Commit graph

29072 commits

Author SHA1 Message Date
Erik Schnetter
9474fdf910
conmon: New version 2.1.5 (#34810) 2023-01-06 15:44:55 +01:00
Erik Schnetter
2cdac9392f
go-md2man: New version 2.0.2 (#34811) 2023-01-06 15:44:35 +01:00
Erik Schnetter
6775c10e82
go: New version 1.19.4 (#34812) 2023-01-06 15:44:12 +01:00
Erik Schnetter
ea5d5517ce
libseccomp: New version 2.5.4 (#34814) 2023-01-06 15:43:48 +01:00
Erik Schnetter
8780c718ea
slirp4netns: New version 1.2.0 (#34816) 2023-01-06 15:07:22 +01:00
Erik Schnetter
9687491568
podman: New version 4.3.1 (#34817) 2023-01-06 15:06:36 +01:00
Erik Schnetter
9c56b97aa9
mpitrampoline: New version 5.2.0 (#34796) 2023-01-06 15:04:59 +01:00
Auriane R
df10e711f7
Fix the version number for the fmt dep of pika package (#34839)
* Fix the version number for the fmt dep of pika package

* Add version constraint for fmt standard specification
2023-01-06 14:59:23 +01:00
Harmen Stoppels
6fdb5dfa0a
cabana: version ranges (#34794)
Co-authored-by: Sam Reeve <6740307+streeve@users.noreply.github.com>
2023-01-05 19:21:57 +01:00
Stephen Sachs
ada174afbd
cmake fails with icpc warning (#34774)
The Intel compiler isn't able to deal with noinline member functions of template classses defined in headers. As such it outputs
```
warning #2196: routine is both "inline" and "noinline"
```
cmake bootstrap will fail due to the word 'warning'.

See spack/var/spack/repos/builtin/packages/protobuf/intel-v2.patch for reference.

The issue does not appear with intel@2021.7.0 or later:

```
$~: compiler=/shared/spack/opt/spack/linux-amzn2-x86_64_v3/gcc-12.2.0/intel-oneapi-compilers-2022.2.0-uqvb2553zy5toeapvoopacndd27x6p5m/compiler/2022.2.0/linux/bin/intel64/icpc
$~: $compiler unique.c
icpc: remark #10441: The Intel(R) C++ Compiler Classic (ICC) is deprecated and will be removed from product release in the second half of 2023. The Intel(R) oneAPI DPC++/C++ Compiler (ICX) is the recommended compiler moving forward. Please transition to use this compiler. Use '-diag-disable=10441' to disable this message.
```

This is a clean version of https://github.com/spack/spack/pull/34167

Co-authored-by: Stephen Sachs <stesachs@amazon.com>
2023-01-05 18:13:26 +01:00
Massimiliano Culpo
eace2ebb08
spack.dependency: add type hints (#34807) 2023-01-05 17:48:29 +01:00
Brent Huisman
441c0a4fee
Typo in arbor/package.py: incorrect version (#34820) 2023-01-05 13:55:31 +01:00
Sinan
0a7b0c68cf
package/libproxy: fix py3 install (#34431)
* package/libproxy: fix py3 install

* improve readability

* fix bug

* also add extend

* make flake happy

* [@spackbot] updating style on behalf of Sinan81

* Update var/spack/repos/builtin/packages/libproxy/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* python dependency implied by extends const.

* disable python variant by default

* add run_env, add py conflict

* Update var/spack/repos/builtin/packages/libproxy/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* set env for macos as well

* generalize lib dir detection

Co-authored-by: sbulut <sbulut@3vgeomatics.com>
Co-authored-by: Sinan81 <Sinan81@users.noreply.github.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-01-04 15:01:13 -06:00
Massimiliano Culpo
6a44a146af Fix building docs 2023-01-04 09:43:04 -08:00
Massimiliano Culpo
033cb86fd6 Add vendored packages back 2023-01-04 09:43:04 -08:00
Massimiliano Culpo
5175189412 Delete outdated externals 2023-01-04 09:43:04 -08:00
Massimiliano Culpo
86378502f9 Use "vendoring" to manage 3rd party dependencies 2023-01-04 09:43:04 -08:00
Sinan
2530c7828b
add_new_package: py-file-magic (#34486)
* add_new_package: py-file-magic

* re-order depends...

* Update var/spack/repos/builtin/packages/py-file-magic/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* [@spackbot] updating style on behalf of Sinan81

Co-authored-by: sbulut <sbulut@3vgeomatics.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
Co-authored-by: Sinan81 <Sinan81@users.noreply.github.com>
2023-01-04 11:08:58 -06:00
Erik Heeren
ab2f842424
Add py-svgpath and py-trimesh (#34471)
* Add py-svgpath and dependency

* Update copyright expiration

* [@spackbot] updating style on behalf of heerener

* Process review remarks

* Update var/spack/repos/builtin/packages/py-trimesh/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Fix style issue

* py-trimesh: cleanup and optional dependencies

* Fix formatting issue

* py-trimesh: complete dependency list for easy variant

Two new packages: py-mapbox-earcut and py-pycollada

* Some more missing dependencies

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-01-04 11:00:00 -06:00
Harmen Stoppels
b9f48da560
e4s: move default values for rocm/cuda arch into packags:all:variants (#34772) 2023-01-04 16:09:14 +01:00
Harmen Stoppels
e21c1c5770
set PREFIX in make() for some packages (#34773) 2023-01-04 15:08:15 +01:00
Massimiliano Culpo
310b6b9466
Remove dead code that was needed for the old parser (#34792)
The old to token definitions and spec_id_re regular
expression are not used anymore
2023-01-04 05:47:21 -08:00
Alberto Invernizzi
a869cfd95d
Fix libvterm and libtermkey packages (#34776)
* fix PREFIX for both libvterm and libtermkey

* minor: use libtool from dependency

* switch to command-line prefix instead of replacing it in Makefile
2023-01-04 10:27:21 +01:00
Glenn Johnson
ddab6c4ac3
new package: py-kb-python + dependencies (#34737)
* new package: py-kb-python + dependencies

- py-loompy
- py-ngs-tools
- py-numpy-groupies

* Update var/spack/repos/builtin/packages/py-kb-python/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-01-03 16:35:43 -06:00
Glenn Johnson
25cff6be14
py-shortuuid: add version 1.0.11 (#34739)
* py-shortuuid: add version 1.0.11

* Update var/spack/repos/builtin/packages/py-shortuuid/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-01-03 16:35:13 -06:00
kwryankrattiger
5fe1281b14
LLVM: Update HWLOC dep version (#34780) 2023-01-03 12:42:49 -08:00
Sebastian Grabowski
43cf60814d
jube: Add versions 2.5.0 and 2.5.1 (#34783)
* jube: Add 2.5.0 and 2.5.1

* jube: Depend on py-pyyaml
2023-01-03 12:17:32 -08:00
John W. Parent
582f165871
Windows: package defaults and MPI detection (#34614)
* Update packages config to indicate that MSVC is the preferred compiler
* Update packages config to indicate that msmpi is the preferred MPI provider
* Fix msmpi external detection
2023-01-03 08:32:18 -08:00
Harmen Stoppels
bf76f1e774
scr: require spath+mpi (#34775)
It includes `spath_mpi.h` explicitly, and in some concretizations
results in a build failure. (Don't ask me why the concretizer picks
`spath~mpi`).
2023-01-03 09:53:48 -06:00
Harmen Stoppels
9cdb862856
gmake: 4.4, remove alpha release (#34709) 2023-01-02 14:07:24 -08:00
Harmen Stoppels
2e8d165120
environment view use new traversal (#34662) 2023-01-02 19:04:55 +01:00
Christoph Junghans
6984ee291a
votca: add v2022.1 (#34650) 2023-01-02 19:02:59 +01:00
Wouter Deconinck
10d506d61b
pixman: new versions 0.42.0, 0.42.2 (#34723)
This fixes, [among other things](https://lists.freedesktop.org/archives/pixman/2022-October/004993.html),
a [bug](https://issuetracker.google.com/issues/249834910) in 0.40.0 that
prevents building with oneapi.
2023-01-02 18:58:41 +01:00
Adam J. Stewart
4549312c5e
py-sphinx: add v6.0.0 (#34724) 2023-01-02 18:57:49 +01:00
Glenn Johnson
80761bdc9d
libxau: add libs property (#34288) 2023-01-02 18:47:18 +01:00
Glenn Johnson
4eb853856a
r-affyio: add zlib dependency (#34743) 2023-01-02 18:33:27 +01:00
Glenn Johnson
790929c832
r-cairo: add needed dependency on libxt (#34744) 2023-01-02 18:33:15 +01:00
Glenn Johnson
769378c959
r-hdf5array: add needed dependency on zlib (#34745) 2023-01-02 18:32:59 +01:00
Glenn Johnson
a18e2f98b3
r-rhdf5: add needed zlib dependency (#34746) 2023-01-02 18:32:44 +01:00
Glenn Johnson
8f3bdf29dc
r-rhdf5filters: add needed zlib dependency (#34747) 2023-01-02 18:32:31 +01:00
Glenn Johnson
a28bb90b93
r-rhdf5lib: add needed zlib dependency (#34748) 2023-01-02 18:32:17 +01:00
Glenn Johnson
5c9b591439
r-rjava: add needed zlib dependency (#34749) 2023-01-02 18:31:56 +01:00
Glenn Johnson
778325db42
r-rtracklayer: add zlib and openssl dependencies (#34750) 2023-01-02 18:31:37 +01:00
Glenn Johnson
f65bb62de4
r-signac: added needed zlib dependency (#34751) 2023-01-02 18:31:22 +01:00
Glenn Johnson
e4881d5465
bcftools: add version 1.15.1 (#34752) 2023-01-02 18:31:08 +01:00
Glenn Johnson
31cccdf52b
genrich: add needed zlib dependency (#34753) 2023-01-02 18:29:23 +01:00
Glenn Johnson
2c1523debe
mumax: Set NVCC_CCBIN to spack compiler wrapper (#34754) 2023-01-02 18:28:45 +01:00
Glenn Johnson
c07881c843
openscenegraph: add dependency on fontconfig (#34755) 2023-01-02 18:28:28 +01:00
Glenn Johnson
cb807594b8
rsl: add needed dependency on rpc (#34756) 2023-01-02 18:28:10 +01:00
Michael Kuhn
0227c0a98a
miniconda3: add 22.11.1 (#34761) 2023-01-02 18:22:45 +01:00