: make blas/lapack optional dependencies OS X is having trouble building these libraries, so make them optional dependencies.	2016-01-15 16:03:51 -05:00
Ben Boeckel	f6680a0051	qhull: apply patch to work with libc++'s standard library Only seen on OS X with clang right now.	2016-01-15 16:02:35 -05:00
Nicola Varini	7fc308ed26	Update to version 5.3	2016-01-15 17:04:25 +01:00
Nicola Varini	7d0256c9fb	Quantum-ESPRESSO package	2016-01-15 10:27:38 +01:00
Erik Schnetter	0a993cd9d7	New package GNU tar	2016-01-14 20:44:51 -05:00
Erik Schnetter	3e703cc281	LLVM depends on cmake, and does not depend on isl Add cmake requirement. Remove gmp and isl requirements. Using an external isl leads to a build failure for me on a fairly standard Fedora Linux workstation. The Spack package file says that isl is required for polly, however, the polly documentation states that as of LLVM 3.7, polly includes isl, and has no external dependencies any more.	2016-01-14 17:52:28 -05:00
Erik Schnetter	aa3897a880	Install ncurses properly Currently, ncurses's include files are installed into two separate subdirectories, "install/ncurses" and "install/ncursesw". The second level of subdirectories ("ncurses" and "ncursesw") are non-standard. I checked several systems to confirm this, and ncurses examples on the web also simply contain "#include <ncurses.h>" instead of "#include <ncurses/ncurses.h>", which would be necessary to use the currently installed ncurses packages. For example, this also breaks llvm, which uses ncurses, but does not expect the second level of subdirectories. I am now using the option "--enable-overwrite", which installs the header files directly in to ".../include". I also enable "widec" support all the time. These options are e.g. similar to the ones used by MacPorts, and I confirm that they make the llvm package build (which didn't build before).	2016-01-14 17:40:11 -05:00
Todd Gamblin	1268b41570	Merge pull request #293 from trws/llvm-rework Llvm rework	2016-01-14 01:13:39 -08:00
Todd Gamblin	93fdb06d7d	Merge pull request #273 from epfl-scitas/packages/R R : updated package	2016-01-14 00:13:27 -08:00
Adam J. Stewart	244ee673d6	Add latest version	2016-01-13 11:44:51 -06:00
Todd Gamblin	a56575a6d2	Merge pull request #324 from eschnett/eschnett/openblas-lapack Ensure that OpenBLAS provides a file liblapack.a	2016-01-13 08:26:26 -08:00
Erik Schnetter	aa1f96c73b	New package "cereal"	2016-01-13 11:21:52 -05:00
alalazo	78b57787fa	gmsh : added hdf5 support	2016-01-13 12:22:59 +01:00
alalazo	767f286a9f	gmsh : added fltk support	2016-01-13 11:26:10 +01:00
alalazo	ffaa4a8922	gmsh : added package with basic compile options	2016-01-13 10:05:19 +01:00
Todd Gamblin	8ead7783ab	Merge pull request #345 from eschnett/eschnett/petsc-python-2 Correct Python version constraint syntax	2016-01-12 14:26:28 -08:00
Erik Schnetter	8eb16ba02d	Merge branch 'develop' into eschnett/petsc-python-2 # Conflicts: # var/spack/packages/petsc/package.py	2016-01-12 14:36:37 -05:00
Adam J. Stewart	a6f2cc9cbf	Add required dependency version	2016-01-12 13:28:48 -06:00
Adam J. Stewart	180c673c78	Add different URL for older source code	2016-01-12 13:21:53 -06:00
Adam J. Stewart	6985d2c914	Add url_for_version function to calculate url	2016-01-12 13:00:05 -06:00
Adam J. Stewart	5520ce3c4a	Removed unnecessary URLs	2016-01-12 12:19:03 -06:00
Adam J. Stewart	9b3e0255f4	Add HDF package	2016-01-12 11:55:42 -06:00
Todd Gamblin	4ac530d289	Merge pull request #314 from eschnett/eschnett/libpciaccess-configure Build libpciaccess from tarball	2016-01-12 09:14:19 -08:00
Todd Gamblin	5bdc6e53e5	Merge pull request #323 from eschnett/eschnett/openssl-apps Ensure the APPS environment variable is not set when building OpenSSL	2016-01-12 09:13:50 -08:00
Todd Gamblin	dd0aa90aa1	Merge pull request #328 from eschnett/eschnett/lua-readline Resolve readline/ncurses dependency when building Lua	2016-01-12 09:13:21 -08:00
Todd Gamblin	1a3c0063a5	Merge pull request #329 from epfl-scitas/packages/cmake cmake : added variant that activates the build of the ncurses gui	2016-01-12 09:12:06 -08:00
alalazo	1f78b9c7af	parmetis : removed leftover import statement	2016-01-12 16:59:47 +01:00
alalazo	da8b08b5fe	parmetis : used spack install method instead of shutil.copy	2016-01-12 14:55:29 +01:00
alalazo	30da85c3d8	metis : added variant specified in BUILD.txt. Fixed wrong dependency on MPI. parmetis : added variants as in metis	2016-01-12 14:25:06 +01:00
Peter Scheibel	50727527bc	This commit makes the following changes: There are two sensible defaults for building boost libraries: build all of them or build none of them. Previously the Spack boost package took the first approach. This commit changes to building no libraries by default. The user can specify which libraries they need using variants (e.g. +iostreams to compile the boost iostreams library). If no libraries are built then a header-only install is performed (no compilation, just copy header files to prefix). The consequence of this change is that packages which specify a dependency on boost may now fail (until they are updated to specify exactly which boost libraries they need compiled). The user may now specify whether to build shared libraries (static libraries are always built) and whether to build libraries with/out multi-threading support (default is to only build with multi-threading support). The executable on the user-config.jam toolset line is set to Spack's cc script. Before, without this, the desired toolset was used but Spack deferred to the boost build system to choose the compiler version. bzip2 and zlib are always specified as dependencies when iostreams is built (before this could be controlled with the +compression variant).	2016-01-11 15:51:59 -08:00
Erik Schnetter	36d74d2a97	Correct Python version constraint syntax	2016-01-11 17:39:39 -05:00
Erik Schnetter	a5588e4bb7	Download package version with a configure script This avoids having to use autoconf, which requires many m4 scripts that are not always available.	2016-01-11 17:37:13 -05:00
Erik Schnetter	8af8c10559	Avoid key error when env var is unset	2016-01-11 17:33:44 -05:00
Todd Gamblin	85220dd77d	Revert "Require Python for PETSc"	2016-01-11 13:57:21 -08:00
Todd Gamblin	01f2c38ee7	Merge pull request #320 from eschnett/eschnett/parmetis-cmake parmetis requires cmake @2.8:	2016-01-11 13:56:28 -08:00
Todd Gamblin	25e398645f	Merge pull request #321 from eschnett/eschnett/petsc-python Require Python for PETSc	2016-01-11 13:56:10 -08:00
Todd Gamblin	c4f2373ac2	Merge pull request #318 from eschnett/eschnett/metis-cmake Require cmake @2.8: for metis	2016-01-11 13:56:04 -08:00
Todd Gamblin	d2b925c709	Merge pull request #312 from eschnett/eschnett/petsc-mpi Make PETSc build with OpenMPI	2016-01-11 13:53:51 -08:00
Todd Gamblin	87e8430921	Merge pull request #316 from eschnett/eschnett/tgz Use .tar.gz instead of .tar.xz in several packages for backward compatibility	2016-01-11 13:52:50 -08:00
Todd Gamblin	d380820f3a	Merge pull request #322 from eschnett/eschnett/gperftools-update Update gperftools	2016-01-11 13:52:05 -08:00
Todd Gamblin	309425833b	Merge pull request #325 from eschnett/eschnett/julia-update Several small updates to Julia	2016-01-11 13:48:09 -08:00
Todd Gamblin	9bbb9a8f0a	Merge pull request #330 from epfl-scitas/packages/cgal Added package : cgal	2016-01-11 13:47:55 -08:00
Todd Gamblin	054c6eefdb	Merge pull request #334 from adamjstewart/features/patchelf Add PatchELF package	2016-01-11 13:47:31 -08:00
Adam J. Stewart	adbe1d4f06	Add PatchELF package	2016-01-11 13:54:26 -06:00
Adam J. Stewart	6a51b1d570	Add SZip package	2016-01-11 13:43:31 -06:00
alalazo	81a389151f	cmake : added variant that activates the build of the ncurses gui	2016-01-11 13:00:23 +01:00
alalazo	625570e730	added package : cgal	2016-01-11 12:50:47 +01:00
Erik Schnetter	23c5a1e6e9	Build Lua on Darwin	2016-01-10 19:37:44 -05:00
Erik Schnetter	9f2dbc9df4	Update Lua to 5.3.2	2016-01-10 19:34:02 -05:00
Erik Schnetter	992b9c46dd	Resolve readline/ncurses dependency when building Lua	2016-01-10 13:44:53 -08:00
Erik Schnetter	79a1de2f17	Add a patch to prevent Julia running out of virtual memory	2016-01-09 10:47:31 -05:00
Erik Schnetter	b18732173a	Require Python to build Julia	2016-01-08 23:21:54 -05:00
Erik Schnetter	d9f1a55c90	Ensure than OpenBLAS provides a file liblapack.a OpenBLAS implements the virtual package "lapack", and its consumers apparently expect a "liblapack.a".	2016-01-08 22:48:37 -05:00
Erik Schnetter	d5ff7fda6e	Ensure the APPS environment variable is not set when building OpenSSL	2016-01-08 22:41:18 -05:00
Erik Schnetter	3d7e7c53c5	Require libunwind	2016-01-08 22:33:55 -05:00
Erik Schnetter	0c9acb0f62	Update gperftools to version 2.4	2016-01-08 22:32:00 -05:00
Erik Schnetter	2ac2985cf2	Require Python for PETSc PETSc requires Python for building. I have a case where an HPC system has a very old default Python version, too old for Spack. So I load a module for Python, which makes Spack work. This module relies on LD_LIBRARY_PATH. When building PETSc, Spack unsets LD_LIBRARY_PATH, breaking the Python that PETSc finds. Explicitly requiring Python for PETSc makes building PETSc work.	2016-01-08 22:24:42 -05:00
Erik Schnetter	e628896c2b	parmetis requires cmake @2.8:	2016-01-08 22:12:19 -05:00
Erik Schnetter	da8fd5b30a	Require cmake @2.8: for metis	2016-01-08 21:56:08 -05:00
Erik Schnetter	04f908a957	Require cmake @2.8:	2016-01-08 21:41:35 -05:00
Erik Schnetter	8da1dd2b45	Require cmake	2016-01-08 21:32:17 -05:00
Gregory Becker	6e5238d037	Fixing the fix and removing debug printing	2016-01-08 17:44:16 -08:00
Gregory Becker	2b2d4bae4e	Fixing multimethod test for new platforms	2016-01-08 17:38:37 -08:00
Gregory Becker	2b4dd8b9af	Fixed target satisfaction and updated tests accordingly	2016-01-08 16:30:27 -08:00
Gregory Becker	6ca1e5c4b0	Revert "added a bunch of packages and added submodule" This reverts commit `79808da760`.	2016-01-08 15:02:29 -08:00
Gregory Becker	86230b9ac8	Revert "make sure submodule is added in the correct location" This reverts commit `e9f7d033ff`.	2016-01-08 15:01:46 -08:00
Erik Schnetter	6214148d35	Use .tar.gz instead of .tar.xz for backward compatibility	2016-01-08 17:16:30 -05:00
Gregory Becker	a9e9f9afb0	Revert "removed package for python packages with problematic / duplicate names" This reverts commit `f3254ff02d`.	2016-01-08 14:14:26 -08:00
Gregory Becker	1b0d064743	Revert "clean up package.py file and remove duplicate file" This reverts commit `c809cc9273`.	2016-01-08 14:13:33 -08:00
Gregory Becker	d2da41b0bd	More file permissions chasing	2016-01-08 12:12:03 -08:00
Gregory Becker	49908386ef	changing problematic package.py file permissions back to 0644	2016-01-08 11:48:59 -08:00
Gregory L. Lee	7ad3e2b56b	new python packages	2016-01-08 11:09:11 -08:00
Gregory Becker	6ccd9d6fa4	Cleaned up naming conventions for architecture, split into platform and target	2016-01-07 11:49:01 -08:00
Gregory L. Lee	175f20a9dc	new and updated python packages	2016-01-07 11:12:47 -08:00
Erik Schnetter	1646bec1a4	Make PETSc build with OpenMPI	2016-01-07 13:54:47 -05:00
Todd Gamblin	dd04b6a873	Merge pull request #278 from eschnett/eschnett/hdf5-variants Enable several variants for HDF5	2016-01-06 23:50:40 -08:00
Todd Gamblin	a651572cfd	Merge pull request #307 from eschnett/eschnett/atop New package atop	2016-01-06 23:40:03 -08:00
Ben Boeckel	e790146627	paraview: add some extra arguments on OS X X shouldn't be used on OS X and spack expects a Unix-style install, not a .app bundle.	2016-01-06 12:05:05 -05:00
Erik Schnetter	fd7c1fe584	Avoid using tabs	2016-01-06 10:10:15 -05:00
Todd Gamblin	84c7e457e9	Merge pull request #302 from eschnett/eschnett/correct-boost Correct `join_path` in package boost	2016-01-06 04:34:44 -08:00
Todd Gamblin	a65fa54514	Merge pull request #270 from eschnett/eschnett/openssl-darwin Make OpenSSL build on Darwin	2016-01-06 04:07:16 -08:00
alalazo	7670dc7efc	glpk : added support for gmp	2016-01-06 10:05:48 +01:00
alalazo	24ba60168d	added package : glpk	2016-01-06 09:49:10 +01:00
Erik Schnetter	cfe54b201d	New package atop	2016-01-05 20:09:22 -05:00
Erik Schnetter	60d8413940	Support mbedtls, an alternative SSL library	2016-01-05 19:21:57 -05:00
Mike Nolta	2b801e2086	new package: py-astropy	2016-01-05 15:41:18 -05:00
Erik Schnetter	c18dfa058a	Add details to comment	2016-01-05 14:09:54 -05:00
Erik Schnetter	12632f16b8	Combine with other OpenSSL Darwin patch Set KERNEL_BITS. Don't use Darwin-specific configure script.	2016-01-05 13:17:17 -05:00
Erik Schnetter	25934200de	Merge branch 'develop' into eschnett/openssl-darwin	2016-01-05 13:09:57 -05:00
Erik Schnetter	24ced90913	Correct `join_path` in package boost	2016-01-05 09:40:30 -05:00
Todd Gamblin	20e8b67eb6	Merge pull request #297 from eschnett/eschnett/boost-darwin Support Darwin for Boost	2016-01-05 00:42:31 -08:00
Gregory Becker	ff82e41404	Merge branch 'externals' into crayport	2016-01-04 10:46:25 -08:00
Erik Schnetter	96e5905bce	Build multiple FFTW variants simultaneously FFTW can build only one floating point precision (float, double, long double, quad) at once, but they can all be installed simultaneously as the libraries have different names. It is common packages to decide only at run time which precision FFTW they need, and thus FFTW should offer all precisions at once.	2016-01-04 12:14:42 -05:00
Tom Scogland	133fda11f2	Merge remote branch 'origin/llvm-rework' into llvm-rework	2016-01-03 17:22:57 -08:00
Tom Scogland	884f317d50	tweak gold support, added to gcc The gold linker support and gold plugin variants now use the same name. Trying to apply use-flag-style discipline here despite the fact gold has other implications for clang, this way globally enabling gold will have a more consistent effect if that becomes possible. The gold support in gcc could use more testing to ensure it works consistently, but as long as a binutils including gold is used the gcc configure tends to pick it up, and it seems to work with 5.3.0 at least.	2016-01-03 17:22:13 -08:00
Tom Scogland	31803d10aa	bringing back configuration and build stages	2016-01-02 11:59:33 -08:00
Tom Scogland	356836ccbb	removed extraneous comment lines	2016-01-01 22:30:02 -08:00
Erik Schnetter	03537a6be4	Support Darwin for Boost Ensure that builds on Darwin use the "darwin" toolset. Also update Boost to 1.60.0.	2016-01-01 17:38:42 -05:00
Erik Schnetter	f5a49280c3	Enable C++ and Fortran languages by default	2016-01-01 17:26:49 -05:00
Todd Gamblin	3c64c18bfc	Merge pull request #274 from eschnett/eschnett/julia Add package for Julia	2015-12-31 15:46:52 -08:00
Todd Gamblin	48ebb25c25	Merge pull request #271 from eschnett/eschnett/pcre2 New package PCRE2	2015-12-31 15:40:03 -08:00
Todd Gamblin	7062b216b8	Merge pull request #258 from epfl-scitas/packages/scalasca Packages/scalasca	2015-12-31 15:27:39 -08:00
Tom Scogland	48f19b5fde	add the gold linker to binutils	2015-12-30 16:59:39 -08:00
Tom Scogland	5d89fb8dfa	ensure that clang-query gets installed	2015-12-30 16:59:39 -08:00
Tom Scogland	4ae98f8b21	significant llvm update This update significantly reworks the llvm and clang packages. The llvm package now includes variants allowing it to build and install any and all of: * clang * lldb * llvm's libunwind (why, WHY did they name it this?!?) * polly (including building it directly into the clang tools, 3.7.0 only) * clang extra tools * compiler-rt (sanitizers) * clang lto (the gold linker plugin that allows same to work) * libcxx/libcxxabi * libopenmp, also setting the default openmp runtime to same, when parameters happen this shoudl be an option of libomp or libgomp Ideally, this should have rpath setup like the gcc package does, but clang's driver has no support for specs as such, and no clearly equivalent mechanism either. If anyone has ideas on this, they would be welcome. One significant note related to gcc though, if you test this on LLNL systems, or anywhere that has multiple GCCs straddling the dwarf2 boundary and sharing a libstdc++, build a gcc with spack and use that to build clang. If you use a gcc4.8+ to build this with an older libstdc++ it will fail on missing unwind symbols because of the discrepancy. Resource handling has been changed slightly to move the unpacked archive into the target rather than use symlinks, because symlinks break certain kinds of relative paths, and orders resource staging such that nested resources are unpacked after outer ones.	2015-12-30 16:59:39 -08:00
Tom Scogland	01f811d546	legacy mysql bindings for python	2015-12-30 11:18:13 -08:00

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1936 commits