Merge branch 'davydden-trilinos_extra' into develop
This commit is contained in:
Todd Gamblin
commit
0ceb7c411b
3 changed files with 225 additions and 11 deletions
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@ -23,4 +23,14 @@ def install(self, spec, prefix):
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# FIXME : this actually uses the current workaround
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# FIXME : (blas / lapack always provide libblas and liblapack as aliases)
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make('install', 'INSTALL=%s' % prefix, 'BLAS=-lblas', 'LAPACK=-llapack')
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make('install', 'INSTALL=%s' % prefix,
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# inject Spack compiler wrappers
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'AUTOCC=no',
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'CC=cc',
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'CXX=c++',
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'F77=f77',
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# BLAS arguments require path to libraries
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'BLAS=-lblas',
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'LAPACK=-llapack')
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@ -1,15 +1,22 @@
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from spack import *
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import os, sys, glob
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# Trilinos is complicated to build, as an inspiration a couple of links to other repositories which build it:
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# https://github.com/hpcugent/easybuild-easyblocks/blob/master/easybuild/easyblocks/t/trilinos.py#L111
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# https://github.com/koecher/candi/blob/master/deal.II-toolchain/packages/trilinos.package
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# https://gitlab.com/configurations/cluster-config/blob/master/trilinos.sh
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# https://github.com/Homebrew/homebrew-science/blob/master/trilinos.rb
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# and some relevant documentation/examples:
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# https://github.com/trilinos/Trilinos/issues/175
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class Trilinos(Package):
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"""
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The Trilinos Project is an effort to develop algorithms and enabling technologies within an object-oriented
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"""The Trilinos Project is an effort to develop algorithms and enabling technologies within an object-oriented
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software framework for the solution of large-scale, complex multi-physics engineering and scientific problems.
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A unique design feature of Trilinos is its focus on packages.
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"""
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homepage = "https://trilinos.org/"
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url = "http://trilinos.csbsju.edu/download/files/trilinos-12.2.1-Source.tar.gz"
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version('12.6.1', 'adcf2d3aab74cdda98f88fee19cd1442604199b0515ee3da4d80cbe8f37d00e4')
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version('12.4.2', '7c830f7f0f68b8ad324690603baf404e')
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version('12.2.1', '6161926ea247863c690e927687f83be9')
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version('12.0.1', 'bd99741d047471e127b8296b2ec08017')
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@ -17,8 +24,16 @@ class Trilinos(Package):
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version('11.14.2', 'a43590cf896c677890d75bfe75bc6254')
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version('11.14.1', '40febc57f76668be8b6a77b7607bb67f')
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variant('shared', default=True, description='Enables the build of shared libraries')
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variant('debug', default=False, description='Builds a debug version of the libraries')
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variant('metis', default=True, description='Compile with METIS and ParMETIS')
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variant('mumps', default=True, description='Compile with support for MUMPS solvers')
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variant('superlu-dist', default=True, description='Compile with SuperluDist solvers')
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variant('hypre', default=True, description='Compile with Hypre preconditioner')
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variant('hdf5', default=True, description='Compile with HDF5')
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variant('suite-sparse', default=True, description='Compile with SuiteSparse solvers')
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# not everyone has py-numpy activated, keep it disabled by default to avoid configure errors
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variant('python', default=False, description='Build python wrappers')
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variant('shared', default=True, description='Enables the build of shared libraries')
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variant('debug', default=False, description='Builds a debug version of the libraries')
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# Everything should be compiled with -fpic
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depends_on('blas')
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@ -27,28 +42,205 @@ class Trilinos(Package):
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depends_on('matio')
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depends_on('glm')
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depends_on('swig')
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depends_on('metis',when='+metis')
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depends_on('suite-sparse',when='+suite-sparse')
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# MPI related dependencies
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depends_on('mpi')
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depends_on('netcdf+mpi')
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depends_on('parmetis',when='+metis')
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# Trilinos' Tribits config system is limited which makes it
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# very tricky to link Amesos with static MUMPS, see
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# https://trilinos.org/docs/dev/packages/amesos2/doc/html/classAmesos2_1_1MUMPS.html
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# One could work it out by getting linking flags from mpif90 --showme:link (or alike)
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# and adding results to -DTrilinos_EXTRA_LINK_FLAGS
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# together with Blas and Lapack and ScaLAPACK and Blacs and -lgfortran and
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# it may work at the end. But let's avoid all this by simply using shared libs
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depends_on('mumps@5.0:+mpi+shared',when='+mumps')
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depends_on('scalapack',when='+mumps')
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depends_on('superlu-dist',when='+superlu-dist')
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depends_on('hypre~internal-superlu',when='+hypre')
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depends_on('hdf5+mpi',when='+hdf5')
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depends_on('python') # Needs py-numpy activated
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depends_on('python',when='+python')
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patch('umfpack_from_suitesparse.patch')
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# check that the combination of variants makes sense
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def variants_check(self):
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if '+superlu-dist' in self.spec and self.spec.satisfies('@:11.4.3'):
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# For Trilinos v11 we need to force SuperLUDist=OFF,
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# since only the deprecated SuperLUDist v3.3 together with an Amesos patch
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# is working.
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raise RuntimeError('The superlu-dist variant can only be used with Trilinos @12.0.1:')
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def install(self, spec, prefix):
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self.variants_check()
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cxx_flags = []
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options = []
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options.extend(std_cmake_args)
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mpi_bin = spec['mpi'].prefix.bin
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options.extend(['-DTrilinos_ENABLE_ALL_PACKAGES:BOOL=ON',
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'-DTrilinos_ENABLE_ALL_OPTIONAL_PACKAGES:BOOL=ON',
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'-DTrilinos_VERBOSE_CONFIGURE:BOOL=OFF',
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'-DTrilinos_ENABLE_TESTS:BOOL=OFF',
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'-DTrilinos_ENABLE_EXAMPLES:BOOL=OFF',
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'-DCMAKE_BUILD_TYPE:STRING=%s' % ('Debug' if '+debug' in spec else 'Release'),
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'-DCMAKE_BUILD_TYPE:STRING=%s' % ('DEBUG' if '+debug' in spec else 'RELEASE'),
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'-DBUILD_SHARED_LIBS:BOOL=%s' % ('ON' if '+shared' in spec else 'OFF'),
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'-DTPL_ENABLE_MPI:STRING=ON',
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'-DBLAS_LIBRARY_DIRS:PATH=%s' % spec['blas'].prefix,
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'-DLAPACK_LIBRARY_DIRS:PATH=%s' % spec['lapack'].prefix
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'-DTPL_ENABLE_MPI:BOOL=ON',
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'-DMPI_BASE_DIR:PATH=%s' % spec['mpi'].prefix,
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'-DTPL_ENABLE_BLAS=ON',
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'-DBLAS_LIBRARY_NAMES=blas', # FIXME: don't hardcode names
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'-DBLAS_LIBRARY_DIRS=%s' % spec['blas'].prefix.lib,
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'-DTPL_ENABLE_LAPACK=ON',
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'-DLAPACK_LIBRARY_NAMES=lapack',
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'-DLAPACK_LIBRARY_DIRS=%s' % spec['lapack'].prefix,
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'-DTPL_ENABLE_Boost:BOOL=ON',
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'-DBoost_INCLUDE_DIRS:PATH=%s' % spec['boost'].prefix.include,
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'-DBoost_LIBRARY_DIRS:PATH=%s' % spec['boost'].prefix.lib,
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'-DTrilinos_ENABLE_EXPLICIT_INSTANTIATION:BOOL=ON',
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'-DTrilinos_ENABLE_CXX11:BOOL=ON',
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'-DTPL_ENABLE_Netcdf:BOOL=ON',
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'-DTPL_ENABLE_HYPRE:BOOL=%s' % ('ON' if '+hypre' in spec else 'OFF'),
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'-DTPL_ENABLE_HDF5:BOOL=%s' % ('ON' if '+hdf5' in spec else 'OFF'),
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])
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# Fortran lib
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libgfortran = os.path.dirname (os.popen('%s --print-file-name libgfortran.a' % join_path(mpi_bin,'mpif90') ).read())
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options.extend([
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'-DTrilinos_EXTRA_LINK_FLAGS:STRING=-L%s/ -lgfortran' % libgfortran,
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'-DTrilinos_ENABLE_Fortran=ON'
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])
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# for build-debug only:
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#options.extend([
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# '-DCMAKE_VERBOSE_MAKEFILE:BOOL=TRUE'
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#])
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# suite-sparse related
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if '+suite-sparse' in spec:
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options.extend([
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'-DTPL_ENABLE_Cholmod:BOOL=OFF', # FIXME: Trilinos seems to be looking for static libs only, patch CMake TPL file?
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#'-DTPL_ENABLE_Cholmod:BOOL=ON',
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#'-DCholmod_LIBRARY_DIRS:PATH=%s' % spec['suite-sparse'].prefix.lib,
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#'-DCholmod_INCLUDE_DIRS:PATH=%s' % spec['suite-sparse'].prefix.include,
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'-DTPL_ENABLE_UMFPACK:BOOL=ON',
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'-DUMFPACK_LIBRARY_DIRS:PATH=%s' % spec['suite-sparse'].prefix.lib,
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'-DUMFPACK_INCLUDE_DIRS:PATH=%s' % spec['suite-sparse'].prefix.include,
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'-DUMFPACK_LIBRARY_NAMES=umfpack;amd;colamd;cholmod;suitesparseconfig'
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])
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else:
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options.extend([
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'-DTPL_ENABLE_Cholmod:BOOL=OFF',
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'-DTPL_ENABLE_UMFPACK:BOOL=OFF',
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])
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# metis / parmetis
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if '+metis' in spec:
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options.extend([
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'-DTPL_ENABLE_METIS:BOOL=ON',
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'-DMETIS_LIBRARY_DIRS=%s' % spec['metis'].prefix.lib,
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'-DMETIS_LIBRARY_NAMES=metis',
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'-DTPL_METIS_INCLUDE_DIRS=%s' % spec['metis'].prefix.include,
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'-DTPL_ENABLE_ParMETIS:BOOL=ON',
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'-DParMETIS_LIBRARY_DIRS=%s;%s' % (spec['parmetis'].prefix.lib,spec['metis'].prefix.lib),
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'-DParMETIS_LIBRARY_NAMES=parmetis;metis',
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'-DTPL_ParMETIS_INCLUDE_DIRS=%s' % spec['parmetis'].prefix.include
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])
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else:
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options.extend([
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'-DTPL_ENABLE_METIS:BOOL=OFF',
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'-DTPL_ENABLE_ParMETIS:BOOL=OFF',
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])
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# mumps / scalapack
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if '+mumps' in spec:
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options.extend([
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'-DTPL_ENABLE_MUMPS:BOOL=ON',
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'-DMUMPS_LIBRARY_DIRS=%s' % spec['mumps'].prefix.lib,
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'-DMUMPS_LIBRARY_NAMES=dmumps;mumps_common;pord', # order is important!
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'-DTPL_ENABLE_SCALAPACK:BOOL=ON',
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'-DSCALAPACK_LIBRARY_NAMES=scalapack' # FIXME: for MKL it's mkl_scalapack_lp64;mkl_blacs_mpich_lp64
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])
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# see https://github.com/trilinos/Trilinos/blob/master/packages/amesos/README-MUMPS
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cxx_flags.extend([
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'-DMUMPS_5_0'
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])
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else:
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options.extend([
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'-DTPL_ENABLE_MUMPS:BOOL=OFF',
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'-DTPL_ENABLE_SCALAPACK:BOOL=OFF',
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])
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# superlu-dist:
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if '+superlu-dist' in spec:
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# Amesos, conflicting types of double and complex SLU_D
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# see https://trilinos.org/pipermail/trilinos-users/2015-March/004731.html
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# and https://trilinos.org/pipermail/trilinos-users/2015-March/004802.html
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options.extend([
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'-DTeuchos_ENABLE_COMPLEX:BOOL=OFF',
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'-DKokkosTSQR_ENABLE_Complex:BOOL=OFF'
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])
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options.extend([
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'-DTPL_ENABLE_SuperLUDist:BOOL=ON',
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'-DSuperLUDist_LIBRARY_DIRS=%s' % spec['superlu-dist'].prefix.lib,
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'-DSuperLUDist_INCLUDE_DIRS=%s' % spec['superlu-dist'].prefix.include
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])
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if spec.satisfies('^superlu-dist@4.0:'):
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options.extend([
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'-DHAVE_SUPERLUDIST_LUSTRUCTINIT_2ARG:BOOL=ON'
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])
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else:
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options.extend([
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'-DTPL_ENABLE_SuperLUDist:BOOL=OFF',
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])
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# python
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if '+python' in spec:
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options.extend([
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'-DTrilinos_ENABLE_PyTrilinos:BOOL=ON'
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])
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else:
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options.extend([
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'-DTrilinos_ENABLE_PyTrilinos:BOOL=OFF'
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])
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# collect CXX flags:
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options.extend([
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'-DCMAKE_CXX_FLAGS:STRING=%s' % (' '.join(cxx_flags)),
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])
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# disable due to compiler / config errors:
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options.extend([
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'-DTrilinos_ENABLE_SEACAS=OFF',
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'-DTrilinos_ENABLE_Pike=OFF',
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'-DTrilinos_ENABLE_STK=OFF'
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])
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if sys.platform == 'darwin':
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options.extend([
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'-DTrilinos_ENABLE_FEI=OFF'
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])
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with working_dir('spack-build', create=True):
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cmake('..', *options)
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make()
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make('install')
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# When trilinos is built with Python, libpytrilinos is included through
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# cmake configure files. Namely, Trilinos_LIBRARIES in TrilinosConfig.cmake
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# contains pytrilinos. This leads to a run-time error:
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# Symbol not found: _PyBool_Type
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# and prevents Trilinos to be used in any C++ code, which links executable
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# against the libraries listed in Trilinos_LIBRARIES.
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# See https://github.com/Homebrew/homebrew-science/issues/2148#issuecomment-103614509
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# A workaround it to remove PyTrilinos from the COMPONENTS_LIST :
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if '+python' in self.spec:
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filter_file(r'(SET\(COMPONENTS_LIST.*)(PyTrilinos;)(.*)', (r'\1\3'), '%s/cmake/Trilinos/TrilinosConfig.cmake' % prefix.lib)
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# The shared libraries are not installed correctly on Darwin; correct this
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if (sys.platform == 'darwin') and ('+shared' in spec):
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fix_darwin_install_name(prefix.lib)
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@ -0,0 +1,12 @@
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diff --git a/cmake/TPLs/FindTPLUMFPACK.cmake b/cmake/TPLs/FindTPLUMFPACK.cmake
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index 963eb71..998cd02 100644
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--- a/cmake/TPLs/FindTPLUMFPACK.cmake
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+++ b/cmake/TPLs/FindTPLUMFPACK.cmake
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@@ -55,6 +55,6 @@
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TRIBITS_TPL_FIND_INCLUDE_DIRS_AND_LIBRARIES( UMFPACK
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- REQUIRED_HEADERS umfpack.h amd.h UFconfig.h
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+ REQUIRED_HEADERS umfpack.h amd.h SuiteSparse_config.h
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REQUIRED_LIBS_NAMES umfpack amd
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)
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