Commit graph

29072 commits

Author SHA1 Message Date
Erik Schnetter
881a0d4462
runc: New version 1.1.4 (#34815) 2023-01-10 16:07:56 -08:00
Alex Hedges
8d83af732a
shellcheck: add new package (#34831) 2023-01-10 15:31:20 -08:00
Benjamin S. Kirk
a5a2918202
autoconf: fix for long perl shebangs with autoconf@2.70+ (#34331)
autoconf 2.70 uses use warnings instead of -w so that PERL=/usr/bin/env perl can be passed, but we want to fix absolute paths anyhow through sbang upon install. So, we stick to patching the one perl script that's used during the build.
2023-01-10 14:27:29 -08:00
David Zmick
8dc3a09104
ruby-gist: add new package (#34852) 2023-01-10 14:14:49 -08:00
Scott Wittenburg
8f6f77ac9f
gitlab ci: fix tags for pipeline generation jobs (#34789)
Gitlab does not merge lists when a job extends two other definitions
that include the same list (e.g. tags).  Also, it merges dictionaries
as long as the keys are distinct, but just takes the last mentioned
value when there are key collisions.

This change makes sure that when different tags are needed by a
pipeline, the ones we want are actually provided.  It also changes
the example stack to better follow this pattern so we do not lead
developers astray in the future.
2023-01-10 10:06:26 -07:00
Wouter Deconinck
d0bd8f74cf
root: conflicts +ipo (#34842)
ROOT does not build successfully with `+ipo`, with symptoms as in https://github.com/root-project/root/issues/10777, and discussed most recently in https://github.com/root-project/root/issues/11135. As indicated there, LTO is not a supported build configuration. As of 6.26.10 there is no estimate for a fix since upstream is still broken.
2023-01-10 17:09:10 +01:00
Massimiliano Culpo
9d00e7d15d
Remove **kwargs from function signatures in llnl.util.filesystem (#34804)
Since we dropped support for Python 2.7, we can embrace using keyword only arguments 
for many functions in Spack that use **kwargs in the function signature. Here this is done 
for the llnl.util.filesystem module.

There were a couple of bugs lurking in the code related to typo-like errors when retrieving
from kwargs. Those have been fixed as well.
2023-01-10 14:23:42 +01:00
Alex Richert
cc333b600c
Add variants for overriding ESMF_OS and ESMF_COMM for ESMF package (#34808)
* Add variants for overriding ESMF_OS and ESMF_COMM for ESMF package

* Add doco for esmf_os/esmf_comm variants
2023-01-10 14:04:16 +01:00
Pranav Sivaraman
006969a8cd
xsbench: update version and add cuda support (#34597)
* Update xsbench to version 20

XSBench version 20 has implementations for new
architectures and accelerators.

* Added CUDA support for XSBench

* Fixed style issues
2023-01-10 13:59:30 +01:00
Axel Huebl
d2618cd640
WarpX 23.01 (#34793)
Update `warpx` & `py-warpx` to the latest release.
2023-01-10 04:47:25 -08:00
Jonathon Anderson
807b87068a
style: Run mypy last (#34687) 2023-01-10 04:37:41 -08:00
Jonathon Anderson
6879c35d1c
FileCache: Delete the new cache file on exception (#34623)
The code in FileCache for write_transaction attempts to delete the temporary file when an exception occurs under the context by calling shutil.rmtree. However, rmtree only operates on directories while the rest of FileCache uses normal files. This causes an empty file to be written to the cache key when unneeded.

Use os.remove instead which operates on normal files.

Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
2023-01-10 13:36:12 +01:00
Alberto Invernizzi
f1b8bc97f0
neovim: version 0.8.2 (#34777)
* add version 0.8.2

* conflict for newer libvterm versions for older neovim releases

Co-authored-by: Tom Scogland <scogland1@llnl.gov>
2023-01-10 13:29:43 +01:00
Wouter Deconinck
6fefb92413
cernlib: depends_on freetype, libnsl, libxcrypt, openssl; and patch (#34702)
* cernlib: depends_on freetype, libnsl, libxcrypt, openssl; and patch

In addition to #34448, cernlib depends on these additional packages.
This also applies a patch to the current release in which crypto is
specified wbere libcrypt (in libxcrypt) is actually needed. Because
the upstream git repository is behind a CERN login, we cannot patch
by gitlab URL link.

* [@spackbot] updating style on behalf of wdconinc

Co-authored-by: wdconinc <wdconinc@users.noreply.github.com>
2023-01-10 13:25:57 +01:00
Bryce Allen
03a2feef88
pfunit: fix max_array_rank for 4+, line len (#34713)
* pfunit: fix max_array_rank for 4+, line len

* pfunit: only use fortran flags when necessary

* pfunit: fix, version ranges are inclusive
2023-01-10 13:24:02 +01:00
Wouter Deconinck
416615f30b
spdlog: new version 1.11.0 depends_on fmt@9: when +fmt_external (#34731)
This adds a new version of spdlog,
https://github.com/gabime/spdlog/releases/tag/v1.11.0

While the release notes are ambiguous, I think that this PR,
https://github.com/gabime/spdlog/issues/2485, indicates that
spdlog from that point on uses features of fmt@9:.
2023-01-10 13:20:32 +01:00
Adam J. Stewart
b62c4276c9
py-pydocstyle: add v6.2 (#34785) 2023-01-10 13:17:00 +01:00
Carson Woods
b9861f7bbb
Add new versions of Reframe (#34801) 2023-01-10 13:09:18 +01:00
Erik Schnetter
856fe5941a
libcap: 2.66 & GOLANG=no (#34813)
Co-authored-by: Harmen Stoppels <me@harmenstoppels.nl>
2023-01-10 13:02:32 +01:00
Wileam Y. Phan
0f7f600d1f
Add CUDA 12.0 (#34664) 2023-01-10 11:51:23 +01:00
eugeneswalker
9283a94ee4
e4s ci: use 2023-01-01 runner image (#34827) 2023-01-10 10:47:28 +00:00
Adam J. Stewart
726dee9e2d
py-scipy: add v1.10.0 (#34799)
* py-scipy: add v1.10.0

* Update GCC/LAPACK version requirements

* Fix msvc version check
2023-01-10 11:43:55 +01:00
Stephen Sachs
b5a5af8c05
[adios2] Older versions of ifx (oneapi) fail compilation (#34819)
See https://community.intel.com/t5/Intel-Fortran-Compiler/version-node-not-found-for-symbol/m-p/1443784/thread-id/164290

Fixes https://github.com/spack/spack/issues/31817

Co-authored-by: Stephen Sachs <stesachs@amazon.com>
2023-01-10 11:39:42 +01:00
Sebastian Ehlert
289d6df911
Update mongo-cxx-driver (#34843) 2023-01-10 11:38:23 +01:00
dependabot[bot]
6158e4d8aa
build(deps): bump actions/upload-artifact from 3.1.1 to 3.1.2 (#34848)
Bumps [actions/upload-artifact](https://github.com/actions/upload-artifact) from 3.1.1 to 3.1.2.
- [Release notes](https://github.com/actions/upload-artifact/releases)
- [Commits](83fd05a356...0b7f8abb15)

---
updated-dependencies:
- dependency-name: actions/upload-artifact
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <support@github.com>

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2023-01-10 11:23:13 +01:00
Mosè Giordano
8c3c8a4e4d
libxsmm: Add build dependency on binutils (#34863) 2023-01-10 11:22:01 +01:00
Erik Schnetter
954e241174
pgplot: Correct building shared libraries (#34846) 2023-01-10 11:20:30 +01:00
Erik Schnetter
ae3a1618a2
simulationio: Explicitly enable/disable support for dependent packages (#34803)
* simulationio: Explicitly enable/disable support for dependent packages

* simulationio: Remove unused local variable
2023-01-10 11:18:39 +01:00
Sreenivasa Murthy Kolam
0d96b0b311
rocm packages: Update the version for 5.3.0 release (#33405)
* update the version for 5.3.0 release
* update the rocwmma for 5.3.0 release
* fix the +hip variant
* update the version for rocm-openmp-extras package for 5.3.0 release
* update the hipsolver and hipfft as per review comments
* address review comments
* revert changes to mivisionx with regard to change added for clangrt
* fix for the petsc failure
2023-01-09 18:50:00 -08:00
Erik Schnetter
f96f8a99e8
mpiwrapper: New version 2.10.1 (#34850) 2023-01-09 18:02:45 -08:00
Adam J. Stewart
94cff84df1
py-black: add v22.12.0 (#34429) 2023-01-09 19:31:47 -06:00
Rémi Lacroix
582ee111f6
MAFFT: Add latest version 7.505 (#34855) 2023-01-09 16:09:13 -08:00
Rémi Lacroix
c55de3f5e0
pv: Add version 1.6.20 (#34854) 2023-01-09 15:07:36 -08:00
renjithravindrankannath
0bdd4c10cf
RVS 5.1.0 and later works with googletest shared variant (#34802) 2023-01-09 14:41:40 -08:00
John Parent
521cc41db0 Remove Spack external find from startup
Spack was running an external detection of Python during each invocation
of the setup script for Windows CMD/PWSH, which has dramatic performance
implications each time the script is invoked, and is completely
unneccesary. Remove this operation.
2023-01-09 09:14:17 -08:00
John Parent
c0eb2cf9e6 Update haspywin
Inform user Spack is installing pyWin32 module behind the scenes.
This is neccesary for Windows support.
2023-01-09 09:14:17 -08:00
John Parent
9f0bb4301f Support ASCI control
Windows CMD prompt does not automatically support ASCI color control
characters on the console from Python. Enable this behavior by
accessing the current console and allowing the interpreation of ASCI
control characters from Python via the win32 API.
2023-01-09 09:14:17 -08:00
Stephen Sachs
288e728144
openfoam: OneAPI is only supported from 2106 onwards (#34797)
Also, adios2 fortran bindings are not necessary. This circumvents
https://github.com/spack/spack/issues/31817

Co-authored-by: Stephen Sachs <stesachs@amazon.com>
2023-01-09 12:19:23 +01:00
Harmen Stoppels
47011f594f
Revert "Allow spec.json files to be clearsigned, use transparent compression for *.json (#34490)" (#34856)
This reverts commit 8a1b817978.
2023-01-09 10:52:07 +01:00
Marco De La Pierre
a00f692f20
adding 3rd bunch of nf-core deps from update/nextflow-tools (#34563)
* adding 2nd bunch of nf-core deps from update/nextflow-tools

* adding 3rd bunch of nf-core deps from update/nextflow-tools

* Update var/spack/repos/builtin/packages/py-dnspython/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/py-dnspython/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/py-dnspython/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/py-fastapi-utils/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/py-pastedeploy/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/py-pebble/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/py-fastapi/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/py-fastapi/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/py-gunicorn/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/py-starlette/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/py-starlette/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/py-starlette/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/py-parsley/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/py-paste/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/py-paste/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* py-gxformat2: added comment

* py-lagom: now using github tarballs

* fix for py-lagom

* adding missing deps to py-fastapi-utils

* another fix to py-lagom

* Update var/spack/repos/builtin/packages/py-dnspython/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/py-fastapi-utils/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/py-fastapi-utils/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/py-fastapi-utils/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/py-lagom/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/py-supervisor/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-01-08 20:06:59 -08:00
Adam J. Stewart
68bffd4689
GDAL: add v3.6.2 (#34823) 2023-01-07 13:57:18 +01:00
Wouter Deconinck
5acb20f145
acts: new version 22.0.0 (#34826)
No build system changes.
2023-01-07 13:56:37 +01:00
Harmen Stoppels
8a1b817978
Allow spec.json files to be clearsigned, use transparent compression for *.json (#34490)
This commit allows (remote) spec.json files to be clearsigned and gzipped.

The idea is to reduce the number of requests and number of bytes transferred
2023-01-07 12:22:40 +01:00
Marco De La Pierre
86e346e906
Adding recipes for py-qutip and py-qutip-qip (#34835)
* added recipes for py-qutip and py-qutip-qip

* small fix

* updated qutip 2x versions

* py-qutip-qip: tarball url from github

* style fix in py-qutip-qip

* Update var/spack/repos/builtin/packages/py-qutip-qip/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/py-qutip-qip/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/py-qutip-qip/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/py-qutip/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/py-qutip/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-01-06 17:22:03 -08:00
Marco De La Pierre
a5ef522f98
Adding py-pennylane from Xanadu (#34838)
* draft for py-pennylane recipe

* first draft for py-strawberryfields recipe

* minimal fix

* small fixes

* accounting for circular dep in py-pennylane and py-pennylane-lightning

* removing py-strawberryfields from this branch

* updated versions for py-pennylane 2x

* needs cmake

* py-pennylane-lightning using github tarball

* Update var/spack/repos/builtin/packages/py-autoray/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/py-pennylane-lightning/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-01-06 16:02:06 -08:00
Verinder Rana
800ac7b53d
kripke: add cuda and rocm support (#34257) 2023-01-06 15:57:00 -08:00
Luke Diorio-Toth
691e8c69c4
py-instrain and py-drep: new version and added maintainer (#34581) 2023-01-06 13:26:19 -06:00
QuellynSnead
ea970c8ab8
Fix PrgEnv detection (#34845)
* Fix PrgEnv detection for Cray compiler link paths
2023-01-06 18:11:43 +00:00
Erik Schnetter
c05827e794
mpiwrapper: New version 2.10.0 (#34795) 2023-01-06 15:46:04 +01:00
Erik Schnetter
910b13000f
cni-plugins: New version 1.1.1 (#34809) 2023-01-06 15:45:25 +01:00