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1936 commits

Author SHA1 Message Date
Erik Schnetter
94df1b801a Update NetCDF to version 4.4.1 
This version supports HDF5 1.10 in a backward-compatible manner.
 2016-07-18 20:11:32 -04:00
Todd Gamblin
7555c3d949 Merge pull request #1204 from goxberry/cmake-3.6.0 
cmake@3.6.0
 2016-07-18 16:53:17 -07:00
Todd Gamblin
25a9181a1b Merge pull request #1287 from mwilliammyers/package-jasper 
jasper: Add new jasper package
 2016-07-18 15:43:18 -07:00
mwilliammyers
02340062b4 package - jasper - Add new jasper package 2016-07-18 16:17:07 -06:00
Todd Gamblin
607813d5ce setuptools is a build dependency in numpy. 2016-07-18 14:13:14 -07:00
Todd Gamblin
a9ed2296a1 Merge pull request #1282 from eschnett/eschnett/py-numpy 
py-numpy: Add py-setuptools dependencies
 2016-07-18 13:58:17 -07:00
Todd Gamblin
fa0bbb57ea Merge pull request #1270 from davydden/pkg/mumps_scalapack_fix_blas 
Pkg/mumps scalapack fix blas
 2016-07-18 13:57:26 -07:00
Erik Schnetter
49cd6f6269 py-numpy: Add py-setuptools dependencies 
Closes #1281.
 2016-07-18 16:01:48 -04:00
Todd Gamblin
089189afaf Merge pull request #1238 from davydden/pkg/mkl_update 
mkl: add provide blas/lapack
 2016-07-18 11:52:30 -07:00
Todd Gamblin
b3789a4693 Merge pull request #1269 from davydden/pkg/hypre_trilinos_blas 
Pkg/hypre trilinos blas
 2016-07-18 03:06:37 -07:00
Denis Davydov
2e4966c854 netlib-scalapack: use dso_suffix 2016-07-18 10:11:18 +02:00
Todd Gamblin
c898b9db04 Merge pull request #1188 from epfl-scitas/packages/py-numpy 
RPATH for blas in py numpy
 2016-07-17 21:20:39 -07:00
Todd Gamblin
28ce08b9e2 Merge pull request #1258 from eschnett/eschnett/openmpi-2.0.0 
Update to OpenMPI 2.0.0
 2016-07-17 21:01:21 -07:00
Denis Davydov
1bd3a702c9 mumps: flake8 fixes 2016-07-16 15:14:06 +02:00
Denis Davydov
561748a063 netlib-scalapack: flake8 fixes 2016-07-16 08:03:54 +02:00
Denis Davydov
9ea4f80f15 flake8 fixes 2016-07-16 07:58:51 +02:00
Denis Davydov
0752eccfa5 mumps: don't hardcode blas name; remove unused depends_on(lapack) 2016-07-16 07:38:42 +02:00
Denis Davydov
6175ce7559 netlib-scalapack: make sure Spack's Lapack is used 2016-07-16 07:37:38 +02:00
Denis Davydov
987fb137f9 trilinos: don't hardcode blas/lapack names 2016-07-16 07:31:38 +02:00
Denis Davydov
514c61b8fe hypre: don't hardcode blas/lapack/mpi; optionally run tests 2016-07-16 07:28:31 +02:00
Erik Schnetter
5a1ed51dcd Correct indentation 2016-07-15 18:10:33 -04:00
becker33
c0be585b67 Merge pull request #1168 from epfl-scitas/packages/gts 
gts : added package
 2016-07-15 14:07:59 -07:00
becker33
656b2d562f Merge pull request #1177 from epfl-scitas/packages/swiftsim_and_metis 
swiftsim : fixed configuration for metis
 2016-07-15 14:05:28 -07:00
becker33
f761130343 Merge pull request #1187 from paulhopkins/bugfix/python-updates 
Bugfix/python updates
 2016-07-15 14:04:46 -07:00
becker33
f1d85ac2e9 Merge pull request #1227 from glennpj/ggvis 
New package - r-ggvis
 2016-07-15 14:00:15 -07:00
becker33
37ce4108ce Merge pull request #1254 from mdevlin1/features/hmmer 
add HMMER package
 2016-07-15 13:52:56 -07:00
Erik Schnetter
4663288b49 Update to OpenMPI 2.0.0 2016-07-15 13:00:48 -04:00
Mitchell Devlin
5f1b6f000d add HMMER package 2016-07-15 11:03:57 -05:00
Denis Davydov
b29b7595dd mkl: add info on interface and threading layers to the docstring 2016-07-15 17:35:10 +02:00
Todd Gamblin
077848fc0b Merge pull request #378 from mathstuf/dep-types 
dependency types
 2016-07-15 00:29:16 -07:00
Todd Gamblin
f3e9588457 Fix package name bug. 2016-07-14 23:15:54 -07:00
Gregory Becker
487ec2aff1 added py-pydatalog package 2016-07-14 23:12:35 -07:00
Todd Gamblin
b8e2799700 Add GNU Prolog package. 2016-07-14 14:38:30 -07:00
Ben Boeckel
a0584c78a8 foam-extend, sundials: add cmake as a builddep 
The sundials doesn't use CMake directly, but it is referenced in the
patch step. I suspect it calls CMake somewhere else in its build system.
 2016-07-14 16:21:47 -04:00
Ben Boeckel
d71a12438b cantera: use nolink for python module dependencies 
Unsure about this, but this is probably true.
 2016-07-14 16:21:47 -04:00
Ben Boeckel
39aef5fc00 lua: bring in run deps of build and run deps 2016-07-14 16:21:47 -04:00
Ben Boeckel
a82385cdae R: look only at run dependencies of build and run deps 2016-07-14 16:21:46 -04:00
Ben Boeckel
0ca1a481a3 python: setup the dependent environment properly 
We want the run dependencies of all build and run dependencies of the
current package.
 2016-07-14 16:21:46 -04:00
Ben Boeckel
ac1701ae29 msgpack-c: add missing dependency on cmake 2016-07-14 16:21:46 -04:00
Ben Boeckel
77965ce5bf py-matplotlib: require py-setuptools to build 2016-07-14 16:21:46 -04:00
Ben Boeckel
6fd45520da deptypes: mark deptypes in packages 2016-07-14 16:21:46 -04:00
Ben Boeckel
45c675fe7f spack: introduce dependency types 
deptypes: allow for different queries

For things like Python modules, they are required for the build and
runtime, but rather than adding a new parameter for what to query across
the dependency DAG, just expose the recursive query parameter.
 2016-07-14 16:21:46 -04:00
Ben Boeckel
bdf82246f7 darwin: explicitly use the 'when=' kwarg 2016-07-14 16:21:45 -04:00
Ben Boeckel
1ae43b3405 doxygen: add missing import 2016-07-14 16:21:45 -04:00
Denis Davydov
668b4f1b2c mkl: set MKLROOT 2016-07-13 23:36:23 +02:00
Adam J. Stewart
3864da6300 Flake8 2016-07-13 11:45:16 -05:00
Adam J. Stewart
d09b0c95ec Filter both makefiles to allow intel to build bzip2 2016-07-13 11:45:16 -05:00
Denis Davydov
52ca215e29 mkl: add provide blas/lapack 2016-07-13 11:42:40 +02:00
Glenn Johnson
955d02049c New package - r-ggvis 
Bring in ggvis and dependencies.

GGvis is an implementaion of the 'Grammar of Graphics', combined with
shiny.
 2016-07-12 12:27:54 -05:00
Todd Gamblin
069de3f008 Merge pull request #1223 from glennpj/tidyr 
New package - r-tidyr
 2016-07-12 00:23:09 -07:00