4375 commits

Author	SHA1	Message	Date
George Hartzell	e0db1f0268	Add package for exonerate	2016-08-06 16:27:40 -04:00
George Hartzell	9e16902397	Fix name of bpp-suite (missing -...)	2016-08-06 16:27:40 -04:00
George Hartzell	63592096c5	Add package for prank	2016-08-06 16:27:40 -04:00
Denis Davydov	4983ebcf7c	opium: add new package	2016-08-06 21:35:52 +02:00
becker33	d3f115933e	Merge pull request #1451 from hartzell/feature/add-package-for-fastx_toolkit ... Add package for fastx toolkit	2016-08-05 15:09:46 -07:00
becker33	18d155e713	Merge pull request #1452 from hartzell/feature/add-package-for-samtools ... Add package for samtools	2016-08-05 15:09:41 -07:00
George Hartzell	a6afaeb974	Remove lingering FIXME commentary	2016-08-05 17:51:24 -04:00
George Hartzell	769408130a	Samtools depends on htslib from 1.3.1 onward ... Samtools used to (before 1.3.1) include it's own copy of htslib. Going forward, it needs to use the standalone htslib.	2016-08-05 17:47:11 -04:00
becker33	8e20a14945	Merge pull request #1453 from hartzell/feature/add-package-for-seqtk ... Add package for seqtk	2016-08-05 10:25:19 -07:00
becker33	f403f256ca	Merge pull request #1450 from hartzell/feature/add-package-for-bwa ... Add package for bwa	2016-08-05 10:21:10 -07:00
becker33	594a6710ed	Merge pull request #1442 from suraia/update-scorep-2.0 ... Update Score-P to 2.0 Most likely this can be generalized to link against older versions of dependencies, but it looks good for now.	2016-08-05 08:57:25 -07:00
George Hartzell	d6dedee6ff	Flake8 cleanup	2016-08-04 15:23:04 -04:00
Bruno Turcksin	0c02ee86a7	Add Trilinos 12.6.4 (#1447)	2016-08-04 11:29:10 -07:00
George Hartzell	e12d7aadda	Add package for seqtk ... Seqtk is a tool for working with fast[aq] files.	2016-08-04 14:18:03 -04:00
George Hartzell	fd11db92e1	Add package for bcftools	2016-08-04 14:18:03 -04:00
George Hartzell	ba0577dc96	Update samtools to support v1.3.1 ... Update the samtools package to support v1.3.1, which - now uses configure script; and - now depends on external htslib package. The dependency on mpc seems to have been bogus, it's never linked in, nor is it mentioned in the source tree. I *do* have a version in /usr/lib64, but ldd does not sure it being linked in either.... By depending on 'ncurses' I can do away with the need for the patch.	2016-08-04 14:18:03 -04:00
George Hartzell	ef1369c365	Add package for htslib ... Htslib was pulled out of samtools and made into a standalone thing. This commit adds a packag for it, in support of the samtools package.	2016-08-04 14:18:03 -04:00
George Hartzell	e17862c421	Add package for fastx toolkit ... Tools for working with FASTA/FASTQ files.	2016-08-04 14:18:02 -04:00
George Hartzell	d5bb2955b1	Add package for libgtextutils ... Gordon's Text utils Library, in support of fastx toolkit.	2016-08-04 14:18:02 -04:00
George Hartzell	d4274b32f2	Make flake8 happy (long lines)	2016-08-04 14:18:01 -04:00
Michael Kuhn	d7665a63e3	flake8 fixes	2016-08-04 19:04:48 +02:00
becker33	1ac1cc3d2c	Merge pull request #1437 from jgalarowicz/update-xercesc ... Update the version of xerces-c, where the developers remove the old v…	2016-08-04 09:00:36 -07:00
becker33	3c6f6fc811	Merge pull request #1438 from jgalarowicz/update-libmonitor ... Update libmonitor to use its new github location, it does not exist w…	2016-08-04 08:59:35 -07:00
becker33	cabcdf0ec9	Merge pull request #1443 from davydden/pkg/dealii_python ... dealii: add optional python bindings	2016-08-04 08:43:36 -07:00
becker33	fcc8b1d3e4	Merge pull request #1431 from hartzell/feature/add-package-for-unison ... Add package for unison (and ocaml)	2016-08-04 08:41:45 -07:00
Denis Davydov	af8741c23c	dealii: add optional python bindings	2016-08-04 16:11:14 +02:00
Michael Kuhn	584e5506f2	Update Score-P to 2.0	2016-08-04 14:24:25 +02:00
Todd Gamblin	b7fa2c4e21	Fix #1429: Remove git dep from gettext; break circular dependency. ... - It's not really a circular dependency -- git is a run dependency of gettext - We can revert this change when Spack is smart enough to make git a run dependency and build it.	2016-08-03 21:53:53 -07:00
Jim Galarowicz	2e1dbd0697	Fix flake8 errors for: Update libmonitor to use its new github location, it does not exist where the package file now points to.	2016-08-03 21:32:15 -05:00
Jim Galarowicz	e69423a154	Fix flake8 errors for Update the version of xerces-c, where the developers remove the old version, so there is no fallback.	2016-08-03 21:28:56 -05:00
Jim Galarowicz	e68b7d8c63	Update libmonitor to use its new github location, it does not exist where the package file now points to.	2016-08-03 21:08:48 -05:00
Jim Galarowicz	638f779841	Update the version of xerces-c, where the developers remove the old version, so there is no fallback.	2016-08-03 21:04:17 -05:00
George Hartzell	43371c31a2	Flake8 cleanup	2016-08-03 16:51:53 -04:00
Todd Gamblin	dce105d16f	Merge pull request #1382 from KineticTheory/gktplus3-deps ... GTK+3: Provide updates to package dependencies.	2016-08-03 13:45:18 -07:00
George Hartzell	4acf6d76bf	Add package for unison ... Add package for unison (the file synchronizer). Needs the ocaml compiler to build.	2016-08-03 16:41:31 -04:00
George Hartzell	a7bfaa3797	Add package for ocaml compiler ... Installs the ocaml compiler.	2016-08-03 16:41:31 -04:00
Kelly (KT) Thompson	7c46a4c0e4	Provide minor updates after code review ... + Always depend on the gettext package. This simplifies the logic and I no longer need to 'import sys' + Only apply the patch for the older version of glib.	2016-08-03 13:26:02 -06:00
becker33	3e6ebd577f	Merge pull request #1378 from LLNL/bugfix/gh-1324-intel-parallel-studio ... Bugfix/gh 1324 intel parallel studio	2016-08-03 10:46:40 -07:00
becker33	353726f08f	Merge pull request #1156 from adamjstewart/features/py-meep ... Add py-meep package and dependencies Merging to add the gettext support, will submit a separate issue for the LD_LIBRARY_PATH issue with MPI and py-meep	2016-08-03 10:07:05 -07:00
becker33	b9195b415a	Merge pull request #1420 from epfl-scitas/packages/plumed ... plumed : added package	2016-08-03 08:36:31 -07:00
alalazo	2f1c000f62	qa : flake8 issues	2016-08-03 08:26:58 +02:00
Kelly (KT) Thompson	d7d12aa2dc	One more formatting change to make flake8 happy.	2016-08-02 19:05:48 -06:00
becker33	48997cffa1	Merge pull request #1233 from hartzell/add-nextflow ... First cut package for nextflow, has issues	2016-08-02 11:52:19 -07:00
Denis Davydov	f90692cf81	arpack-ng: fix blas/lapack libraries	2016-08-02 20:27:34 +02:00
becker33	b5a117c923	Merge pull request #1366 from hartzell/feature/add-package-for-ack ... Add package for ack	2016-08-02 10:11:11 -07:00
becker33	1534a115bd	Merge pull request #1421 from hartzell/feature/add-package-for-texlive ... Add package for texlive	2016-08-02 10:10:43 -07:00
becker33	a03a35565e	Merge pull request #1339 from hartzell/features/add-perl ... Add perl package	2016-08-02 10:10:04 -07:00
George Hartzell	fa70a837d4	Remove accidentally committed cabal-install bits	2016-08-02 13:00:47 -04:00
becker33	91004158c6	Merge pull request #1243 from davydden/pkg/atlas_urls ... atlas: fix urls and shared libs	2016-08-02 09:59:05 -07:00
becker33	3f26bbc8b3	Merge pull request #864 from davydden/kdiff3 ... kdiff3: initial version of the package	2016-08-02 09:35:00 -07:00
becker33	a3322fab0a	Merge pull request #1360 from glennpj/pysetuptoolsdep ... Add py-setuptools dependencies to packages	2016-08-02 09:33:40 -07:00
becker33	21158195fb	Merge pull request #1354 from paulhopkins/bugfix/preferred_variants_do_not_recognise_-variant ... Bugfix/preferred variants do not recognise -variant	2016-08-02 09:15:06 -07:00
George Hartzell	74a181febc	Remove local copy of cpanm installer ... This is handled as a resource in the package now.	2016-08-02 12:13:24 -04:00
George Hartzell	4c8672ed1f	Add previous versions back into package ... Following the advice of @glennpj, added the old versions back into the packages. I can install the current packages and the previous packages.	2016-08-02 11:45:16 -04:00
George Hartzell	c77425bb22	Remove useless def unpack ... Before I learned that I was stumbling over a real but (#1308), I thought I needed to arrange for the fetcher to skip the unpack step. This commit removes the useful `def unpack`.	2016-08-02 11:32:19 -04:00
George Hartzell	a6605d842b	Flake8 cleanup.	2016-08-02 11:25:03 -04:00
George Hartzell	f2f5f6c279	Touch up variant comment	2016-08-02 11:18:50 -04:00
George Hartzell	c994565c62	Use "resource" machinery to manage cpanm tarball ... Use the resource machinery to fetch/cache/unpack/... the App::cpanminus tarball. - this hardcodes the version, I can't figure out how to use a variant to hold/set the value and access it in the resource(). - change up the install to use the `with working_dir()` meme.	2016-08-02 11:16:46 -04:00
George Hartzell	1b9becc541	Add the std spack header to perl/package.py ... Stole the example header from antlr/package.py, included it at the top of perl/package.py.	2016-08-02 11:16:46 -04:00
George Hartzell	08ff7b65af	Make running perl's tests conditional ... Make running perl's tests conditional, one must now specify the `--run-tests` flag to the `spack install` command in order to run the tests. On one system (8 core, 16GB Digital Ocean Droplet), installing without tests takes 3 minutes, with tests takes 16 minutes.	2016-08-02 11:16:46 -04:00
George Hartzell	4d72e0fb9d	Make the cpanm version a variant ... Rather than hard-coding the verison of `cpanm` that's [optionally] installed into the core, make it a variant with a default value of '1.7042'. Also discovered that `prefix + 'bin'` is the same as `prefix.bin`, so embetter that bit of code.	2016-08-02 11:16:46 -04:00
George Hartzell	a5a4525bed	Add perl package ... Add perl package, based on [work by justintoo](https://github.com/LLNL/spack/pull/105). He had too many things pulled into that pull request, this just adds a perl package. Support the current releases on the past three minor branches. Run perl's tests before installing. Install cpanm into the core (makes building on top of this perl *much* simpler). Controlled by a variant.	2016-08-02 11:16:46 -04:00
George Hartzell	949621eb7f	Add package for texlive	2016-08-02 11:15:42 -04:00
George Hartzell	857a03c127	Ack should depends_on('perl') ... Add a depends_on('perl') and rewrite the script's `#!` line to refer to that Perl's `perl` executable.	2016-08-02 11:11:05 -04:00
George Hartzell	114da813a3	Remove unnecessary imports. ... Now that it's sporting a cleaner install method, these imports are unnecessary.	2016-08-02 11:11:05 -04:00
George Hartzell	bf467c5df3	Remove override of unpack(self) ... I cargo culted that from my *nextflow* package. I [thought I] needed it to work around Spack trying to use tar to unpack something that was neither a tar ball nor unpackable. This package works fine without it. In retrospect, the error that I was seeing in the *nextflow* package was probably this problem #1308.	2016-08-02 11:11:05 -04:00
George Hartzell	6c3623422f	Use cleaner mech to install script ... Use @adamjstewart's nicer bit of python code in the install method.	2016-08-02 11:11:05 -04:00
George Hartzell	63121a0c49	Add package for ack ... Add a package for [ack](http://beyondgrep.com/install/). Simply install the fatpacked script. It uses '#!/usr/bin/env perl' and it very much not choosy about what perl it needs. For now just trust that there's one available, perhaps someday we can/should uncomment the depends_on('perl'). Follows the methodolgy I used in nextflow. Has the same uninstall/install problem that nextflow has, there is an issue in progress for that: https://github.com/LLNL/spack/issues/1308. Tested on CentOS7.	2016-08-02 11:11:05 -04:00
George Hartzell	12d1263980	Update several R packages (r-shiny prereqs) ... r-jsonlite 0.0.21 -> 1.0 r-mime 0.4 -> 0.5 rcpp 0.12.5 -> 0.12.6 CRAN is funny. The older versions of these packages are still available in package specific directories but the current version is not there, so I don't see any way to make the older versions work.	2016-08-02 11:10:41 -04:00
George Hartzell	6f332c7e4c	Fix whitespace, make flake8 happ{y,ier}.	2016-08-02 11:10:12 -04:00
George Hartzell	bfcec69630	Add standard header, use spack helpers ... Added the standard header (stolen from R). Touched up the install to use set_executable rather than doing it myself.	2016-08-02 11:10:12 -04:00
George Hartzell	4373a2b629	First cut package for nextflow, has issues ... This is my first cut at a package to support nextflow. It's also my first package. It works, but has issues. I'm going to submit a pull request and get some coaching on how to deal with it. One issue particular: if I install, then uninstall, then try to install again (which uses the cached copy of the "distribution file"), it explodes.	2016-08-02 11:10:12 -04:00
Glenn Johnson	a57d94af03	Fix flake8 issues.	2016-08-02 09:53:57 -05:00
Denis Davydov	a1703bf70d	kdiff3: add license block	2016-08-02 16:37:14 +02:00
Gilles Fourestey	dea7bbb4a0	added plumed ... * plumed : first version * plumed : added dependencies and docs	2016-08-02 15:06:46 +02:00
Denis Davydov	565bd5f51e	atlas: revert to lapack 3.5.0	2016-08-02 13:52:32 +02:00
Denis Davydov	bef7e2645a	atlas: flake8 fixes	2016-08-02 13:52:32 +02:00
Denis Davydov	f6a4a6b00f	atlas: add install_test	2016-08-02 13:52:32 +02:00
Denis Davydov	0c0b37800d	atlas: set (blas|lapack)_shared_lib	2016-08-02 13:52:32 +02:00
Denis Davydov	4ecf481337	atlas: fix shared libs; set compilers	2016-08-02 13:52:32 +02:00
Denis Davydov	6f7e12d49b	atlas: fix urls and use lapack 3.6.0	2016-08-02 13:52:32 +02:00
Denis Davydov	0aa513ad70	libxau: mark pkg-config as build-type dependency	2016-08-02 13:50:46 +02:00
Denis Davydov	450c750214	kdiff3: initial version of the package	2016-08-02 13:49:40 +02:00
Denis Davydov	a4e59c2758	libxau: add missing dependency	2016-08-02 13:49:40 +02:00
Kelly (KT) Thompson	9433e84776	Formatting changes for flake8.	2016-08-01 22:54:51 -06:00
Kelly (KT) Thompson	17f0eb5148	Provide correct download urls and additional dependencies.	2016-08-01 22:10:54 -06:00
	ba11f19efc	Merge remote-tracking branch 'upstream/develop' into gktplus3-deps	2016-08-01 20:50:28 -06:00
becker33	b892cebe8a	Merge pull request #1343 from glennpj/r_unfilter ... R extension dependencies with compiler wrapper	2016-08-01 13:51:13 -07:00
becker33	e861e35acf	Merge pull request #1234 from mwilliammyers/package-opencv ... Update opencv package	2016-08-01 13:44:31 -07:00
becker33	1847aa035d	Merge pull request #1348 from glennpj/rcurl ... r-curl update and changed remote archive	2016-08-01 13:38:38 -07:00
becker33	94238eebfa	Merge pull request #1381 from davydden/pkg/mkl_linux ... MKL linux fixes	2016-08-01 13:36:10 -07:00
becker33	dc9fcea989	Merge pull request #1365 from hartzell/feature/add-package-for-tree ... Add package for tree	2016-08-01 13:21:09 -07:00
becker33	15514792d5	Merge pull request #1374 from hartzell/bug/fix-jdk-import-of-distutils ... Bug: fix jdk package's use of distutils	2016-08-01 13:20:44 -07:00
becker33	851bc506e4	Merge pull request #1367 from adamjstewart/features/pgi ... Add latest version of PGI	2016-08-01 13:07:35 -07:00
becker33	932300256c	Merge pull request #1413 from mdevlin1/fixes/libxsmm ... Fixed libxsmm package	2016-08-01 13:06:05 -07:00
becker33	6361f5c2d4	Merge pull request #1359 from sknigh/libhio ... added libhio package	2016-08-01 13:05:29 -07:00
Mitchell Devlin	2d51ea5da4	fixed libxsmm makefile filter	2016-08-01 14:38:16 -05:00
Adam J. Stewart	fed7ba1dab	Add latest version of PGI	2016-08-01 13:42:00 -05:00
Adam J. Stewart	ab885a5397	Allow git to depend on gettext now that it works	2016-08-01 13:35:22 -05:00
Adam J. Stewart	4014a29d2b	Use proper deptype so that spack activate works	2016-08-01 13:35:22 -05:00
Adam J. Stewart	f5aed63b0b	pkg-config should be a build dependency only	2016-08-01 13:35:22 -05:00
Adam J. Stewart	5cac0a528c	Fix undefined symbols by building shared libraries	2016-08-01 13:35:22 -05:00
Adam J. Stewart	bdb64c2e39	Tell MEEP where to find libctl	2016-08-01 13:35:22 -05:00
Adam J. Stewart	0903ae0599	Final fixes to get libctl working	2016-08-01 13:35:22 -05:00
Adam J. Stewart	1e3a5d4e26	Final fixes to get guile to build	2016-08-01 13:35:21 -05:00
Adam J. Stewart	6db99a4fe7	Rename gc => bdw-gc, fix libunistring bug	2016-08-01 13:35:21 -05:00
Adam J. Stewart	5b1a882fc2	Update meep's url_for_version	2016-08-01 13:35:21 -05:00
Adam J. Stewart	a2578c21e4	Supply flags to bdist	2016-08-01 13:35:21 -05:00
Adam J. Stewart	8d0758fc4c	Allow py-meep to link properly	2016-08-01 13:35:21 -05:00
Adam J. Stewart	880cbb2217	Better testing for MEEP	2016-08-01 13:35:21 -05:00
Adam J. Stewart	3b4820f290	Patch pkg-config and update installs for various packages	2016-08-01 13:35:21 -05:00
Adam J. Stewart	9e05fdf4a1	Bug fixes	2016-08-01 13:35:20 -05:00
Adam J. Stewart	7e53f4328f	Add py-meep package and dependencies	2016-08-01 13:35:20 -05:00
George Hartzell	7d303afd64	Address flake8 issue	2016-08-01 13:42:55 -04:00
George Hartzell	1552ed943a	Add package for cask ... Add a package for cask, the emacs project/dependency management tool. Based on [Homebrew's formula][brew]. [brew]: https://github.com/Homebrew/homebrew-core/blob/master/Formula/cask.rb	2016-08-01 13:41:28 -04:00
George Hartzell	31b7580b76	Fix jdk package's use of distutils ... See issue #1364. @citibeth's fix works fine.	2016-08-01 13:33:27 -04:00
becker33	cc3fc2ba4c	Merge pull request #1322 from mdevlin1/feature/libxsmm ... Add libxsmm package	2016-08-01 09:56:09 -07:00
Paul Hopkins	cca240c8f9	Add concretize_preferences tests	2016-08-01 16:18:11 +01:00
alalazo	ec09dfe5d1	cp2k : added package	2016-08-01 10:41:33 +02:00
Todd Gamblin	fbbb82259a	Merge pull request #1407 from glennpj/r-ncdf4 ... New package - r-ncdf4	2016-07-31 22:15:52 -07:00
Todd Gamblin	ea11aab71f	Merge pull request #1406 from glennpj/r-np ... New package - r-np	2016-07-31 22:15:37 -07:00
Todd Gamblin	2042c94a6c	Merge pull request #1405 from glennpj/r-survey ... New package - r-survey	2016-07-31 22:15:09 -07:00
Todd Gamblin	64be8a80b2	Merge pull request #1404 from glennpj/r-tarifx ... New package - r-tarifx	2016-07-31 22:14:56 -07:00
Todd Gamblin	7185fe2876	Merge pull request #1403 from glennpj/r-e1071 ... New package - r-e1071	2016-07-31 22:14:40 -07:00
Todd Gamblin	0724eba935	Merge pull request #1402 from glennpj/r-plotrix ... New package - r-plotrix	2016-07-31 22:14:25 -07:00
Todd Gamblin	441bb83682	Merge pull request #1401 from glennpj/r-gdata ... New package - r-gdata	2016-07-31 22:13:50 -07:00
Todd Gamblin	2cffc90284	Merge pull request #1400 from glennpj/r-roxygen2 ... New package - r-roxygen2	2016-07-31 22:13:16 -07:00
Todd Gamblin	68cedd2599	Merge pull request #1399 from glennpj/r-testthat ... New package - r-testthat	2016-07-31 22:12:06 -07:00
Todd Gamblin	d00fd06095	Merge pull request #1398 from glennpj/r-xml ... New package - r-xml	2016-07-31 22:11:38 -07:00
Glenn Johnson	8815f0a0b5	New package - r-ncdf4 ... Interface to Unidata netCDF (version 4 or earlier) format data files.	2016-07-31 17:12:29 -05:00
Glenn Johnson	bfd03db12a	New package - r-np ... Nonparametric kernel smoothing methods for mixed data types.	2016-07-31 16:18:55 -05:00
Glenn Johnson	f14eb07dc1	New package - r-survey ... Analysis of complex survey samples.	2016-07-31 15:50:19 -05:00
Glenn Johnson	a9cc6a7d08	New package - r-tarifx ... A collection of various utility and convenience functions.	2016-07-31 15:39:09 -05:00
Glenn Johnson	be2f2e42db	New package - r-e1071 ... Misc functions of the Department of Statistics, Probability Theory Group (Formerly: E1071), TU Wien.	2016-07-31 15:26:13 -05:00
Glenn Johnson	05e5276aec	New package - r-plotrix ... Various plotting functions.	2016-07-31 15:15:55 -05:00
Glenn Johnson	dbf799bbf9	New package - r-gdata ... Data manipulation tools.	2016-07-31 15:07:40 -05:00
Glenn Johnson	f39e570f36	New package - r-roxygen2 ... In-source documentation for R.	2016-07-31 14:52:16 -05:00
Glenn Johnson	58a6039c0a	New package - r-testthat ... A unit testing system for R.	2016-07-31 14:40:46 -05:00
Glenn Johnson	0662b953f0	New package - r-xml ... Tools for parsing and generating XML within R and S-Plus.	2016-07-31 14:25:17 -05:00
Glenn Johnson	1b04b8be01	New package - r-datatable ... Extension of Data.frame	2016-07-31 14:11:04 -05:00
Todd Gamblin	173a16b38a	Merge pull request #1396 from glennpj/r-quantmod ... New package - r-quantmod	2016-07-30 20:15:53 -07:00
Todd Gamblin	68ba5377c1	Merge pull request #1395 from glennpj/r-ggmap ... New package - r-ggmap and dependencies	2016-07-30 20:14:57 -07:00
Todd Gamblin	253507c0c3	Merge pull request #1394 from glennpj/r-maps ... New package - r-maps	2016-07-30 20:14:27 -07:00
Todd Gamblin	7684652ce3	Merge pull request #1393 from glennpj/r-maptools ... New package - r-maptools	2016-07-30 20:14:19 -07:00
Todd Gamblin	b12dc34ba7	Merge pull request #1391 from glennpj/r-caret ... New package - r-caret	2016-07-30 20:14:09 -07:00
Todd Gamblin	9c31ee8a75	Merge pull request #1390 from glennpj/r-glmnet ... New package - r-glmnet	2016-07-30 20:13:50 -07:00
Todd Gamblin	ae5ba2b110	Merge pull request #1389 from glennpj/r-vcd ... New package - r-vcd	2016-07-30 20:13:05 -07:00
Todd Gamblin	13499f1655	Merge pull request #1388 from glennpj/r-multcomp ... New package - r-multcomp	2016-07-30 20:12:51 -07:00
Todd Gamblin	49e9f365d8	Merge pull request #1387 from glennpj/r-randomforest ... New package r-randomforest	2016-07-30 20:12:21 -07:00
Glenn Johnson	41cd861861	New package - r-quantmod ... Qualitative Financial modelling framework.	2016-07-30 18:25:43 -05:00
Glenn Johnson	2913aa8d09	New package - r-ggmap and dependencies ... Spatial visualization with ggplot2	2016-07-30 18:14:02 -05:00
Glenn Johnson	1bd2def41e	New package - r-maps ... Draw geographical maps.	2016-07-30 17:34:07 -05:00
Glenn Johnson	386f0e577a	New package - r-maptools ... Tools for reading and handling spatial objects.	2016-07-30 17:26:31 -05:00
Glenn Johnson	7207ce2a18	New package - r-caret ... Classification and Regression Training	2016-07-30 16:53:54 -05:00
Glenn Johnson	20e52e5052	New package - r-glmnet ... Lasso and Elastic-Net Regularized Generalized Linear Models	2016-07-30 16:38:00 -05:00
Glenn Johnson	e9944150a5	New package - r-vcd ... Visualizing Categorical Data	2016-07-30 16:28:43 -05:00
Glenn Johnson	fc1804974c	New package - r-multcomp ... Simultaneous Inference in General Parametric Models.	2016-07-30 16:09:57 -05:00
Glenn Johnson	12167e8f37	New package r-randomforest ... Breiman and Cutler's Random Forests for Classification and Regression.	2016-07-30 15:39:28 -05:00
Glenn Johnson	8dc26bbcd9	Have R extensions build in parallel. ... Set `MAKEFLAGS` so R extensions can be built in parallel if that is set in spack.	2016-07-30 15:20:14 -05:00
Glenn Johnson	ee7acc6b13	New package r-car ... Companion to Applied Regression.	2016-07-30 15:10:25 -05:00
Kelly (KT) Thompson	6c80b15220	GTK+3: Provide updates to package dependencies. ... WIP: I started trying to build gtkplus@3.20, but this package has many more dependencies than v2 and it requires newer versions of existing packages. This commit provides updates for 5 packages that are required by GTK+3. This is not the complete set of changes required for GTK+3. atk - move default version from 2.14 -> 2.20. glib - move default version from 2.42 -> 2.49 - v2.49 requires pcre+utf as a new dependency. pcre - if variant +utf is selected, add '--enable-unicode-properties' to the configure options. libepoxy - new package to spack - manages OpenGL function pointers. pango - move default version from 1.36 -> 1.40	2016-07-29 09:05:44 -06:00
Denis Davydov	aad5a4c4b3	mkl: flake8 fixes; minor docu update	2016-07-29 14:12:07 +02:00
Denis Davydov	b6ce0e6f0e	trilinos: make sure hdf5 is picked up from Spack	2016-07-29 13:11:12 +02:00
Denis Davydov	943896e237	trilinos: fix lapack lib dir	2016-07-29 13:09:34 +02:00
Denis Davydov	8ee4df8101	hypre: minor cleanup related to blas/lapack	2016-07-29 11:37:19 +02:00
Denis Davydov	572f1cd427	mkl: symlink libs to prefix.lib	2016-07-29 11:36:37 +02:00
Todd Gamblin	e04662f84f	Merge pull request #1344 from LLNL/bugfix/py-nose-nosetests ... do not ignore nosetests script in py-nose	2016-07-28 10:19:13 -07:00
becker33	5caaa2cd75	Merge pull request #1331 from adamjstewart/fixes/mvapich2 ... MVAPICH2 depends on libpciaccess	2016-07-28 09:52:51 -07:00
becker33	3759f62cba	Merge pull request #1235 from davydden/pkg/p4est_run_tests ... p4est: use run_tests instead of a variant	2016-07-27 18:36:36 -07:00
George Hartzell	f855cf6bab	Add package for tree ... Add a package for [tree](http://mama.indstate.edu/users/ice/tree/). It has a Makefile that hardcodes a prefix and some CFLAGS. Used filter_file to: - set the make variable *prefix* to `prefix`; and - comment out their CFLAGS, just use ours.... It installs, runs on CentOS7, and uninstalls cleanly.	2016-07-27 11:32:03 -04:00
Todd Gamblin	458deaae5e	Merge pull request #1350 from adamjstewart/fixes/openssl ... Fix OpenSSL url_for_version	2016-07-27 08:08:00 -07:00
Greg Lee	e4525e57bb	intel parallel studio itac fixes	2016-07-25 14:02:15 -07:00
Greg Lee	dba384108b	intel parallel studio setup mkl environment	2016-07-25 14:01:49 -07:00
Samuel Knight	a2d4dcc636	Added libhio package	2016-07-25 17:32:03 +00:00
becker33	969e785d94	Merge pull request #1352 from glennpj/r_googlevis ... New package - r-googlevis	2016-07-25 10:25:47 -07:00
becker33	5b7ec8de95	Merge pull request #1351 from glennpj/r_htmlwidgets ... New packages - R htmlwidgets	2016-07-25 10:25:19 -07:00
Glenn Johnson	eb865b0df2	Add py-setuptools as dependency ... With the addition of dependency types and with `py-setuptools` set as type='build' there are more packages that need to have `py-setuptools` added as a dependency. This PR adds that dependency for the following packages: - py-h5py - py-networkx - py-pytables - py-scikit-image	2016-07-25 11:23:09 -05:00
Glenn Johnson	81cd458c26	r-curl update and chaged remote archive ... This updates to the 1.0 version of r-curl. The remote archive directory name also changed so change that here as well.	2016-07-24 16:48:07 -05:00
Glenn Johnson	27986c9edf	New packages - R htmlwidgets	2016-07-24 16:43:35 -05:00
Glenn Johnson	b7bf88c761	New package - r-googlevis	2016-07-24 16:38:36 -05:00
Adam J. Stewart	29278090eb	Fix OpenSSL url_for_version	2016-07-24 15:19:27 -05:00
Glenn Johnson	a8855f48aa	Add dependency type tp r- packages ... This PR adds the `nolink` dependency type to r- package dependencies. This is needed due to the new dependency types in Spack. A couple of packages were updated with new versions as well.	2016-07-23 19:43:55 -05:00
Greg Lee	773bca159a	do not ignore nosetests script in py-nose	2016-07-22 15:49:36 -07:00
Glenn Johnson	ec9959b152	R extension dependencies with compiler wrapper ... This commit introduces a mechanism to insure that R package dependencies are built with the Spack compiler wrapper. A copy of Makeconf is made before `filter_compilers` is called. This is then pointed to by the R_MAKEVARS_SITE environment variable set up in `setup_dependent_environment`. With this the normal compilers are used outside of spack and the spack wrapper compilers are used inside of spack. This commit also standardizes on the `join_path` call. It also sets the commented build command to reflect what is actually used with the newer string formatting.	2016-07-22 17:05:01 -05:00
Adam J. Stewart	1be486c90a	Add CGNS package	2016-07-22 17:02:45 -05:00
Todd Gamblin	395c616a48	Merge pull request #950 from xjrc/packages/python ... Enhancement Proposal: Make Python Spack Installs Ignore User Configuration	2016-07-22 13:56:19 -07:00
Joseph Ciurej	fa92f58167	Adding temporary script that fixes all Python extensions w/ 'setup_py'.	2016-07-22 11:17:19 -07:00
Joseph Ciurej	ac2e0962ce	Improved the build flag construction code in the python install method.	2016-07-22 11:12:02 -07:00
Joseph Ciurej	fb2d2303d6	Fixed a bug that was causing Python installs to be affected by user config.	2016-07-22 11:11:08 -07:00
Todd Gamblin	f5b4664c7c	Merge pull request #1336 from glennpj/rcase ... Fix alpha case of dependencies for some r-packages	2016-07-22 10:08:14 -07:00
Todd Gamblin	adffba5081	Merge pull request #1230 from hartzell/update-jdk ... Add URL and md5 for jdk-8u92.	2016-07-21 22:06:29 -07:00
Glenn Johnson	e083c91d5e	Fix alpha case of dependencies. ... A while ago I was asked to convert packages to all lowercase. That was done but some dependencies did not get converted in the specification. This commit fixes that as well as a couple of urls that need to be made explicit and a missing dependency on jdk.	2016-07-21 19:58:04 -05:00
Todd Gamblin	ed737cb2a2	Merge pull request #1333 from LLNL/features/no-openssl-pinging ... Remove remote website pinging from OpenSSL	2016-07-21 16:46:59 -07:00
Todd Gamblin	488550c2e6	Merge pull request #1334 from hartzell/add-gcc-5.4.0 ... Update gcc package with info about gcc-5.4.0	2016-07-21 16:37:31 -07:00
Todd Gamblin	8523f75e6c	Remove remote website pinging from OpenSSL ... - OpenSSL no longer checks remote versions on the openssl site. - Spack is used on systems that aren't connected to the internet, and this check is probably in the wrong place and affects too many commands. We can work on figuring out a better, more configurable place to put a check like this.	2016-07-21 16:35:20 -07:00
George Hartzell	4efe022165	Update with info about gcc-5.4.0	2016-07-21 15:36:22 -04:00
Mitchell Devlin	796308ed85	edit	2016-07-21 13:39:27 -05:00
George Hartzell	4c105895ab	Fix flake8 violations	2016-07-21 14:24:51 -04:00
George Hartzell	9523e50732	Fix shebang line in tcl scripts ... Lmod's configure script goes to the trouble of finding tclsh. This change uses that info to rewrite the #! lines in the tcl scripts so that they call the tclsh that the configure script discovered. It needs to massage the existing shebang lines into something that the sed statement in the makefile can manipulate and it needs to add the path_to_tclsh info into the set of sed statements. Checked with versions 6.4.1 and 6.3.7 (the checksum for 6.0.1 is incorrect, a fix for another time).	2016-07-21 13:58:16 -04:00
George Hartzell	52f0249c61	tcl is actually a runtime dependency. ... lmod uses tclsh at runtime, so adjust the depends_on accordingly (thanks @davydden!).	2016-07-21 13:51:03 -04:00
George Hartzell	a27cb639d8	The lmod package should depend_on('tcl') ... The lmod package needs a tclsh. Up until now it just assumed that one was available on the system. This change adds a depends_on('tcl') to the lmod package. The tcl package installs a tclsh script with an embedded version number (e.g. tclsh8.6) but the lmod configuration looks for tclsh. This change extends the tcl package to symlink tclshX.Y to tclsh in the tcl package bin directory.	2016-07-21 13:51:03 -04:00
Adam J. Stewart	cf8f14780f	MVAPICH2 depends on libpciaccess	2016-07-21 11:13:17 -05:00
Glenn Johnson	ead1b93f75	MPI related changes ... - Redid the code for setting the itac symlink for the cluster edition. - Removed the *PATH variables for MPI to avoid a conflict with other MPI environment modules. - Added missing test for `+all` when checking variants.	2016-07-20 20:03:05 -05:00
Glenn Johnson	0be4c7dfbd	Changes as discussed in PR review ... - removed unneeded entry for `debugger/gdb/intel64_mic` - set `+mpi` directory name to impi	2016-07-20 20:03:05 -05:00
Glenn Johnson	5e5e36a659	Fix flake8 errors.	2016-07-20 19:54:35 -05:00
Glenn Johnson	16f67b5bb1	Setup environment for Intel Parallel Studio ... Set up the environment for the Intel compilers and tools. This commit does the following: - Unset variables that were incorrect from the auto guess prefix inspections. - Add a RemovePath environment_modifications_formats for dotkit. - Set the module environment variables appropriate for the different variants. - Change the component logic so that the '+all' variant works. It was getting split by letter and leaving COMPONENTS empty. - Added a variant checking function. - Added NONRPM_DB_DIR to the silent.cfg so that the product database goes to the installation directory. - With the product database in prefix the code to remove the product database file from the home directory is no longer needed and was removed. - Reformat the 'tools' variant description. There are probably more variables needed for the '+tools' for the 'professional' product version but I do not have access to that.	2016-07-20 19:54:35 -05:00
mwilliammyers	b8444aa518	Merge remote-tracking branch 'upstream/develop' into package-opencv ... * upstream/develop: (126 commits) Fix indent/flake8 error. openexr : Add new package Set environment variables Added gnu packages datamash, parallel, and screen added package as argument to setup_platform_environment ilmbase : Add new IlmBase package Documented linker default fixed flake errors removed commented-out code Set default link type to dynamic on cray. Includes hooks for platform-based environment changes fixed flake errors fixed flake errors Improved cray_xc detection bug fix Improved cray_xc detection remove FIXMEs Ensure that per-4.4.1 NetCDF doesn't use HDF5 1.10 Re-ignore licenses directory Add "default" configuration scope. Draft CDO Make frontend OS on Cray machines a proper linux distro. ...	2016-07-20 18:34:53 -06:00
mwilliammyers	a09bebcaea	opencv : Add section comments	2016-07-20 18:19:59 -06:00
mwilliammyers	a9541997ae	opencv : Reorder depends_on statements	2016-07-20 18:19:03 -06:00
mwilliammyers	bd02892f7b	opencv : Use dso_suffix for python lib	2016-07-20 18:10:10 -06:00
mwilliammyers	ea9fa81ba5	opencv : Fix python include dir for cmake	2016-07-20 18:10:09 -06:00
mwilliammyers	670157b364	opencv : Add zlib cmake support	2016-07-20 18:10:09 -06:00
mwilliammyers	e5ae48a9da	opencv : Add jasper cmake support	2016-07-20 18:10:09 -06:00
mwilliammyers	47514d07b1	opencv : Use dso_suffix	2016-07-20 18:10:08 -06:00
mwilliammyers	f2e8f27c15	opencv : Add libpng cmake support	2016-07-20 18:10:08 -06:00
mwilliammyers	fc79b104f0	opencv : Add libjpeg-turbo cmake support	2016-07-20 18:10:07 -06:00
mwilliammyers	97143768c8	opencv : Add libtiff cmake support	2016-07-20 18:10:07 -06:00
mwilliammyers	d3b97227a1	opencv : Add optional jdk dependency	2016-07-20 18:10:07 -06:00
mwilliammyers	da2b695f93	opencv : Fix lib finding for python	2016-07-20 17:25:05 -06:00
mwilliammyers	10c285a774	opencv : Use string.format()	2016-07-20 17:25:01 -06:00
mwilliammyers	0654ee6a10	opencv : Fix style inconsistencies	2016-07-20 17:24:55 -06:00
mwilliammyers	8cf03c209f	opencv : Make extending python optional	2016-07-20 17:24:50 -06:00
mwilliammyers	c588ce9648	opencv : Improve cmake detecting python	2016-07-20 17:24:46 -06:00
mwilliammyers	3fac2dcc41	opencv : Fix cmake not disabling gtk	2016-07-20 17:24:40 -06:00
mwilliammyers	0080ffcf9f	opencv : Use in operator	2016-07-20 17:24:35 -06:00
mwilliammyers	ce902bf27a	opencv : Minor style changes	2016-07-20 17:24:30 -06:00
mwilliammyers	2cde6aaabd	opencv : Add GUI support	2016-07-20 17:24:26 -06:00
mwilliammyers	578ddea418	opencv : Fix pep8 style issues	2016-07-20 17:24:21 -06:00
mwilliammyers	cf0f5756f5	opencv : Fix python extensions issues	2016-07-20 17:24:13 -06:00
mwilliammyers	9e1d26e973	opencv : Add CUDA extensions	2016-07-20 17:23:46 -06:00
Todd Gamblin	e389afedaa	Merge pull request #1323 from glennpj/rlib ... Set environment variables for R	2016-07-20 15:43:26 -07:00
Todd Gamblin	b9c79824a2	Merge pull request #1313 from sknigh/gnu-tools ... Added packages for GNU tools screen, datamash, and parallel	2016-07-20 15:38:55 -07:00
Todd Gamblin	0777d3a5ba	Merge pull request #1326 from mwilliammyers/package-openexr ... openexr : Add new package	2016-07-20 15:35:36 -07:00
Mitchell Devlin	2344ffd0c7	add libxsmm package	2016-07-20 16:36:31 -05:00
Glenn Johnson	0c75174ec3	Fix indent/flake8 error.	2016-07-20 15:56:20 -05:00
mwilliammyers	e973adf84b	openexr : Add new package	2016-07-20 14:49:03 -06:00
Glenn Johnson	f9137f606f	Set environment variables ... This commit adds `setup_environment` to export the libraries and headers. Fixes #1314.	2016-07-20 15:37:31 -05:00
Todd Gamblin	d8acd41ba1	Merge pull request #1321 from mwilliammyers/package-ilmbase ... ilmbase : Add new IlmBase package	2016-07-20 13:13:21 -07:00
Todd Gamblin	8efbec3c0b	Merge pull request #1292 from eschnett/eschnett/hdf5-default-1.10 ... Make newest HDF5 release the default version	2016-07-20 12:57:45 -07:00
Todd Gamblin	4c7c9f4ff5	Merge pull request #1303 from adamjstewart/features/armadillo ... Updates to Armadillo package	2016-07-20 12:56:41 -07:00
Samuel Knight	24c14ff7a8	Added gnu packages datamash, parallel, and screen	2016-07-20 19:53:14 +00:00
mwilliammyers	c9f4e8ce5a	ilmbase : Add new IlmBase package	2016-07-20 13:13:47 -06:00
alalazo	40cb314638	Merge branch 'develop' of https://github.com/LLNL/spack into features/install_with_phases ... Conflicts: lib/spack/spack/package.py	2016-07-20 21:02:19 +02:00
Todd Gamblin	4434f482c0	remove FIXMEs	2016-07-20 09:48:54 -07:00
Todd Gamblin	3def8ef60e	Merge branch 'cdo' of https://github.com/robertdfrench/spack into robertdfrench-cdo	2016-07-20 09:48:01 -07:00
Todd Gamblin	20584ab084	Merge pull request #1302 from robertdfrench/adios-url ... Get adios from github, not NCCS	2016-07-20 09:47:23 -07:00
Todd Gamblin	7c28338d60	Merge pull request #1301 from robertdfrench/silver-searcher ... Silver Searcher 0.32 is out	2016-07-20 09:47:12 -07:00
Todd Gamblin	17a63c9646	Merge pull request #1284 from eschnett/eschnett/py-h5py.2 ... Declare dependency of "py-h5py +mpi" on "py-mpi4py"	2016-07-20 09:45:54 -07:00
Todd Gamblin	7f20678969	Merge pull request #1291 from eschnett/eschnett/netcdf-4.4.1 ... Update NetCDF to version 4.4.1	2016-07-20 09:34:14 -07:00
Erik Schnetter	69e36c9821	Ensure that per-4.4.1 NetCDF doesn't use HDF5 1.10	2016-07-20 11:25:46 -04:00
Robert D. French	6b0fb476ab	Draft CDO	2016-07-19 15:57:55 -07:00
Robert D. French	1c9cf668a1	Silver Search 0.32 is out ... PEP8 Love + Re-adding v0.30.0	2016-07-19 10:48:53 -07:00
Adam J. Stewart	8034536054	Fix shared object suffix for macOS	2016-07-19 12:37:34 -05:00
Adam J. Stewart	afa4cdc2d8	Updates to Armadillo package	2016-07-19 12:33:04 -05:00
Robert D. French	25e765baae	Download Adios from Github ... Get adios from github, not NCCS Use correct hash, thanks Ben	2016-07-19 10:31:59 -07:00
Todd Gamblin	a64a2e72cf	Merge pull request #1226 from adamjstewart/features/tkinter ... Add Tkinter support for Python	2016-07-19 09:41:12 -07:00
Todd Gamblin	4ad29b6c9b	Merge pull request #1262 from davydden/pkg/suite_sparse_fix_blas ... suite-sparse: enable TBB and fix Blas/Lapack libs	2016-07-19 09:18:42 -07:00
Erik Schnetter	71684cb071	Flex requires m4	2016-07-18 23:04:20 -04:00
Erik Schnetter	4dec06e4f4	Make HDF5 1.10 the default version ... Apply this only after NetCDF 4.4.1 is supported.	2016-07-18 20:14:44 -04:00
Erik Schnetter	94df1b801a	Update NetCDF to version 4.4.1 ... This version supports HDF5 1.10 in a backward-compatible manner.	2016-07-18 20:11:32 -04:00
Todd Gamblin	7555c3d949	Merge pull request #1204 from goxberry/cmake-3.6.0 ... cmake@3.6.0	2016-07-18 16:53:17 -07:00
Todd Gamblin	25a9181a1b	Merge pull request #1287 from mwilliammyers/package-jasper ... jasper: Add new jasper package	2016-07-18 15:43:18 -07:00
mwilliammyers	02340062b4	package - jasper - Add new jasper package	2016-07-18 16:17:07 -06:00
Todd Gamblin	607813d5ce	setuptools is a build dependency in numpy.	2016-07-18 14:13:14 -07:00
Erik Schnetter	67fade5b1e	Declare dependency of "py-h5py +mpi" on "py-mpi4py"	2016-07-18 17:08:56 -04:00
Todd Gamblin	a9ed2296a1	Merge pull request #1282 from eschnett/eschnett/py-numpy ... py-numpy: Add py-setuptools dependencies	2016-07-18 13:58:17 -07:00
Todd Gamblin	fa0bbb57ea	Merge pull request #1270 from davydden/pkg/mumps_scalapack_fix_blas ... Pkg/mumps scalapack fix blas	2016-07-18 13:57:26 -07:00
Erik Schnetter	49cd6f6269	py-numpy: Add py-setuptools dependencies ... Closes #1281.	2016-07-18 16:01:48 -04:00
Todd Gamblin	089189afaf	Merge pull request #1238 from davydden/pkg/mkl_update ... mkl: add provide blas/lapack	2016-07-18 11:52:30 -07:00
Adam J. Stewart	ea425a101a	Flake8 and new tk version	2016-07-18 07:51:08 -05:00
Adam J. Stewart	583232ea52	Build Python with Tkinter support	2016-07-18 07:51:08 -05:00
Todd Gamblin	b3789a4693	Merge pull request #1269 from davydden/pkg/hypre_trilinos_blas ... Pkg/hypre trilinos blas	2016-07-18 03:06:37 -07:00
Denis Davydov	2e4966c854	netlib-scalapack: use dso_suffix	2016-07-18 10:11:18 +02:00
alalazo	6c00a13ed5	Merge branch 'develop' of https://github.com/LLNL/spack into features/install_with_phases ... Conflicts: var/spack/repos/builtin/packages/swiftsim/package.py	2016-07-18 08:49:24 +02:00
Todd Gamblin	c898b9db04	Merge pull request #1188 from epfl-scitas/packages/py-numpy ... RPATH for blas in py numpy	2016-07-17 21:20:39 -07:00
Todd Gamblin	28ce08b9e2	Merge pull request #1258 from eschnett/eschnett/openmpi-2.0.0 ... Update to OpenMPI 2.0.0	2016-07-17 21:01:21 -07:00
Denis Davydov	1bd3a702c9	mumps: flake8 fixes	2016-07-16 15:14:06 +02:00
Denis Davydov	561748a063	netlib-scalapack: flake8 fixes	2016-07-16 08:03:54 +02:00
Denis Davydov	9ea4f80f15	flake8 fixes	2016-07-16 07:58:51 +02:00
Denis Davydov	0752eccfa5	mumps: don't hardcode blas name; remove unused depends_on(lapack)	2016-07-16 07:38:42 +02:00
Denis Davydov	6175ce7559	netlib-scalapack: make sure Spack's Lapack is used	2016-07-16 07:37:38 +02:00
Denis Davydov	987fb137f9	trilinos: don't hardcode blas/lapack names	2016-07-16 07:31:38 +02:00
Denis Davydov	514c61b8fe	hypre: don't hardcode blas/lapack/mpi; optionally run tests	2016-07-16 07:28:31 +02:00
Denis Davydov	96e9dbca08	suite-sparse: enable TBB and fix Blas/Lapack libs	2016-07-16 00:33:39 +02:00
Erik Schnetter	5a1ed51dcd	Correct indentation	2016-07-15 18:10:33 -04:00
becker33	c0be585b67	Merge pull request #1168 from epfl-scitas/packages/gts ... gts : added package	2016-07-15 14:07:59 -07:00
becker33	656b2d562f	Merge pull request #1177 from epfl-scitas/packages/swiftsim_and_metis ... swiftsim : fixed configuration for metis	2016-07-15 14:05:28 -07:00
becker33	f761130343	Merge pull request #1187 from paulhopkins/bugfix/python-updates ... Bugfix/python updates	2016-07-15 14:04:46 -07:00
becker33	f1d85ac2e9	Merge pull request #1227 from glennpj/ggvis ... New package - r-ggvis	2016-07-15 14:00:15 -07:00
becker33	37ce4108ce	Merge pull request #1254 from mdevlin1/features/hmmer ... add HMMER package	2016-07-15 13:52:56 -07:00
Erik Schnetter	4663288b49	Update to OpenMPI 2.0.0	2016-07-15 13:00:48 -04:00
George Hartzell	64b1bafd41	Make flake8 happy with .../jdk/package.py ... My PR for adding a new jdk version failed its travis run because of existing flake8 violoations. This package cleans them up. I'm not particularly pythonic, but most of the complaints were obvious. HOWEVER, I'm not particularly confident about handling long lines by taking an flake8 exception comment onto the end. Feedback welcome...	2016-07-15 12:39:40 -04:00
Mitchell Devlin	5f1b6f000d	add HMMER package	2016-07-15 11:03:57 -05:00
Denis Davydov	b29b7595dd	mkl: add info on interface and threading layers to the docstring	2016-07-15 17:35:10 +02:00
alalazo	893a5565fe	Merge branch 'develop' of https://github.com/LLNL/spack into features/install_with_phases ... Conflicts: lib/spack/spack/__init__.py var/spack/repos/builtin/packages/gmp/package.py var/spack/repos/builtin/packages/openjpeg/package.py	2016-07-15 11:02:55 +02:00
Todd Gamblin	077848fc0b	Merge pull request #378 from mathstuf/dep-types ... dependency types	2016-07-15 00:29:16 -07:00
Todd Gamblin	f3e9588457	Fix package name bug.	2016-07-14 23:15:54 -07:00
Gregory Becker	487ec2aff1	added py-pydatalog package	2016-07-14 23:12:35 -07:00
Todd Gamblin	b8e2799700	Add GNU Prolog package.	2016-07-14 14:38:30 -07:00
Ben Boeckel	a0584c78a8	foam-extend, sundials: add cmake as a builddep ... The sundials doesn't use CMake directly, but it is referenced in the patch step. I suspect it calls CMake somewhere else in its build system.	2016-07-14 16:21:47 -04:00
Ben Boeckel	d71a12438b	cantera: use nolink for python module dependencies ... Unsure about this, but this is probably true.	2016-07-14 16:21:47 -04:00
Ben Boeckel	39aef5fc00	lua: bring in run deps of build and run deps	2016-07-14 16:21:47 -04:00
Ben Boeckel	a82385cdae	R: look only at run dependencies of build and run deps	2016-07-14 16:21:46 -04:00
Ben Boeckel	0ca1a481a3	python: setup the dependent environment properly ... We want the run dependencies of all build and run dependencies of the current package.	2016-07-14 16:21:46 -04:00
Ben Boeckel	ac1701ae29	msgpack-c: add missing dependency on cmake	2016-07-14 16:21:46 -04:00
Ben Boeckel	77965ce5bf	py-matplotlib: require py-setuptools to build	2016-07-14 16:21:46 -04:00
Ben Boeckel	6fd45520da	deptypes: mark deptypes in packages	2016-07-14 16:21:46 -04:00
Ben Boeckel	45c675fe7f	spack: introduce dependency types ... deptypes: allow for different queries For things like Python modules, they are required for the build and runtime, but rather than adding a new parameter for what to query across the dependency DAG, just expose the recursive query parameter.	2016-07-14 16:21:46 -04:00
Ben Boeckel	bdf82246f7	darwin: explicitly use the 'when=' kwarg	2016-07-14 16:21:45 -04:00
Ben Boeckel	1ae43b3405	doxygen: add missing import	2016-07-14 16:21:45 -04:00
Denis Davydov	668b4f1b2c	mkl: set MKLROOT	2016-07-13 23:36:23 +02:00
Adam J. Stewart	3864da6300	Flake8	2016-07-13 11:45:16 -05:00
Adam J. Stewart	d09b0c95ec	Filter both makefiles to allow intel to build bzip2	2016-07-13 11:45:16 -05:00
alalazo	7cedd620f1	package.py : added CMakePackage, changed qhull, ibmisc, openjpeg to work as examples	2016-07-13 17:36:06 +02:00
Denis Davydov	de9cce3e80	p4est: flake8	2016-07-13 11:45:33 +02:00
Denis Davydov	52ca215e29	mkl: add provide blas/lapack	2016-07-13 11:42:40 +02:00
Denis Davydov	b8bd02c5b2	p4est: use run_tests instead of a variant	2016-07-13 10:56:40 +02:00
alalazo	5cc59507f7	package.py : hdf5 and lzo have examples of run_tests	2016-07-13 09:27:09 +02:00
alalazo	97c2224cd6	package.py : extra arguments, fixed inheritance issue ... - added attribute to hold extra arguments in PackageBase instances - fixed registration from within packages - examples : hdf5, lzo	2016-07-13 09:27:09 +02:00
alalazo	a43c63f149	package : added EditableMakefile ... Modifications : - added EditableMakefile to PackageBase subclasses - astyle modified as an example - preliminary hook to stop at a certain phase of install	2016-07-13 09:27:09 +02:00
alalazo	8f75d34331	package : added a stub for AutotoolsPackage, examples in szip and swiftsim	2016-07-13 09:27:09 +02:00
alalazo	8ed028e2d6	package : introduced InstallPhase, added decorators for prerequisites and sanity_checks of phases	2016-07-13 09:27:09 +02:00
George Hartzell	a73d91a2e5	Add URL and md5 for jdk-8u92. ... Installed on Centos7.2 system, `java -version` works.	2016-07-12 16:59:08 -04:00
Glenn Johnson	955d02049c	New package - r-ggvis ... Bring in ggvis and dependencies. GGvis is an implementaion of the 'Grammar of Graphics', combined with shiny.	2016-07-12 12:27:54 -05:00
Todd Gamblin	069de3f008	Merge pull request #1223 from glennpj/tidyr ... New package - r-tidyr	2016-07-12 00:23:09 -07:00
Todd Gamblin	04b3d8d86f	Merge pull request #1222 from glennpj/libxml2 ... Use the site_packages_dir from the Python class	2016-07-12 00:22:45 -07:00
Glenn Johnson	502d15fd3b	New package - r-tidyr ... Tools for changing the layout of data sets.	2016-07-11 21:12:28 -05:00
Glenn Johnson	5e323b052a	Remove import of os ... The import of `os` is no longer needed.	2016-07-11 20:21:25 -05:00
Glenn Johnson	81daaddfe9	Use the site_packages_dir from the Python class ... It is not necessary to set site_packages_dir in this package as it is already provided by the Python package class.	2016-07-11 20:08:30 -05:00
Todd Gamblin	15790d7018	Merge pull request #1207 from davydden/pkg/dealii_update_petsc37 ... dealii: update for petsc37	2016-07-11 15:32:32 -07:00
Glenn Johnson	1b08296392	Fix flake8 error	2016-07-11 17:22:31 -05:00
Glenn Johnson	8de84b5d8a	Fix error reported on Google Groups list ... Fixes the reported `TypeError: not enough arguments for format string` error.	2016-07-11 16:56:26 -05:00
Todd Gamblin	efdcd199c1	Merge pull request #1218 from glennpj/dplyr ... New package - r-dplyr	2016-07-11 13:19:09 -07:00
Glenn Johnson	d99fbbb68f	New package - r-lubridate ... Functions to work with date-times and timespans.	2016-07-11 14:59:47 -05:00
Glenn Johnson	11960e53ef	New package - r-dplyr ... This brings in dplyr and dependencies.	2016-07-11 14:50:33 -05:00
Todd Gamblin	255d05a9c1	Merge pull request #1214 from glennpj/rfilter ... Filter compilers for R	2016-07-11 11:37:39 -07:00
Glenn Johnson	664bdd359f	Filter compilers for R ... This adds a filter_compilers function to have the Makeconf file for R point to the actual compilers rather than the spack wrappers. Also added version 3.3.1.	2016-07-11 13:29:43 -05:00
Todd Gamblin	691e628726	Merge pull request #1206 from davydden/pkg/slepc_371_fix ... slepc: fix install_name for binaries on macOS for 3.7.1	2016-07-11 09:14:53 -07:00
Paul Hopkins	0d3a52ae29	Fix typo in Octave variant suitesparse	2016-07-11 16:00:19 +01:00
Denis Davydov	1b553f2b21	dealii: fix directory structure	2016-07-11 13:21:16 +02:00
Denis Davydov	f14cd67446	dealii: flake8 fixes	2016-07-11 10:56:57 +02:00
Denis Davydov	84afaf385f	dealii: run tests only when self.run_tests=true	2016-07-11 10:22:29 +02:00
Denis Davydov	1cc6e42682	dealii: add petsc/slepc 3.7 support	2016-07-11 10:20:15 +02:00
Denis Davydov	38550bbc1b	slepc: fix install_name for binaries on macOS for 3.7.1	2016-07-11 10:17:09 +02:00
Geoffrey Oxberry	7551e4c14f	cmake@3.6.0 ... Add CMake version 3.6.0.	2016-07-10 18:02:51 -07:00
Todd Gamblin	b0f4052bd8	Merge pull request #1169 from davydden/feature/install_argument_tests_petsc_fixes ... --run-tests install argument and petsc fixes	2016-07-09 12:10:16 -07:00
Denis Davydov	e482994a15	petsc: add -lm when building example	2016-07-09 08:12:34 +02:00
Erik Schnetter	c8137194f0	Update Cereal to 1.2.0	2016-07-08 15:20:09 -04:00
Todd Gamblin	f04258eb29	Merge pull request #1192 from SteVwonder/develop ... docbook-xml: replace 'cp -t' with install_tree	2016-07-08 11:09:41 -07:00
Todd Gamblin	1fa67e458c	Merge pull request #1194 from SteVwonder/lua-fix ... lua: switch self.version[:2] to .up_to(2)	2016-07-08 11:09:18 -07:00
Stephen Herbein	bb8a8ecda3	json-c: fix build by running serially	2016-07-08 10:39:47 -07:00
Paul Hopkins	49e8e4b590	Add comments explaining UCS4 and prevent variant being used on Python 3.3 and above	2016-07-08 13:47:25 +01:00
Stephen Herbein	1a1bf31032	lua: switch self.version[:2] to .up_to(2) ... Previous package would not install correctly, would throw: return os.path.join('share', 'lua', '%d.%d' % self.version[:2]) TypeError: %d format: a number is required, not Version	2016-07-07 18:58:52 -07:00
Stephen Herbein	1b53452618	docbook-xml: replace 'cp -t' with install_tree ... '-t' is not supported by the default cp on Mac OS X replace with install/install_tree cannot just use install_tree since shutil.copytree insists that the dst directory not exist	2016-07-07 17:41:53 -07:00
Nicolas Richart	d339f2af29	flake8 corrections	2016-07-07 18:22:27 +02:00
Nicolas Richart	4c1b53660d	fixes #719	2016-07-07 18:18:01 +02:00
Paul Hopkins	a2be05f24b	Fix whitespace	2016-07-07 14:00:37 +01:00
Paul Hopkins	719b6bfffd	Modify range for ucs4 2.* configure arguments	2016-07-07 13:18:40 +01:00
Paul Hopkins	8c1274bbbb	Fix Python configure arguments for ucs4 variant on Python 3.0 and above	2016-07-07 13:12:43 +01:00
Paul Hopkins	fb6d850637	Add more python versions	2016-07-07 13:09:08 +01:00
Todd Gamblin	6bb31a9a4c	Merge pull request #1175 from davydden/pkg/arpack-3.4.0 ... Pkg/arpack 3.4.0	2016-07-06 14:45:21 -07:00
Todd Gamblin	91da3d8e64	Merge pull request #1174 from LLNL/bugfix/github-1172-suite-sparse ... Bugfix/GitHub 1172 suite sparse	2016-07-06 14:35:59 -07:00
Todd Gamblin	c6e89d9283	Merge pull request #1180 from davydden/pkg/oce_update_and_fix ... oce: add 0.17.2; fix running tests	2016-07-06 14:27:05 -07:00
Denis Davydov	14cef6eab8	oce: flake8 fixes	2016-07-06 22:51:20 +02:00
Denis Davydov	c096bb332a	petsc: fix unit tests	2016-07-06 22:45:43 +02:00
Greg Lee	3df0f1902d	clean up suitesparse deps	2016-07-06 12:15:20 -07:00
Greg Lee	4e27d91351	flake 8 fixes	2016-07-06 11:51:32 -07:00
Denis Davydov	57eaea2e8c	oce: add 0.17.2; fix running tests	2016-07-06 20:35:59 +02:00
Paul Hopkins	61fe89bda0	Add ucs4 unicode variant to Python package	2016-07-06 18:29:54 +01:00
Denis Davydov	3d755a148b	arpack-ng: fix binaries for macOS	2016-07-06 18:30:38 +02:00
alalazo	379f23be02	swiftsim : fixed configuration for metis	2016-07-06 17:51:46 +02:00
Denis Davydov	c8fc56686c	arpack-ng: fix corrupted parpack_cmake.patch	2016-07-06 13:42:59 +02:00
Denis Davydov	63e45c586c	arpack-ng: flake8 fixes and minor update of incode comments	2016-07-06 13:27:02 +02:00
Denis Davydov	a47b3ba01b	arpack-ng: use spec['mpi'].mpif77	2016-07-06 13:23:51 +02:00
Denis Davydov	f5f7abd71f	arpack-ng: add 3.4.0 with cmake build	2016-07-06 12:59:42 +02:00
Greg Lee	4c063c6055	kludge to get suite-sparse-4.5.1 to link with -lstdc++	2016-07-05 13:48:32 -07:00
Greg Lee	976b2b4d25	added suitesparse version 4.5.3	2016-07-05 13:45:22 -07:00
Erik Schnetter	79b3ef0362	Don't enforce hdf5~mpi	2016-07-05 10:58:11 -04:00
alalazo	55c4a676ad	gts : added package	2016-07-05 14:30:48 +02:00
Todd Gamblin	d687e332ad	Fix compile bugs for gcc on Mac OS X with macports. ... - add macports to things that are cleaned out of the environment. - linker incompatibilities cause issues with packages like OpenSSL. - also clean up NOQA stuff in OpenSSL	2016-07-04 22:59:02 -07:00
Todd Gamblin	f2a692c515	Merge pull request #1163 from epfl-scitas/fixes/reserved_name_for_system_packages ... fixes : reserved name for system packages	2016-07-04 21:25:50 -07:00
Todd Gamblin	d166c04db5	Merge pull request #1166 from glennpj/rstan ... New package - RStan	2016-07-04 21:23:10 -07:00
Todd Gamblin	1de675e976	Merge pull request #1165 from robertdfrench/ruby-needs-ffi-zlib ... Ruby 2.2.0 needs ffi and zlib	2016-07-04 21:22:38 -07:00
Glenn Johnson	d5abcc5c88	Fix flake errors	2016-07-04 17:55:10 -05:00
Glenn Johnson	519b760222	New package - RStan ... This PR creates the RStan package and its dependencies.	2016-07-04 17:30:05 -05:00
Robert D. French	53bbbfbe21	Require libffi, zlib; Make Openssl, readline optional	2016-07-04 15:21:13 -04:00
Nicolas	85982017b6	Revert "Corrected the shared libraries and tests in mumps package"	2016-07-04 18:19:09 +02:00
alalazo	861f174f66	qa : fixed flake8 issues	2016-07-04 10:26:32 +02:00
alalazo	3e8391458c	openssl : changed tag for system reserved versions fixes #1150	2016-07-04 10:25:20 +02:00
Todd Gamblin	890df7153a	Merge branch 'efischer/160311-StagedPackage' of https://github.com/citibeth/spack into citibeth-efischer/160311-StagedPackage	2016-07-04 00:27:32 -07:00
Glenn Johnson	729f23b432	Use Executable to set script ... Use `Executable("./install.sh")` to set `install_script`. This allows it to work when the current directory is not on the PATH.	2016-07-01 22:13:40 -05:00
Tzanio Kolev	137db14b75	Update package.py	2016-06-30 15:40:02 -07:00
Tzanio	d3b0cb56b7	Updating MFEM package with v3.2 info.	2016-06-30 15:23:30 -07:00
Elizabeth Fischer	50ac98bc04	Merge remote-tracking branch 'upstream/develop' into efischer/160630-StagedPackage ... # Conflicts: # lib/spack/docs/packaging_guide.rst # lib/spack/spack/package.py Mostly minor/formatting issues in lib/spack/spack/package.py (the heavyweight merge was already done recently). Only one serious issue: it looks like the feature branch had accidentally deleted the line `spack.hooks.post_install(self)`. This got added back in from develop.	2016-06-30 09:13:24 -04:00
Todd Gamblin	a7b8cb6901	Merge pull request #1145 from davydden/pkg/petsc_tests ... petsc: run a test	2016-06-30 01:58:35 -07:00
Denis Davydov	6f4b0e9bda	petsc: fix flake8 and ~mpi case in tests	2016-06-30 08:22:01 +02:00
Denis Davydov	37728afada	petsc: run a test	2016-06-30 00:19:50 +02:00
Adam J. Stewart	2fcaa011ce	Add py-restview package	2016-06-29 12:57:58 -05:00
Todd Gamblin	7df89896f4	Merge pull request #1113 from davydden/octave_extensions ... Octave extensions	2016-06-29 00:38:05 -07:00
Todd Gamblin	0fd58fb585	Merge pull request #1133 from davydden/pkg/dealii_fix_tests ... dealii: run more unit tests when building @dev	2016-06-28 10:02:43 -07:00
Denis Davydov	32c801bbf6	dealii: run more unit tests when building @dev	2016-06-28 18:06:56 +02:00
Todd Gamblin	ad48ad7586	Merge pull request #1131 from epfl-scitas/fixes/swift_git_environment_variables ... fix : swiftsim will set git environment variables in the appropriate hook	2016-06-28 09:05:26 -07:00
alalazo	5cdd37959a	swiftsim : substituted tag with corresponding commit	2016-06-28 18:03:28 +02:00
Todd Gamblin	6810965457	Merge pull request #1130 from davydden/gmsh ... Gmsh -- various fixes	2016-06-28 08:49:06 -07:00
alalazo	18612eca59	qa : fixed flake8 issues	2016-06-28 12:59:13 +02:00
alalazo	48888b0f8e	swift : setting environment variables in the right place	2016-06-28 12:57:19 +02:00
Denis Davydov	c4c167c1ca	octave: rename executable Octave to octave	2016-06-28 11:25:45 +02:00
Denis Davydov	51b0f53b33	gmsh: flake8 fixes	2016-06-28 10:50:35 +02:00
Denis Davydov	06e38d2ca2	gmsh: various fixes ... (i) add new version (ii) add OCE, PETSc and SLEPc as dependencies (iii) fix Blas/Lapack configuration (iv) disable internal Metis which does not compile	2016-06-28 10:33:25 +02:00
Todd Gamblin	793c9f5546	Merge pull request #1116 from mwilliammyers/package-lrzip ... Add package lrzip & its dependency lzo	2016-06-27 22:32:57 -07:00
mwilliammyers	9bb918915f	Add package lrzip & its dependency lzo	2016-06-27 15:19:13 -06:00
Todd Gamblin	d7c2f683d9	Merge pull request #1004 from UCL-RITS/bare-eigen ... Option to install eigen without dependencies	2016-06-27 13:35:35 -07:00
Nicolas Richart	9026fb8e8a	Corrections for PETSc 3.7 and detection of PETSC version to enable TAO	2016-06-27 20:52:05 +02:00
Todd Gamblin	3ea9d1e665	Merge pull request #1122 from LLNL/bugfix/newarch-sys_type ... Bugfix/newarch sys type	2016-06-27 10:07:03 -07:00
Todd Gamblin	bf4eeb48b9	Merge pull request #1099 from adamjstewart/fixes/hdf5 ... Fix self-check for hdf5@1.10.0-patch1	2016-06-27 09:47:17 -07:00
Todd Gamblin	76458f5bfc	Merge pull request #1002 from epfl-scitas/packages/foam-extend ... Package foam-extend	2016-06-27 09:40:49 -07:00
Denis Davydov	0faa6dd753	octave: make extendable and add a package	2016-06-27 13:44:58 +02:00
Todd Gamblin	305d5698df	Rename spack.architecture.sys_type() to spack.architecture.platform()	2016-06-27 02:19:08 -07:00
alalazo	13fcb3c083	swift : renamed swiftsim	2016-06-27 09:25:58 +02:00
alalazo	f3f309a22a	Merge branch 'develop' of https://github.com/LLNL/spack into packages/swift_durham	2016-06-27 09:08:37 +02:00
Todd Gamblin	a1db306a0c	Merge pull request #1009 from epfl-scitas/packages/emacs ... Emacs: adding dependencies to be able to build without the system libs	2016-06-26 22:46:45 -07:00
Todd Gamblin	bad32724ec	Merge pull request #1092 from adamjstewart/features/netcdf-f ... Add latest version of netcdf-fortran and curl	2016-06-26 22:38:00 -07:00
Todd Gamblin	8b35940857	Merge pull request #1103 from adamjstewart/features/mpi ... Add MPI environment variables to packages	2016-06-26 22:35:39 -07:00
Todd Gamblin	f86f6c6274	Merge pull request #1104 from mwilliammyers/py-protobuf ... Add new package py-protobuf	2016-06-26 22:28:57 -07:00
Todd Gamblin	7d85902f37	Merge pull request #1093 from eschnett/eschnett/julia-update ... Update Julia to 0.4.6	2016-06-26 22:28:33 -07:00
Todd Gamblin	c096aa9557	Merge pull request #997 from glennpj/glib_gcc ... Get glib to compile with gcc-6.1	2016-06-26 22:28:07 -07:00
Nicolas Richart	f3accb111e	correcting flake8	2016-06-27 01:23:14 +02:00
Nicolas Richart	7cf1313572	changes to use from_sourcing_file	2016-06-27 00:55:26 +02:00
alalazo	9de0503188	qa : flake8 issues	2016-06-26 22:00:10 +02:00
alalazo	11863d2de3	packages : moved adios and mxml into builtin repo	2016-06-26 21:56:06 +02:00
alalazo	a2ba60f6a8	qa : flake8 issues	2016-06-26 17:38:48 +02:00
alalazo	e5b36583b5	swift : added package	2016-06-26 17:36:53 +02:00
alalazo	acd9014553	autotools : set Executable() in dependent modules	2016-06-26 17:36:33 +02:00
mwilliammyers	2c6c21a3bf	Add new package py-protobuf	2016-06-23 15:54:20 -06:00
Adam J. Stewart	8921bf4552	Add MPI environment variables to packages	2016-06-23 10:08:40 -05:00
Adam J. Stewart	d566510a40	Flake8 and url_for_version fixes	2016-06-22 15:22:42 -05:00
Adam J. Stewart	3f4bf04dde	Fix self-check for hdf5@1.10.0-patch1	2016-06-22 14:40:51 -05:00
Erik Schnetter	c904a42c5b	Address flake errors	2016-06-22 11:09:45 -04:00
Adam J. Stewart	b66f5b6231	Add latest version of cURL	2016-06-22 10:05:20 -05:00
Erik Schnetter	e398c0dc5b	Update Julia to 0.4.6	2016-06-22 11:00:00 -04:00
Adam J. Stewart	060fb596f7	Add latest version of netcdf-fortran	2016-06-22 09:52:17 -05:00
Nicolas Richart	97feca0888	Merge branch 'develop' into packages/foam-extend	2016-06-22 14:51:57 +02:00
Todd Gamblin	e41d67e031	Merge pull request #1078 from adamjstewart/features/pillow ... Allow py-pillow to link to Spack-built libraries	2016-06-22 01:11:25 -07:00
Todd Gamblin	8b5467e65d	Merge pull request #1049 from glennpj/newR_database ... New R database packages	2016-06-21 13:23:58 -07:00
Adam J. Stewart	a7ffb2c1a4	Flake8	2016-06-21 15:21:53 -05:00
Todd Gamblin	bbe2db5814	Merge pull request #1087 from LLNL/bugfix/new-harfbuzz-fix ... Bugfix/new harfbuzz fix	2016-06-21 13:10:50 -07:00
Adam J. Stewart	66089c89aa	Depend on pil	2016-06-21 14:55:49 -05:00
Adam J. Stewart	2efc67da60	Remove +tk variant, provide pil	2016-06-21 14:50:33 -05:00
Gregory L. Lee	e0fbf14f99	consolidated f2py regex	2016-06-21 09:23:58 -07:00
Gregory L. Lee	8f3954c1bd	flake 8 fixes for cairo, freetype, and harfbuzz	2016-06-21 08:47:22 -07:00
Gregory L. Lee	4041f45b6c	fixed conflicts in python package	2016-06-21 08:47:11 -07:00
Todd Gamblin	f18e1a9371	Merge branch 'features/cantera' of https://github.com/adamjstewart/spack into adamjstewart-features/cantera	2016-06-20 23:53:48 -07:00
Glenn Johnson	77cd474a2d	Make all packages lowercase.	2016-06-20 20:10:44 -05:00
alalazo	b86e3047f3	openmpi : revert part of #1079 (OpenMPI can be built without fortran) ... Building OpenMPI without fortran is possible, and was already handled. Raising an install error we effectively renounce at clang+OpenMPI. build_environment : sets 'CC', 'CXX', and similar variables only if a compiler is found	2016-06-20 20:46:11 +02:00
Todd Gamblin	f74d4b0660	Merge pull request #1052 from adamjstewart/features/psi4 ... Add Psi4 Package	2016-06-20 10:49:45 -07:00
Todd Gamblin	9b299cb2bb	Merge pull request #1023 from epfl-scitas/packages/mumps ... Corrected the shared libraries and tests in mumps package	2016-06-20 10:48:12 -07:00
Todd Gamblin	cec283f608	Merge pull request #1059 from epfl-scitas/packages/mpi_wrappers_with_rpath ... MPI : have wrappers set RPATH instead of RUNPATH	2016-06-20 10:47:24 -07:00
Todd Gamblin	c2d0870924	Merge pull request #1063 from eschnett/eschnett/openmpi-1.10.3 ... Update OpenMPI to 1.10.3	2016-06-20 10:45:56 -07:00
Todd Gamblin	31bb47356f	Merge pull request #1022 from glennpj/r-devtools ... new package: r-devtools	2016-06-20 10:34:23 -07:00
Todd Gamblin	b3881701c5	Merge pull request #1021 from glennpj/packrat ... new package: r-packrat	2016-06-20 10:33:55 -07:00
Todd Gamblin	0fbd2fe224	Merge pull request #1000 from glennpj/new_R ... Add version 3.3.0 of R and extensions	2016-06-20 10:33:43 -07:00
Todd Gamblin	c09111bbef	Merge pull request #1053 from davydden/pkg/dealii_suite_update ... update Petsc, Slepc, Trilinos, Superlu-dist and deal.II	2016-06-20 10:32:52 -07:00
Todd Gamblin	8047edfb56	Merge pull request #1029 from adamjstewart/features/armadillo ... Add Armadillo and SuperLU packages	2016-06-20 10:29:29 -07:00
Todd Gamblin	265b9bcb0f	Merge pull request #1076 from JRWynneIII/ferret ... Added spec to build Ferret	2016-06-20 10:28:42 -07:00
Adam J. Stewart	c9eb5f8173	Use non-checksummed PyPi download URLs	2016-06-20 12:24:45 -05:00
Adam J. Stewart	7e1ee463ca	Install examples for sundials	2016-06-20 12:24:45 -05:00
Adam J. Stewart	81ac3b62fc	Filter compilers and link boost properly	2016-06-20 12:24:45 -05:00
Adam J. Stewart	a21e845ce7	Flake8	2016-06-20 12:24:45 -05:00
Adam J. Stewart	2220784eda	Add scons support, .zip support, and Cantera package	2016-06-20 12:24:45 -05:00
Todd Gamblin	12b9d6da10	Merge pull request #1083 from robertdfrench/tmux-2.2 ... Tmux 2.2	2016-06-20 09:36:55 -07:00
Robert.French	83b0c16728	Tmux 2.2 with PEP8 ... Tmux 2.2 Provide variant to skip utempter Remove utempter variant; 2.2 doesn't need it Flake8ify	2016-06-20 16:26:49 +00:00
Erik Schnetter	e43eaad557	New package porta	2016-06-19 14:11:36 -04:00
Erik Schnetter	a0c0728ea8	New package polymake	2016-06-19 13:47:26 -04:00
Erik Schnetter	b4da4425ff	Add header files to lrslib install	2016-06-19 13:47:02 -04:00
Erik Schnetter	fa471a4ed1	Add missing header files to Bliss install	2016-06-19 13:46:38 -04:00
Erik Schnetter	d8b9cda632	Build Bliss both with and without GMP	2016-06-19 12:48:47 -04:00
Denis Davydov	cf4a34c657	openmpi: raise an error without Fortran compiler	2016-06-19 11:59:29 +02:00
Denis Davydov	1cc04cff27	openblas: raise an error without Fortran compiler	2016-06-19 11:59:10 +02:00
Erik Schnetter	71e92774eb	New package cddlib	2016-06-18 22:47:59 -04:00
Erik Schnetter	8fa8fc239f	New package "nauty and Traces"	2016-06-18 22:22:58 -04:00
Erik Schnetter	e5b08544ff	New package Panda	2016-06-18 22:02:36 -04:00
Erik Schnetter	2009354719	Add fourier tool to lrslib	2016-06-18 21:38:15 -04:00
Erik Schnetter	a5086f474e	New package lrslib	2016-06-18 18:03:09 -04:00
Erik Schnetter	92a7c0ddd5	Update Bliss to use -O3	2016-06-18 18:02:52 -04:00
Erik Schnetter	64aaf7ba81	New package cdd	2016-06-18 16:37:08 -04:00
Erik Schnetter	83d4cdc090	Update Bliss	2016-06-18 16:36:43 -04:00
Erik Schnetter	a07056d67b	Add Bliss package	2016-06-18 16:20:37 -04:00
Adam J. Stewart	652a5eb592	Allow py-pillow to link to Spack-built libraries	2016-06-17 18:09:03 -05:00
Todd Gamblin	62b2f2a7c9	Merge pull request #1065 from epfl-scitas/packages/espresso_update ... espresso : update to 5.4.0	2016-06-17 14:51:45 -07:00
Todd Gamblin	9a8d109650	Merge pull request #1044 from adamjstewart/features/sncosmo ... Add py-sncosmo package	2016-06-17 14:50:37 -07:00
Todd Gamblin	0bbbfc2ef7	Merge pull request #946 from LLNL/features/intel2 ... Intel software packages and license enhancements	2016-06-17 14:28:39 -07:00
Adam J. Stewart	536fa73d5f	Python flake8 overhaul	2016-06-17 13:33:09 -05:00
Robert D. French	448f8c43d4	Added working Ferret spec ... Fixed ferret spec. It builds now Made ferret spec more flake8-y Fixed homepage and info text about Ferret Removed vim swap file Reverted changes to netcdf-fortran spec and added netcdf~mpi dependency to ferret spec to compensate for it Fixed flake8 issues!	2016-06-17 14:23:50 -04:00
Adam J. Stewart	80d444624b	Fix activation of sites.py for sncosmo	2016-06-17 11:08:16 -05:00
Adam J. Stewart	24f65c502e	Add additional Astropy dependencies	2016-06-17 10:45:10 -05:00
Adam J. Stewart	b2aa78d6ab	Remove version constraints	2016-06-17 10:45:10 -05:00
Adam J. Stewart	4eeaff175c	Allow packages to build	2016-06-17 10:44:28 -05:00
Adam J. Stewart	a660c60eb1	Add py-sncosmo package	2016-06-17 10:43:34 -05:00
Glenn Johnson	8970785d33	Add 'jdk' as a dependency. ... Add jdk as a dependency so that R has support for java and allow packages that need java to work.	2016-06-16 23:08:55 -05:00
Glenn Johnson	a813f03955	Add list_url for old versions.	2016-06-16 23:08:55 -05:00
Glenn Johnson	4850b9d4d1	Make install comment consistent with actual call.	2016-06-16 23:08:55 -05:00
Glenn Johnson	7da405e630	Add validator for bioconductor packages ... This commit adds a validator function to make sure the versions of R and bioconductor are in sync.	2016-06-16 23:08:55 -05:00
Glenn Johnson	7213b12324	Tweak how R packages are built. ... Add bzip2 as a dependency to base R. Switch from installing the R packages from tar files to installing from the extracted directory. This is more in line with a standard install and also allows installing from VCS. Use the Bioconductor version for BiocGenerics and future Bioconductor packages. Suffix the package with 'bioc-$version' to indicate which Bioconductor release the package is a part of. This is actually more important than the actual version attached to individual packages although those are subject to change within the Bioconductor branch.	2016-06-16 23:08:55 -05:00
Glenn Johnson	0e64c25ffc	Fix flake8 errors ... Use Bioconductor provided Short URL for homepage in BiocGenerics. Wrap description text for utf variant in pcre.	2016-06-16 23:08:54 -05:00
Glenn Johnson	37dc13edaf	Update version of BiocGenerics ... The BioConductor repositories only keep the most recent version so this has to be bumped.	2016-06-16 23:08:54 -05:00
Glenn Johnson	8704a4ed35	Use configure_args rather than options ... Replaced 'options' with 'configure_args'. That seems like a better name and is consistent with the packaging guide.	2016-06-16 23:08:54 -05:00
Glenn Johnson	fe256870b4	Add variant for UTF support to pcre ... This will build PCRE with UTF support by default. That seems to be reasonable for most environments.	2016-06-16 23:08:54 -05:00
Glenn Johnson	cb3505769b	Clean up R extensions ... Run the existing R extension packages through autopep8 to clean up.	2016-06-16 23:07:13 -05:00
Glenn Johnson	6649f9edc2	Add version 3.3.0 of R ... This commit adds the 3.3.0 version of R and adds dependencies on curl and pcre.	2016-06-16 23:07:13 -05:00
Glenn Johnson	64acbbfcf0	Clean up R package files ... - remove unused imports - apply pep8 - reformat text strings	2016-06-16 23:07:13 -05:00
Todd Gamblin	9ee6cbfb40	Merge pull request #944 from adamjstewart/features/bertini ... Add bertini package	2016-06-16 16:57:50 -07:00
Todd Gamblin	344280154a	Merge pull request #962 from adamjstewart/features/hpl ... Add HPL benchmark package	2016-06-16 16:57:24 -07:00
Todd Gamblin	88b73bacdb	Merge branch 'features/newarch' into develop ... Conflicts: lib/spack/spack/config.py var/spack/repos/builtin/packages/lua/package.py	2016-06-16 03:03:26 -07:00
alalazo	a1cbb73f8b	qa : fixed flake8 issues	2016-06-16 11:24:18 +02:00
alalazo	8d9ffcf565	espresso : updated to 5.4.0, added Parallel=False	2016-06-16 11:22:26 +02:00
Todd Gamblin	76dfaa71a7	fix up packages for new architecture.	2016-06-16 01:47:20 -07:00
Todd Gamblin	40d25d9062	Add libxcb dependencies. Fix up packages to get py-basemap and stat to build.	2016-06-16 00:56:53 -07:00
Erik Schnetter	a7ab064a9e	Update OpenMPI to 1.10.3	2016-06-15 18:05:23 -04:00
Massimiliano Culpo	daa46105a7	mpich based providers : shortened filter_compilers	2016-06-15 21:37:12 +02:00
Adam J. Stewart	44e188f111	Remove MPI support, fix INCLUDE filters	2016-06-15 14:17:30 -05:00
Adam J. Stewart	7b97ea248a	More template filtering	2016-06-15 14:17:29 -05:00
Adam J. Stewart	9cf1257be4	Filter compilers	2016-06-15 14:17:29 -05:00
Adam J. Stewart	deb4f919cf	Psi4 tweaks	2016-06-15 14:17:29 -05:00
Adam J. Stewart	9d99042fed	Add Psi4 package	2016-06-15 14:17:29 -05:00
Denis Davydov	0e04e65ae0	trilinos: specify superlu-dist version dependency	2016-06-15 18:44:59 +02:00
Denis Davydov	5fe531050c	flake8 fixes for dealii	2016-06-15 18:33:34 +02:00
Denis Davydov	e76083205f	flake8 fixes for slepc	2016-06-15 18:33:08 +02:00
Denis Davydov	6390acc660	flake8 fixes for petsc	2016-06-15 18:32:42 +02:00
Denis Davydov	6d714e4425	flake8 fixes for superlu-dist	2016-06-15 18:31:39 +02:00
Denis Davydov	d0d83cfe1e	slepc: build by default with Arpack	2016-06-15 18:21:13 +02:00
Denis Davydov	d04dc8440f	dealii: specify petsc/slepc version dependencies	2016-06-15 18:21:13 +02:00
Denis Davydov	4d40f86bd3	trilinos: add 12.6.2 and 12.6.3	2016-06-15 18:21:13 +02:00
Denis Davydov	5358ffbe5a	slepc: add 3.6.3 and 3.7.1; specify petsc version dependency	2016-06-15 18:21:13 +02:00
Denis Davydov	9ceb8fea78	petsc: add 3.6.4 and 3.7.2; specify superlu-dist version dependency	2016-06-15 18:21:13 +02:00
Denis Davydov	a860a3d614	superlu-dist: avoid harcoding blas/lapack/mpi; remove preferred version	2016-06-15 18:21:13 +02:00
Todd Gamblin	c803f7ae98	Merge pull request #1045 from eschnett/eschnett/openmpi-verbs-usr ... Do not pass "/usr" or "/usr/local" as path to configure	2016-06-15 09:06:12 -07:00
Todd Gamblin	4ede87a8b0	Merge pull request #1058 from eschnett/eschnett/blosc ... Add packages c-blosc and hdf5-blosc	2016-06-15 09:04:48 -07:00
Todd Gamblin	9dd1f2747a	Merge pull request #1028 from JRWynneIII/boost-graph-parallel-fix ... Add variant for boost graph and parallel graph	2016-06-15 09:03:01 -07:00
Todd Gamblin	08badb5a35	Merge pull request #1040 from KineticTheory/pkg-trilinos ... Make Boost an optional feature of Trilinos.	2016-06-15 08:57:38 -07:00
Todd Gamblin	ff3469385b	Merge pull request #1037 from KineticTheory/develop ... Package serf also depends on zlib.	2016-06-15 08:57:14 -07:00
Todd Gamblin	bfedeadacb	Merge pull request #1031 from opoplawski/pcre ... Add patch to compile pcre with Intel 16.0.3 compiler	2016-06-15 08:56:53 -07:00
alalazo	b09bee8158	qa : fixed flake8 issues	2016-06-15 13:29:30 +02:00
alalazo	b59d4f243b	openmpi, mvapich2, mpich : filtered out "--Wl,--enable-new-dtag" in wrappers, as it turns RPATH into RUNPATH ... Apart from that turned `os.path.join` into `join_path` and `os.environ` into `env` in the packages	2016-06-15 13:21:39 +02:00
Erik Schnetter	05d7378da5	Install shared libraries correctly on Linux	2016-06-14 17:13:20 -04:00
Erik Schnetter	ca5180f7a2	Correct Blosc install on Darwin	2016-06-14 17:03:00 -04:00
Erik Schnetter	e6ec372926	Add packages c-blosc and hdf5-blosc ... c-blosc provides the Blosc compression filter, and hdf5-blosc provides a plugin for HDF5 to use that filter.	2016-06-14 09:59:48 -04:00
Glenn Johnson	e226837d33	Fix flake8 error.	2016-06-13 23:04:26 -05:00
Glenn Johnson	8861c99333	New package - r-foreign	2016-06-13 22:50:07 -05:00
Glenn Johnson	5ba5ef6c46	Add list_url for older versions.	2016-06-13 17:50:27 -05:00
Glenn Johnson	94d0f21823	New package - r-xlsxjars	2016-06-13 17:50:06 -05:00
Glenn Johnson	4767185082	New package - r-xlsx	2016-06-13 17:48:59 -05:00
Glenn Johnson	5cd09af066	New package - r-XLConnect	2016-06-13 17:48:44 -05:00
Glenn Johnson	3c234a7d3b	New package - r-XLConnectJars	2016-06-13 17:36:50 -05:00
Glenn Johnson	450b082daf	Do not need to depend on jdk here because R itself does.	2016-06-13 17:35:35 -05:00
Glenn Johnson	427fa7fd0a	New package - rJava	2016-06-13 17:26:01 -05:00
David Boehme	52160bff18	Use https for github	2016-06-13 11:47:28 -07:00
Glenn Johnson	d398ebe21f	New package - r-RSQLite	2016-06-12 22:06:06 -05:00
Glenn Johnson	b96b32e9ec	New package - r-RPostgreSQL	2016-06-12 22:05:45 -05:00
Glenn Johnson	77e8096a6f	New package - r-RODBC	2016-06-12 22:05:26 -05:00
Glenn Johnson	bfb0985c38	New package - r-RMySQL	2016-06-12 22:05:10 -05:00
Glenn Johnson	a7a640bfb8	New package - rDBI	2016-06-12 22:04:37 -05:00
Glenn Johnson	b05a565648	New package - mariadb	2016-06-12 22:04:09 -05:00
Glenn Johnson	5d3965c7a6	New package - unixODBC	2016-06-12 22:03:24 -05:00
Glenn Johnson	7727f6fc7e	New package - libaio	2016-06-12 22:02:46 -05:00
Glenn Johnson	4dcb15cf6d	Ran through autopep8 and cleaned up.	2016-06-12 22:00:49 -05:00
Glenn Johnson	bdb9af63ed	Add version 9.5.3 and add readline as a dependency.	2016-06-12 21:58:41 -05:00
Glenn Johnson	8ff7cbb9ce	Run binutils/package.py through autopep8.	2016-06-12 21:57:03 -05:00
Glenn Johnson	1601cf1b14	Patch binutils ... This commit adds a patch to update symbol versions from linker scripts. This is seen with libmysqlclient.so which has to maintain compatibility across two versions. Only one can be the default. https://sourceware.org/git/gitweb.cgi?p=binutils-gdb.git;a=commitdiff;h=544ddf9322b1b83982e5cb84a54d084ee7e718ea	2016-06-12 21:46:11 -05:00
Kelly (KT) Thompson	31d2c38687	Update formatting to meet code style requirements.	2016-06-12 19:56:29 -06:00
Kelly (KT) Thompson	b89bcdff62	Make Boost an optional feature of Trilinos. ... I have been unable to build Boost with some toolset/platform combinations. The users I support don't need the Boost features in Trilinos, so I have been manually hacking trilinos/package.py to disable boost. I would like to propose that these changes be added to the released version. + Add boost as a variant, default to true so there is no change to existing behavior. + Move the CMake configure options related to Boost into a conditional block that is triggered by "if '+boost' in spec".	2016-06-12 19:48:45 -06:00
Tom Scogland	1b28991e0a	Merge pull request #1026 from epfl-scitas/packages/lmod ... lmod : updated package and dependencies	2016-06-12 17:01:41 -07:00
Glenn Johnson	59c9816dbf	Make quotations in variables consistent.	2016-06-11 16:01:23 -05:00
Glenn Johnson	0e9f8bd38d	Add list_url for old versions.	2016-06-11 15:53:28 -05:00
Erik Schnetter	953b65abcc	Do not pass "/usr" or "/usr/local" as path to configure	2016-06-11 16:41:39 -04:00
Glenn Johnson	6c0ea77d1d	Add list_url for older versions.	2016-06-11 15:36:43 -05:00
Adam J. Stewart	85502e34f9	CMake knows how to create PIC	2016-06-10 14:35:19 -05:00
Kelly (KT) Thompson	883f601bca	Fix style issues.	2016-06-09 19:18:25 -06:00
Kelly (KT) Thompson	915115386a	Package serf also depends on zlib. ... + Add zlib as a required dependency. + Point scons build system to the spack provided zlib installation.	2016-06-09 18:30:28 -06:00
Orion Poplawski	454acf58af	Add additional blank line for flake8	2016-06-08 16:49:42 -06:00
Orion Poplawski	e3ca5e6676	Add patch to compile pcre with Intel 16.0.3 compiler	2016-06-08 16:23:04 -06:00
Adam J. Stewart	65896ff2ed	Add Armadillo and SuperLU packages	2016-06-08 14:11:14 -05:00
James Riley Wynne III	4b9707f8ea	Fixed flake8 formatting problems	2016-06-08 14:36:45 -04:00
James Riley Wynne III	42a10d5690	Fixes issue #438	2016-06-08 12:43:05 -04:00
Nicolas Richart	2d21693b9d	Missing file to patch mumps	2016-06-08 17:09:13 +02:00
alalazo	564483936f	qa : fixed flake8 issues	2016-06-08 16:33:49 +02:00
alalazo	4a61efe641	lmod : fixed issues with LUA_PATH during installation	2016-06-08 16:21:09 +02:00
alalazo	f4a39457de	lmod : updated package and dependencies	2016-06-08 15:35:15 +02:00
Nicolas Richart	165411f4a5	bug fix in the +mpi case	2016-06-08 15:17:12 +02:00
Nicolas Richart	498c098d11	Cleaning flake warnings in mumps package	2016-06-08 14:57:54 +02:00
Nicolas Richart	e124c86a4f	Corrected the shared libraries and tests in mumps package	2016-06-08 14:17:46 +02:00
Glenn Johnson	bb19dffb26	Fix flake8 error.	2016-06-07 23:40:12 -05:00
Glenn Johnson	ad0cfa41aa	Fix flake8 errors	2016-06-07 23:37:49 -05:00
Glenn Johnson	738720a000	new package: r-devtools ... This PR brings in the R devtools package and it dependencies.	2016-06-07 23:20:46 -05:00
Greg Lee	bb57b82794	flake8 fixes	2016-06-07 20:15:02 -07:00
Glenn Johnson	2262bc95f1	new package: r-packrat ... Manage the R packages your project depends on in an isolated, portable, and reproducible way. https://github.com/rstudio/packrat/	2016-06-07 22:04:11 -05:00
Greg Lee	25b2f7b1d7	put older versions back + version-specific dwarfdump dir	2016-06-07 20:02:38 -07:00
Mayeul d'Avezac	0b5ce9e16a	💄 style points requested by flake8	2016-06-03 11:52:19 +01:00
Nicolas Richart	8b6035ab82	Making emacs dependent on internal packages	2016-06-03 00:24:00 +02:00
Todd Gamblin	3d2b25e45c	Merge pull request #1014 from epfl-scitas/packages/mvapich2 ... Changes to take into account slurm in version @2.1: of mvapich2	2016-06-02 01:08:28 -07:00
Todd Gamblin	27bc49d8c8	Merge pull request #1001 from ashkan2200/develop ... Dealii, fixed issue with tests	2016-06-02 01:01:29 -07:00
Todd Gamblin	b843b73bb5	Merge pull request #1005 from eschnett/eschnett/hdf5-update ... Update HDF5 to version 1.10.0-patch1	2016-06-02 00:57:15 -07:00
Todd Gamblin	1fb4fa02e3	Merge pull request #1010 from epfl-scitas/packages/tetgen ... Adding a version to tetgen	2016-06-02 00:54:09 -07:00
Nicolas Richart	53dcc39b72	removing useless selfs	2016-06-01 17:33:54 +02:00
Nicolas Richart	3ab8468e73	Correcting the flake8 warnings	2016-06-01 16:43:08 +02:00
Nicolas Richart	0451c8e55f	Addapting the mvapich2@2.1: configure options for slurm	2016-06-01 15:58:00 +02:00
Nicolas Richart	d802144f39	Introduced a bug by correcting flake8 warnings	2016-06-01 03:31:29 +02:00
Nicolas Richart	5d4a0e4050	Corrections for flake8	2016-06-01 03:28:42 +02:00
Nicolas Richart	97bad2c1ac	Corrections for flake8	2016-06-01 03:25:37 +02:00
Nicolas Richart	58052e6632	Adding package fenics	2016-06-01 03:20:56 +02:00
Nicolas Richart	cb673765c2	Adding a version to tetgen	2016-06-01 03:02:48 +02:00
Nicolas Richart	0df0677d5b	Adding a variant to link against the spack libraries instead of the system ones	2016-06-01 03:00:03 +02:00
Nicolas Richart	9db8dc1895	Removing extra dependencies + minor fix according to remarks on #1002	2016-06-01 00:57:01 +02:00
Erik Schnetter	c03c689cb2	Update HDF5 to version 1.10.0-patch1	2016-05-31 12:18:17 -04:00
Adam J. Stewart	564e7f5e5b	Don't build in parallel	2016-05-31 09:32:24 -05:00
Mayeul d'Avezac	29b85fbce0	Eigen can be installed with dependencies	2016-05-31 10:10:12 +01:00
Ali Dorostkar	6f96484f83	Spacing correction ... More spacing correction	2016-05-31 09:58:29 +02:00
Ali Dorostkar	e82fb5b58f	Fixed spacing ... Replaced tabs with spaces	2016-05-31 08:44:46 +02:00
Todd Gamblin	f3f0122f11	Merge branch 'develop' into features/newarch	2016-05-30 13:54:53 -07:00
Ali Dorostkar	c4d5bd13c7	dealii, Added comment ... Added comment for why step-40 is done differently for dealii 8.4.0 and later	2016-05-30 18:11:34 +02:00
Nicolas Richart	fd345c8ef0	Merge branch 'packages/foam-extend' of github.com:epfl-scitas/spack into packages/foam-extend	2016-05-30 17:04:21 +02:00
Nicolas Richart	9f4e599232	Ignoring the flake8 error for a line too long	2016-05-30 16:58:06 +02:00
Nicolas Richart	08c8d1d1f7	limiting package to foam-extend to start	2016-05-30 16:49:25 +02:00
Nicolas Richart	4122ecbc80	First try at OpenFOAM-extend	2016-05-30 16:49:25 +02:00
Ali Dorostkar	4f591a6fe3	Step-40 test for 8.3.0 and earlier ... Integrated part of step-40 to be tested for earlier versions of dealii	2016-05-30 16:42:24 +02:00
Nicolas Richart	fe79e43459	limiting package to foam-extend to start	2016-05-30 15:46:39 +02:00
Ali Dorostkar	d7e84fe07c	dealii, test for specific version ... Specified that test case “step-40” is only to be run when using dealii version 8.4.0 or later	2016-05-30 14:03:27 +02:00
Glenn Johnson	66aaaa1751	Add a comment regarding the reason for the patch.	2016-05-29 15:30:09 -05:00
Ali Dorostkar	c2ac47235f	additional versions for Dealii ... Included additional versions for Deal.II package.	2016-05-29 13:22:19 +02:00
Glenn Johnson	c16d7c481c	Get glib to compile with gcc-6.1 ... This commit adds a patch to fix the case where gcc-6.1 emits an error for string format literal that was a warning in previous versions of gcc. The patch reference is https://bugzilla.gnome.org/show_bug.cgi?id=761550 Also ran the package file through autopep8.	2016-05-28 23:30:56 -05:00
Mario Melara	33e1dcc476	Adding mock package file for external module	2016-05-28 10:14:40 -07:00
Gregory Becker	9dad7c2ace	re-merged mainline develop	2016-05-27 13:13:19 -07:00
Greg Lee	6dcdb50a3e	Merge branch 'develop' of https://github.com/llnl/spack into develop	2016-05-27 12:44:57 -07:00
Greg Lee	0ae1298d25	updated libdwarf version and dwarfdump build	2016-05-27 12:43:13 -07:00
Adam J. Stewart	dd5a6914f1	Undo changes to flex	2016-05-27 12:56:43 -05:00
Todd Gamblin	f6a0cd1bf8	Merge pull request #973 from eschnett/eschnett/openmpi-verbs ... Auto-detect verbs location	2016-05-27 11:01:44 -05:00
Todd Gamblin	7b063e3e6c	Merge pull request #975 from adamjstewart/features/stream ... Add STREAM benchmark package	2016-05-27 10:59:13 -05:00
Todd Gamblin	dc4ca26441	Merge pull request #992 from davydden/update/dealii ... Update/dealii	2016-05-26 17:39:37 -05:00
Todd Gamblin	96f65479e7	Merge pull request #993 from xjrc/packages/metis ... Update Package : METIS/ParMETIS	2016-05-26 17:37:33 -05:00
Denis Davydov	040c122719	dealii: formatting	2016-05-26 23:00:22 +02:00
Denis Davydov	0036483ded	dealii: don't hardcode blas and mpi; minor fixes to dependencies	2016-05-26 18:07:27 +02:00
Todd Gamblin	76d42b5200	Merge pull request #982 from trws/rust ... Rust	2016-05-25 15:15:51 -05:00
Joseph Ciurej	734fb459a4	Fixing a small bug with metis@4+shared installs on the Mac platform.	2016-05-25 12:27:52 -07:00
Joseph Ciurej	483ec0d762	Added preliminary improved testing code for METIS@:4.	2016-05-24 16:13:52 -07:00
Joseph Ciurej	c9ba73d931	Added staging support and improved error handling for METIS@:4 installs.	2016-05-24 16:05:29 -07:00
Joseph Ciurej	b5d0a38860	Fixed a few linking/testing bugs in the METIS@:4 install method.	2016-05-24 15:03:21 -07:00
Greg Lee	1bca69f272	updated launchmon url and version	2016-05-24 14:54:09 -07:00
Joseph Ciurej	064d3584c0	Updating 'metis' and 'parmetis' to conform to PEP8 standards.	2016-05-24 12:28:05 -07:00
Joseph Ciurej	0ef6843d85	Improved MPI path specification for ParMETIS using PR #893 features.	2016-05-24 12:28:05 -07:00
Joseph Ciurej	9c95ec0b29	Updated and added new versions to the METIS/ParMETIS packages. ... - Added a 'url_for_version' function to the METIS/ParMETIS packages. - Added installation support for METIS@5.0.2 and ParMETIS@4.0.2. - Changed the 'double' variant to 'real64' to make it more consistent with the 'idx64' variant naming. - Removed an unnecessary dependency on gdb.	2016-05-24 12:28:05 -07:00
Denis Davydov	c78349a3a4	octave: fix formatting	2016-05-23 15:08:10 +02:00
Denis Davydov	ce3146e91a	octave: add missing dependencies and update to 4.0.2	2016-05-23 14:50:06 +02:00
Tom Scogland	00de72272d	rust compiler/builder package, new llvm variants	2016-05-22 11:16:00 -07:00
Tom Scogland	425beb4d97	updates for rust-bindgen	2016-05-22 11:16:00 -07:00
Tom Scogland	404b7c7c4f	initial rust support	2016-05-22 11:16:00 -07:00
Nicolas Richart	4c87ef915f	First try at OpenFOAM-extend	2016-05-22 18:55:29 +02:00
Erik Schnetter	09eed08b9c	Auto-detect verbs location	2016-05-20 16:24:48 -04:00
Todd Gamblin	d94972503a	Merge pull request #964 from davydden/update/tbb ... tbb: add 4.4.4; raise InstallError when building 4.4.3 with GCC6.1	2016-05-19 22:44:03 -07:00
Nicolas Richart	2e77cc635e	missing @ in version definition	2016-05-20 00:51:58 +02:00
Nicolas Richart	a233ed2de7	changes scotch package to make he coverage test pass	2016-05-20 00:42:34 +02:00
Nicolas Richart	a51566ec6e	changes to simplify the esmumps variant for version < 6.0.0 + typos corrections, according to the remarks on PR #979	2016-05-20 00:31:12 +02:00
Nicolas Richart	1bf306bbbd	Adding +metis variant to scotch + minor changes	2016-05-19 17:26:44 +02:00
Gregory Becker	9f59c128be	Partial merge of mainline develop	2016-05-18 15:13:40 -07:00
Tom Scogland	29635b7bbd	initial docs for find and flake8 cleanup	2016-05-18 14:04:39 -07:00
Adam J. Stewart	434ff28af4	Add STREAM benchmark package	2016-05-18 15:14:21 -05:00
Todd Gamblin	d391670755	Merge pull request #966 from verolero86/develop ... Add option to disable VT support in openmpi package	2016-05-18 08:36:23 -07:00
Todd Gamblin	78c46aab35	Merge pull request #969 from Rombur/boost ... Add boost 1.61.0	2016-05-18 08:35:51 -07:00
Todd Gamblin	637da63506	Merge pull request #948 from davydden/bugfix/astyle ... astyle: fix filter command which failed on OSX with python 2.7.10	2016-05-18 08:35:01 -07:00
Bruno Turcksin	bbbffe7423	Add boost 1.61.0	2016-05-18 08:51:22 -04:00
Denis Davydov	267666cd97	formatting	2016-05-18 08:35:47 +02:00
Greg Lee	582d01784a	added newdtags variant, default to false (i.e., remove --enable-new-dtags)	2016-05-17 21:18:34 -07:00
Todd Gamblin	d592a1655f	Merge pull request #961 from xjrc/features/flake8-improvements ... Enhancement Proposal: Exempt '@when' Functions from Style Redefinition Errors	2016-05-17 17:00:49 -07:00
Todd Gamblin	502420ceff	Merge branch 'features/cflags' into develop ... Conflicts: lib/spack/spack/cmd/find.py var/spack/repos/builtin/packages/ghostscript/package.py	2016-05-17 16:44:54 -07:00
Denis Davydov	1a187e73ae	tbb: add 4.4.4; raise InstallError when building 4.4.3 with GCC6.1	2016-05-17 22:57:32 +02:00
Todd Gamblin	138307dd0c	Merge pull request #955 from trws/lua-rework ... complete lua rework	2016-05-17 13:21:51 -07:00
Veronica G. Vergara Larrea	6c95a5d496	the right flag here is +, the default behavior is controlled in the variant	2016-05-17 14:37:36 -04:00
Adam J. Stewart	f16228d811	Add more install directories	2016-05-17 13:36:38 -05:00
becker33	3d9c8f4fd4	Merge pull request #952 from davydden/package/sed ... sed: add package	2016-05-17 11:27:57 -07:00
Adam J. Stewart	631cbdbda8	Flake8	2016-05-17 13:22:00 -05:00
Adam J. Stewart	7b9b18f03c	Add HPL benchmark package	2016-05-17 13:14:59 -05:00
Veronica G. Vergara Larrea	471950434e	add a flag to openmpi to allow users to disable vt support	2016-05-17 13:40:01 -04:00
Todd Gamblin	1774c7a7b3	Merge pull request #958 from trws/golang-new ... Golang new	2016-05-17 05:56:06 -07:00
Tom Scogland	80c02ad36a	flake8-related cleanup	2016-05-17 05:30:35 -07:00
Tom Scogland	af4af94203	rework for gopath and bootstrapping	2016-05-17 05:21:11 -07:00
Joseph Ciurej	761c5c8450	Added line limit exemptions for 'variant' and 'version' directives. ... Updated the 'scotch' package to use oneline 'variant' directives.	2016-05-16 12:14:57 -07:00
Joseph Ciurej	52c8bedb9c	Updated style checking to ignore refinition errors for '@when' fxns. ... Updated the Scotch package to conform to PEP8 standards and to test style checking improvements.	2016-05-16 11:09:44 -07:00
Todd Gamblin	a74bc9369b	Merge pull request #953 from citibeth/150514-NetCDFCXX4 ... netcdf-cxx4: Update to latest released version 4.3.0	2016-05-16 10:58:27 -07:00
Elizabeth Fischer	65ff89a0b0	Placate flake8 demands.	2016-05-16 12:53:24 -04:00
Tom Scogland	62dd040a8f	add GOPATH support ... Also fixes flex to depend on bison for its yacc implementation.	2016-05-16 09:30:37 -07:00
Tom Scogland	9780427940	fixing more flake8 errors that only appear on travis...	2016-05-16 05:37:04 -07:00
Tom Scogland	dacedfcc0e	formatting to appease flake8	2016-05-16 05:12:30 -07:00
Tom Scogland	52c359bc77	fix linking issue on ubuntu ... Evidently some readline variants are built with only a dynamic dependency on ncurses, this addresses that problem for such systems.	2016-05-16 03:36:31 -07:00
Todd Gamblin	53df9fbb4f	Merge pull request #959 from davydden/bugfix/doxygen_ghostscript_graphviz ... Bugfix/doxygen ghostscript graphviz	2016-05-16 00:12:59 -07:00
Denis Davydov	0fbf70d95d	indentation fixes	2016-05-15 23:37:09 +02:00
Denis Davydov	459c647bc9	doxygen: add graphviz variant; enable flex and bison on OSX and they build fine	2016-05-15 19:43:01 +02:00
Tom Scogland	71d9911539	go cleanup, adding hub	2016-05-15 10:23:33 -07:00
Tom Scogland	b7aa47a178	remove debug print	2016-05-15 09:52:09 -07:00
Denis Davydov	a045154b5e	graphviz: add missing dependency and fix installation on darwin	2016-05-15 18:34:50 +02:00
Denis Davydov	21d4f3a356	ghostscript: url was changed upstream	2016-05-15 18:33:06 +02:00
Greg Lee	c2ca5f44b4	flake8 fixes	2016-05-15 08:19:55 -07:00
Tom Scogland	2bfa4d7e4f	removing comments ... also randomly changed unnecessary licence block	2016-05-14 22:42:14 -07:00
Tom Scogland	577657b3f7	go rework ... This commit includes: * a new go package that uses gccgo to bootstrap the go toolchain * env support added to Executable * a new Go fetch strategy that uses `go get` to fetch a package and all of its deps * A platinum searcher package that leverages the new go package and fetch strategy	2016-05-14 22:35:55 -07:00
Tom Scogland	0816e9554d	adding go_compiler providers	2016-05-14 18:06:42 -07:00
Tom Scogland	915f91a619	moving go packages to the new path	2016-05-14 18:06:42 -07:00
Tom Scogland	0c33e8ac48	go and a basic go package	2016-05-14 18:06:41 -07:00
Tom Scogland	f50439b990	appeasing the great vengeful flake8 gods	2016-05-14 17:49:06 -07:00
Tom Scogland	0668b6d7ba	changes to appease flake8 for lua-luaposix package	2016-05-14 17:38:32 -07:00
Tom Scogland	21161a60ff	changes to appease flake8 (mostly) for lua package	2016-05-14 17:38:13 -07:00
Glenn Johnson	fffc2d2765	Updated turbomole package file. ... This PR updates the turbomole package file but does not introduce any new funtionality. The updtes are: - use spack interface for subprocess.PIPE and subprocess.Popen - clean up based on flake8 - remove some extra whitespace	2016-05-14 19:33:45 -05:00
Tom Scogland	b5979b13e3	complete lua rework, also module path fix ... This is a complete rework of the lua package, it also allows the environment modification classes to handle paths that are not separated by colons, and uses the support for same in TCL modules as well. The biggest difference is the handling for lua extension packages, which now have their paths set correctly by the lua parent package, and have access to both lua and luarocks as installation tools. See the luaposix package for what should be required for most lua packages after this.	2016-05-14 16:18:26 -07:00
Denis Davydov	c5a35acd67	sed: add package	2016-05-14 22:29:16 +02:00
Elizabeth Fischer	4bf9b168a5	netcdf-cxx4: Update to latest released version 4.3.0	2016-05-14 16:19:10 -04:00
Gregory L. Lee	e3cd0a67d0	address flake8 issues	2016-05-13 16:12:48 -07:00
Gregory L. Lee	e9b71872a8	addressed PR#946 comments from @adamjstewart	2016-05-13 15:16:07 -07:00
Todd Gamblin	4a6ec6377d	Merge pull request #940 from gzagaris/feature/doxygen-version-1.8.11 ... Add doxygen version 1.8.11	2016-05-13 10:10:23 -07:00
Denis Davydov	8db35ab9a2	openblas: use spack_cc/spack_f77 and add a note on compiler mixing	2016-05-13 17:28:30 +02:00
Denis Davydov	67999d1b1c	astyle: fix filter command which failed on OSX with python 2.7.10	2016-05-13 17:13:45 +02:00
George Zagaris	e763eeacdd	fix format in doxygen/package.py	2016-05-12 23:25:10 -07:00
Gregory L. Lee	b8a91db089	Intel software packages and license enhancements	2016-05-12 20:04:45 -07:00
Adam J. Stewart	088dce709e	Make flake8 happy	2016-05-12 16:33:37 -05:00
Adam J. Stewart	ab41fd6692	Add bertini package ... Also add missing dependency. Flex would not build for me without bison. It complained about not being able to find `yacc`.	2016-05-12 16:21:06 -05:00
Adam J. Stewart	03307f91df	Fix bug when compiling elk~mpi	2016-05-12 10:27:05 -05:00
Adam J. Stewart	3526d92660	Indentation fix	2016-05-12 10:27:05 -05:00
Adam J. Stewart	d7020434d9	Use new-ish blas_shared_lib and more flake8 fixes	2016-05-12 10:27:04 -05:00
Adam J. Stewart	e2e72b14b2	Use new openmp_flag and mpi attributes	2016-05-12 10:26:10 -05:00
George Zagaris	3ece0e7b76	Add doxygen version 1.8.11	2016-05-12 00:42:22 -07:00
Todd Gamblin	e7ced54369	Correct LLNL LGPL license template for clarity.	2016-05-11 21:22:25 -07:00
Todd Gamblin	14fe0b8ad2	Merge pull request #558 from adamjstewart/features/pgi ... Add Licensed Software Support	2016-05-11 17:17:47 -07:00
Todd Gamblin	2dc49ee88d	Merge pull request #938 from KineticTheory/pkg-moab ... Provide new package: MOAB	2016-05-11 17:14:05 -07:00
Kelly (KT) Thompson	c5a19b57f7	Clean up formatting.	2016-05-11 16:33:57 -06:00
Gregory Becker	2e1810e3a7	re-merging develop	2016-05-11 15:26:09 -07:00
Kelly (KT) Thompson	8bec127a1d	Attempt to fix formatting issues (flake8).	2016-05-11 14:00:44 -06:00
Kelly (KT) Thompson	9482ce1fce	Remove some extraneous comments.	2016-05-11 12:39:20 -06:00
Kelly (KT) Thompson	e200a41d3d	New package MOAB.	2016-05-11 12:34:33 -06:00
Adam J. Stewart	c043275f1b	Final flake8 changes	2016-05-11 11:46:41 -05:00
Adam J. Stewart	5879f8207f	Flake8 formatting changes	2016-05-11 11:32:08 -05:00
Adam J. Stewart	8ea5e946a2	Add Allinea packages	2016-05-11 11:32:08 -05:00
Adam J. Stewart	8bcb812529	Allow multiple license symlinks	2016-05-11 11:32:08 -05:00
Adam J. Stewart	6906911e85	Allow license files to use different symbols for comments	2016-05-11 11:32:08 -05:00
Adam J. Stewart	240c0643f2	Add NAG Fortran compiler package	2016-05-11 11:27:11 -05:00
Adam J. Stewart	82ce798f41	Bug fix	2016-05-11 11:27:11 -05:00
Adam J. Stewart	2fb128fb34	Add PGI Compiler Package	2016-05-11 11:27:11 -05:00
Denis Davydov	eba264fcd0	fix formatting	2016-05-11 16:11:34 +02:00
Denis Davydov	361b629034	openblas: make unit test more robust by outputing only the solution vector from dgesv	2016-05-11 15:10:13 +02:00
Denis Davydov	809ded74c9	add functions for simple unit tests; refactor openblas to use them	2016-05-11 15:10:13 +02:00
Todd Gamblin	9030541e4b	Merge pull request #929 from epfl-scitas/differentiate_framework_from_packages ... QA : make qa checking less painful	2016-05-11 02:26:07 -07:00
Todd Gamblin	d7847ff768	Use just one flake8 file; mark package.py files to avoid E501 w/url.	2016-05-11 01:16:41 -07:00
alalazo	7d74e209f3	qa : this should still fail due to F821	2016-05-10 19:20:26 +02:00
Todd Gamblin	3e717842c9	Merge pull request #924 from hegner/feature/python-diverse ... Add a few more python packages	2016-05-10 09:44:32 -07:00
Todd Gamblin	836d081bca	Merge pull request #927 from davydden/astyle_fix_ubuntu ... astyle: compile with spack_cxx	2016-05-10 09:43:44 -07:00
alalazo	979b53cab6	qa : modifying 2 packages and a framework file just for the sake of it	2016-05-10 18:33:07 +02:00
Tom Scogland	8fec824484	Merge pull request #769 from epfl-scitas/openmpi_variants ... openmpi : added variants	2016-05-10 09:02:33 -07:00
Denis Davydov	c8d8860742	astyle: fix formatting	2016-05-10 18:01:19 +02:00
Benedikt Hegner	fa44cd5cef	renaming py-Genshi into py-genshi	2016-05-10 17:30:44 +02:00
Benedikt Hegner	f5fb771573	fixing imports; configure commands aren't available at import time yet	2016-05-10 14:52:14 +02:00
Denis Davydov	cd9cdd6410	astyle: compile with spack_cxx	2016-05-10 13:37:57 +02:00
Benedikt Hegner	ad42579f08	addressing coding style rules	2016-05-10 13:17:36 +02:00
Benedikt Hegner	aca5941a0e	Add a few more python packages ... py-Genshi py-astroid py-jinja2 py-logilab-common py-markupsafe py-mistune py-prettytable py-py2neo py-storm	2016-05-10 11:48:18 +02:00
Todd Gamblin	35cf52d182	Merge pull request #707 from dhandeo/visit ... VisIt v2.10.1	2016-05-10 01:40:27 -07:00
Todd Gamblin	a1ebdf63f3	Merge pull request #812 from eschnett/eschnett/hdf5-check-install ... Check the installed HDF5 library for consistency	2016-05-10 01:34:10 -07:00
Todd Gamblin	6c46a5d623	Merge pull request #807 from gartung/fftw-openmp ... FFTW: openmp needs to be an option for clang build	2016-05-10 01:33:13 -07:00
Todd Gamblin	2a38ec4c93	Merge pull request #788 from citibeth/efischer/140416-UpdatePNetCDF ... parallel-netcdf: Updated package	2016-05-10 01:31:57 -07:00
Todd Gamblin	57e495943f	Merge pull request #757 from glennpj/extend_r ... Make R extendable	2016-05-10 01:30:13 -07:00
Todd Gamblin	b1da3664ec	Merge pull request #795 from adamjstewart/features/argcomplete ... Add argcomplete python package	2016-05-10 01:29:08 -07:00
Todd Gamblin	87c772b117	Merge pull request #845 from davydden/openblas_cleanup_unit_test ... openblas: fix a bug and cleanup the unit test	2016-05-10 01:28:49 -07:00
Todd Gamblin	ccccd7b60d	Merge pull request #806 from davydden/openblas_openmp_clang ... openblas: do not use OpenMP with Clang	2016-05-10 01:28:12 -07:00
Todd Gamblin	f21fcb3b88	Merge pull request #798 from jgalarowicz/osscbtf-changes ... Update the main Krell Institute and Argo Navis Tech. packages for MPI…	2016-05-10 01:26:48 -07:00
Todd Gamblin	d2004a186c	Merge pull request #825 from xjrc/packages/scotch ... Update Package : Scotch	2016-05-10 01:26:21 -07:00
Todd Gamblin	0f427ed334	Tweak nccmp to be more spack-compatible. ... - Spack doesn't set F90, but it confuses the nccmp build. Just remove it from the environment. - TODO: should build environment unset this variable?	2016-05-10 01:07:34 -07:00
Todd Gamblin	1cc94a0f79	Merge branch 'efischer/160425-nccmp' of git://github.com/citibeth/spack into citibeth-efischer/160425-nccmp	2016-05-10 01:04:46 -07:00
Todd Gamblin	1568e64f95	Merge pull request #862 from davydden/glib_libxcb_missing_dependencies ... Glib libxcb missing dependencies	2016-05-10 00:57:27 -07:00
Todd Gamblin	5e471719a6	Merge pull request #907 from eschnett/eschnett/binutils-werror ... Disable -Werror	2016-05-10 00:54:24 -07:00
Todd Gamblin	2fde72075f	Merge pull request #918 from hegner/bugfix/bison ... Add missing m4 dependency to bison	2016-05-10 00:54:04 -07:00
Todd Gamblin	e672e10219	Merge pull request #912 from citibeth/efischer/160506-NCO ... nco: Added new package	2016-05-10 00:53:51 -07:00
Todd Gamblin	a996b8aa7f	Merge pull request #919 from jppelteret/bugfix/gmsh-2 ... GMsh: Fix binary linking against its own libraries	2016-05-10 00:53:22 -07:00
Todd Gamblin	813fefbc71	Merge pull request #922 from bcouturi/gdbupdate ... Added gdb 7.11 released on 24 Feb 2016	2016-05-10 00:53:00 -07:00
Todd Gamblin	e3115aa505	Kripke variants.	2016-05-10 00:31:06 -07:00
alalazo	474048ae8b	openmpi : fixes #920, added sqlite as a dependency ... The default for the variant `pmi` has been set to `False` `sqlite` is now a dependency if `+sqlite3`	2016-05-10 09:02:16 +02:00
alalazo	405b04efab	Merge branch 'develop' of https://github.com/LLNL/spack into openmpi_variants	2016-05-10 08:40:26 +02:00
Denis Davydov	b063ab42bf	openblas: fix and cleanup the unit test	2016-05-10 07:33:57 +02:00
Todd Gamblin	2e0ee5404d	clean up Kripke package and dependencies.	2016-05-09 17:14:25 -07:00
Todd Gamblin	92b7534885	Merge branch 'features/kripke' of git://github.com/tzislam/spack into tzislam-features/kripke	2016-05-09 17:00:47 -07:00
Tanzima Z. Islam	23ec6c6bb0	Removed FIXME comments	2016-05-09 16:34:27 -07:00
Tanzima Z. Islam	045e5bd458	Adding a new package: Kripke from the public tar ball	2016-05-09 16:22:07 -07:00
Joseph Ciurej	ceab445b9f	Integrated improvements from PR #893 to remove hardcoded MPI path.	2016-05-09 14:39:42 -07:00
Joseph Ciurej	88d2f6b83a	Enabled the '+esmumps' variant for 'scotch@:6.0.0'. ... Added support for 'scotch@6.0.0'.	2016-05-09 14:19:42 -07:00
Joseph Ciurej	7e6be184bc	Updated and fixed the Scotch package. ... - Fixed a bug that was causing shared library usage to fail when linking with another application. - Updated the repository URL to allow for more general version downloading. - Added installation support for version 5.1.10b. - Cleaned up the installation file to make it a bit easier to follow and modify.	2016-05-09 14:19:42 -07:00
Ben Couturier	3948b082ad	Added gdb 7.11	2016-05-09 22:32:46 +02:00
Jean-Paul Pelteret	970196d825	GMsh: Fix binary linking against its own libraries ... GMsh binary now links against full path name of libraries. This fixes problems, such as `dyld: Library not loaded: libGmsh.2.11.dylib`, when running the executable.	2016-05-09 14:23:07 +02:00
Benedikt Hegner	6e07f46df8	add missing m4 dependency to bison	2016-05-09 14:02:41 +02:00
alalazo	3d7684277a	Merge branch 'openmpi_variants' of github.com:epfl-scitas/spack into openmpi_variants ... Conflicts: var/spack/repos/builtin/packages/openmpi/package.py	2016-05-09 10:56:26 +02:00
alalazo	497ed9f933	Merge branch 'develop' of https://github.com/LLNL/spack into openmpi_variants ... Conflicts: var/spack/repos/builtin/packages/openmpi/package.py	2016-05-09 08:23:30 +02:00
Todd Gamblin	ea408cc0d0	Merge pull request #911 from castillo23/packages/crypto ... add support for crypto version 5.6.1	2016-05-08 14:40:21 -07:00
Todd Gamblin	7145b72482	Merge pull request #914 from trws/packages-leading-to-neovim ... pile of dependencies for neovim, including luajit and libuv	2016-05-08 14:37:51 -07:00
Todd Gamblin	bd63545b0c	Merge pull request #913 from trws/mpi-should-have-pmi ... add pmi support and process managers to the MPIs	2016-05-08 14:36:38 -07:00
Jean-Paul Pelteret	95c7f4fba3	Fixes #915	2016-05-08 16:53:31 +02:00
Denis Davydov	72b91758c9	openblas: raise an error when using +openmp with clang; set +openmp to false by default	2016-05-08 16:51:06 +02:00
Massimiliano Culpo	7d5bb088b4	Merge branch 'develop' of https://github.com/LLNL/spack into openmpi_variants ... Conflicts: var/spack/repos/builtin/packages/openmpi/package.py	2016-05-07 15:08:27 +02:00
Tom Scogland	22afc6dadd	pile of dependencies for neovim, including luajit and libuv	2016-05-06 15:33:26 -07:00
Tom Scogland	7ec28231d9	Merge pull request #906 from adamjstewart/features/xerces-c ... Remove FIXME comments	2016-05-06 15:30:09 -07:00
Tom Scogland	1de110fbba	Merge pull request #794 from adamjstewart/features/jpeg ... Add latest jpeg version	2016-05-06 15:20:43 -07:00
Tom Scogland	7dbf6f97f6	Merge pull request #841 from eschnett/eschnett/hwloc ... Update hwloc to 1.11.3	2016-05-06 15:19:16 -07:00
Tom Scogland	1cf2526a79	Merge pull request #865 from davydden/silver_searcher_dependencies ... the_silver_searcher: add missing dependency	2016-05-06 15:18:50 -07:00
Tom Scogland	86449790fe	add pmi support and process managers to the MPIs	2016-05-06 15:15:40 -07:00
Elizabeth Fischer	c82db2116b	nco: Added new package	2016-05-06 17:42:42 -04:00
Cecilia W. Castillo	7bf724b1d3	add support for crypto version 5.6.1	2016-05-06 14:14:13 -07:00
Tanzima Z. Islam	9f212e7201	Adding a new package file for Kripke	2016-05-06 13:50:34 -07:00
Erik Schnetter	db80c5e97e	Disable -Werror ... This leads to problems if new compiler versions report new kinds of warnings.	2016-05-05 21:11:54 -04:00
Gregory Becker	11b62114bb	versioning the database	2016-05-05 16:58:00 -07:00
Gregory Becker	44f089508b	Changed other packages to fit new syntax	2016-05-05 15:40:22 -07:00
Gregory Becker	d45b2c7947	Fixed openssl to work with new syntax	2016-05-05 15:36:48 -07:00
Adam J. Stewart	1203a14563	Remove tutorial comments	2016-05-05 14:01:21 -05:00
Todd Gamblin	9fb1a9537d	Merge branch 'develop' into features/cflags	2016-05-05 10:49:15 -07:00
Robert D. French	18d2b28c49	Build and install BBCP ... Build and install BBCP Use correct destination for install	2016-05-05 10:58:24 -04:00
Todd Gamblin	10b0cb108c	Merge pull request #893 from davydden/mpi_dependent_env ... Introduce variables for MPI compiler wrappers and document their usage	2016-05-05 01:40:11 -07:00
Denis Davydov	c3bc4d6195	mpich: remove module.mpicc as no formula is using it and it is a duplicate of self.spec.mpicc	2016-05-05 10:28:04 +02:00
Denis Davydov	b12fb7ebc8	mpi: move mpicc/mpicxx/mpifc/mpif77 to setup_dependent_package()	2016-05-05 10:24:32 +02:00
Todd Gamblin	56557f7ff6	Merge pull request #871 from davydden/dealii_updated_dependencies ... dealii: add new dependency -- gsl	2016-05-05 01:00:55 -07:00
Todd Gamblin	4ee1bca1d9	Merge pull request #881 from KineticTheory/pkg-superlu-dist ... + Add version 5.0 download for SuperLU_DIST.	2016-05-05 00:57:24 -07:00
Todd Gamblin	c6a7af3fa7	Merge pull request #885 from davydden/p4est_test_option ... p4est: put back +tests variant	2016-05-05 00:53:58 -07:00
Todd Gamblin	d00680a883	Merge pull request #886 from eschnett/eschnett/openblas-make ... Disable OpenBLAS's overriding of our "make -jN" option	2016-05-05 00:53:47 -07:00
Todd Gamblin	c7f23ca0d6	Merge pull request #887 from adamjstewart/features/openmpi ... Re-add hwloc as a dependency of openmpi	2016-05-05 00:53:10 -07:00
Todd Gamblin	d0acc9827a	Merge pull request #884 from davydden/libtool_missing_dependency ... libtool: add a missing dependency	2016-05-05 00:52:39 -07:00
Todd Gamblin	c1010c3422	Merge pull request #889 from adamjstewart/features/netcdf ... Remove hdf5 ~cxx constraint on netcdf	2016-05-05 00:51:49 -07:00
Todd Gamblin	1181ad2bf0	Merge pull request #891 from adamjstewart/features/gcc ... Add latest version of GCC	2016-05-05 00:51:05 -07:00
Todd Gamblin	053e687e79	Merge pull request #800 from eschnett/eschnett/qthreads ... Add some qthreads patches	2016-05-05 00:49:32 -07:00
Todd Gamblin	7ac8ddde96	Merge pull request #897 from robertdfrench/https-urls-for-subversion ... Build Subversion with HTTP/S support	2016-05-05 00:20:59 -07:00
Todd Gamblin	3dd5b2845b	Merge pull request #900 from eschnett/eschnett/flex ... Update Flex to 2.6.0	2016-05-05 00:11:50 -07:00
Todd Gamblin	55f1cafb70	Merge pull request #899 from LLNL/bugfix/github-808-mrnet ... added git commit for clang support	2016-05-05 00:11:19 -07:00
Dhanannjay 'Djay' Deo	ef202fbe0c	Build static and shared libraries for silo	2016-05-04 22:50:15 -04:00
Dhanannjay 'Djay' Deo	45e77e7739	Correctly extend std_cmake_args	2016-05-04 22:49:47 -04:00
Dhanannjay 'Djay' Deo	1785de0f31	remove hdf5 which is silo actually a silo dependency	2016-05-04 22:08:01 -04:00
Erik Schnetter	27de2a42d9	Update Flex to 2.6.0	2016-05-04 20:27:58 -04:00
Greg Lee	514a8c737a	added git commit for clang support	2016-05-04 16:38:43 -07:00
Dhanannjay 'Djay' Deo	32f7b06a36	Add version 2.10.2	2016-05-04 18:14:38 -04:00
Patrick Gartung	67d64b804f	more succinctly	2016-05-04 23:53:10 +02:00
Robert.French	bfe009f98d	Subversion uses serf for http repos ... Add Scons package Add serf package Subversion uses serf for http repos	2016-05-04 16:16:36 +00:00
Denis Davydov	796bf5f85c	mvapich2: add self.spec.[mpicc|mpicxx|mpifc|mpif77]	2016-05-04 17:33:19 +02:00
Patrick Gartung	7eb463a66e	only fail when it is apples clang	2016-05-04 15:05:56 +02:00
Denis Davydov	f417b1cf90	p4est: use mpicc,mpicxx,mpifc,mpif77 compiler variables instead of hardcoding names	2016-05-04 11:51:45 +02:00
Denis Davydov	c3317819cb	mpi: add self.spec.[mpicc|mpicxx|mpifc|mpif77] to avoid hardcoding MPI wrappers names	2016-05-04 10:37:52 +02:00
Adam J. Stewart	88fa9084e2	Add latest version of GCC	2016-05-03 15:58:14 -05:00
Adam J. Stewart	a3d2d0cd22	Add latest OpenSSL versions	2016-05-03 15:44:23 -05:00
Adam J. Stewart	eaa45d8a9a	Remove hdf5 ~cxx constraint on netcdf	2016-05-03 13:28:38 -05:00
Kelly (KT) Thompson	f4260da1c2	Mark SuperLU_DIST version 4.3 as the preferred version since petsc and trilinos are not tested with 5.0.	2016-05-03 12:05:35 -06:00
Adam J. Stewart	51c6867f72	Re-add hwloc as a dependency of openmpi	2016-05-03 10:30:35 -05:00
Erik Schnetter	40d578be95	Disable OpenBLAS's overriding of our "make -jN" option	2016-05-03 10:38:05 -04:00
Denis Davydov	0583bc9859	p4est: put back +tests variant	2016-05-03 16:21:10 +02:00
Denis Davydov	98f8192bde	libtool: add a missing dependency	2016-05-03 15:15:55 +02:00
Kelly (KT) Thompson	89621faaea	+ Add version 5.0 download for SuperLU_DIST.	2016-05-02 20:21:03 -06:00
David Poliakoff	e74cc0df27	Updated docstring	2016-05-02 15:53:43 -07:00
David Poliakoff	afef04bb54	Added cnmem package`	2016-05-02 15:49:37 -07:00
David Poliakoff	179d308fe0	Added a package for the RAJA system	2016-05-02 14:32:57 -07:00
Todd Gamblin	372a455bea	Merge pull request #873 from jppelteret/bugfix/paradiseo ... Add extra dependencies for Paradiseo	2016-05-02 09:57:30 -07:00
Todd Gamblin	aa7444cd3d	Merge pull request #870 from jppelteret/bugfix/glm ... Add missing dependency for glm	2016-05-02 09:57:11 -07:00
Todd Gamblin	4fecf33416	Merge pull request #877 from vishalkenchan/develop ... bugfix: missing dependencies (m4) added for netcdf and autoconf	2016-05-02 09:56:44 -07:00
Denis Davydov	2eb4248f90	dealii: fix a bug where P4EST_DIR was unconditionally requested	2016-05-02 18:53:13 +02:00
Denis Davydov	cde1d18399	dealii: add new dependency -- gsl	2016-05-02 18:53:13 +02:00
Todd Gamblin	999dda8f83	Merge pull request #708 from adamjstewart/fixes/qt ... Prevent use of system GTK+	2016-05-02 09:41:51 -07:00
Todd Gamblin	568800c045	Merge pull request #875 from jppelteret/features/adol-c ... Added Adol-C package	2016-05-02 09:30:23 -07:00
Adam J. Stewart	7255f6969b	Merge branch 'develop' into features/argcomplete	2016-05-02 11:29:52 -05:00
Adam J. Stewart	17fa1b5007	Un-fix version 3	2016-05-02 11:28:20 -05:00
Adam J. Stewart	61e5ee5d63	Prevent use of system GTK+	2016-05-02 11:28:20 -05:00
Massimiliano Culpo	cfc25d0a92	Merge branch 'develop' into openmpi_variants	2016-05-02 18:26:05 +02:00
Adam J. Stewart	9c3d8dae57	Add latest jpeg version	2016-05-02 11:17:38 -05:00
Adam J. Stewart	4e2154e58f	Add argcomplete python package	2016-05-02 11:16:29 -05:00
Adam J. Stewart	c110865bf2	Remove OpenMPI dependency on hwloc	2016-05-02 11:06:33 -05:00
Adam J. Stewart	b99c8b641a	Add hydra package	2016-05-02 11:06:33 -05:00
Vishal Boddu	e111add17f	missing dependencies (m4) added for netcdf and autoconf	2016-05-02 14:31:02 +02:00
Jean-Paul Pelteret	5ae7276682	Fixes to installation with OpenMP (tested) and execution of test-suite	2016-05-02 11:01:14 +02:00
Jean-Paul Pelteret	631e235ef3	Added Adol-C package	2016-05-01 11:07:42 +02:00
Jean-Paul Pelteret	c33ffbae04	Add extra dependencies for Paradiseo.	2016-04-30 22:25:14 +02:00
Patrick Gartung	83108f815c	Error out if +openmp used with OS X clang	2016-04-30 13:18:32 -05:00
Patrick Gartung	f8c14e1d98	Make openmp variant false by default.	2016-04-30 13:18:32 -05:00
Patrick Gartung	a588a1fd84	openmp needs to be an option for clang build	2016-04-30 13:18:32 -05:00
Jean-Paul Pelteret	8fc43046eb	Add missing dependency for glm	2016-04-30 12:11:10 +02:00
Denis Davydov	3ad71700dd	the_silver_searcher: add missing dependency	2016-04-29 09:52:49 +02:00
Denis Davydov	176b9febb4	libxcb: add missing dependencies	2016-04-29 09:06:15 +02:00
Denis Davydov	17f696d3b3	glib: add missing dependencies	2016-04-29 09:05:54 +02:00
Todd Gamblin	1b731e525f	Merge pull request #703 from epfl-scitas/fixes/openssl_external ... fix : no warning when installing 'openssl@external'	2016-04-28 10:25:35 -07:00
Todd Gamblin	b75a3e112b	Merge pull request #855 from citibeth/efischer/160427-OpenblasFix ... openblas: Added +fpic variant to package.	2016-04-28 10:19:36 -07:00
Gregory Becker	ae5198e5e7	Merged in current develop to cflags 042716	2016-04-27 19:38:51 -07:00
Elizabeth F	71ca837ada	Add '+fpic' variant.	2016-04-27 20:36:41 -04:00
Elizabeth F	62d806d512	hdf5: Set preferred version, so as to not break NetCDF (for now).	2016-04-27 19:03:26 -04:00
Elizabeth F	ee6a75c9b5	Added missing -lpthread to OpenBLAS check. ... See: https://github.com/xianyi/OpenBLAS/wiki/faq#static_link	2016-04-27 18:44:54 -04:00
Todd Gamblin	92afa52eec	Merge pull request #804 from jppelteret/features/paradiseo ... Added package for Paradiseo.	2016-04-26 13:00:09 -07:00
Todd Gamblin	d1a9328793	Merge pull request #824 from adamjstewart/features/ior ... Add IOR benchmark package	2016-04-26 12:48:57 -07:00
Erik Schnetter	55d339194d	Update hwloc to 1.11.3	2016-04-26 15:29:16 -04:00
Todd Gamblin	1d2916da8c	Merge pull request #829 from davydden/openblas_unit_test ... openblas: a small unit test to make sure Lapack symbols are compiled	2016-04-26 10:47:35 -07:00
Todd Gamblin	7fc69a6b51	Merge pull request #838 from davydden/dealii_dependencies ... dealii: add missing dependencies	2016-04-26 10:34:00 -07:00
Todd Gamblin	237c843621	Merge pull request #837 from davydden/p4est_dependencies ... p4est: add missing dependencies	2016-04-26 10:33:46 -07:00
Todd Gamblin	ef0fefc506	Merge pull request #836 from davydden/astyle_fix ... astyle: fix installation of the binary	2016-04-26 10:33:24 -07:00
Todd Gamblin	9fb514ff81	Merge pull request #828 from glennpj/csvkit ... Add py-csvkit package	2016-04-26 10:32:27 -07:00
Glenn Johnson	dfc0efa8ed	Put f2py of py-numpy in python ignore list. (#827) ... There are many python packages that depend on py-numpy. Each one of those will have a copy of f2py that will need to be put in the ignore list for activation. Thise PR adds f2py to the ignore list in the python package.py file so that it does not have to be done for each package that depends on py-numpy. This follows the model of what is done for py-setuptools. This PR also removes the f2py ignore expression for python packages that were using it as it is no longer needed in the individual packages.	2016-04-26 10:32:14 -07:00
Glenn Johnson	b56bfcea96	Add the turbomole package. (#826) ... * Add the turbomole package. This package has three modes of operation that need to be selected independently. This is handled with spack vaiants. Turbomole has a builtin MPI implementation so it does not need to depend on an mpi provider when using the +mpi variant. * Whitespace cleanup.	2016-04-26 10:31:48 -07:00
Joseph Ciurej	8ec5e81186	Update Package : Zoltan (#833) ... * Added preliminary implementations for the debug and shared variants. * Fixed a few problems with the '+shared' variant of the Zoltan package. Added support for a few more important Zoltan package versions. * Fixed a minor compiler incompatibility issue with the '+shared+mpi' variants.	2016-04-26 10:24:36 -07:00
jppelteret	8e227f603d	Fix: Add missing dependencies for gmp and eigen (#830) ... See https://groups.google.com/forum/#!topic/spack/9JMDwafjBUs	2016-04-26 10:01:09 -07:00
Geoffrey Oxberry	f70046e6b7	MFEM version 3.1 (#749) ... MFEM is a free, lightweight, scalable C++ library for finite element methods. Includes lapack, hypre, metis, suite-sparse, mpi variants & tests for serial and parallel versions.	2016-04-26 10:00:24 -07:00
Denis Davydov	0ff4120692	dealii: add missing dependencies	2016-04-26 15:06:21 +02:00
Denis Davydov	8a45aa4185	p4est: add missing dependencies	2016-04-26 12:52:49 +02:00
Denis Davydov	168f9c46ea	astyle: fix installation of the binary	2016-04-26 09:18:39 +02:00
Jean-Paul Pelteret	17b7305086	Added package for Paradiseo.	2016-04-26 09:12:27 +02:00
Elizabeth Fischer	1a585a6c74	Added nccmp package	2016-04-25 22:25:08 -04:00
Denis Davydov	dd37959899	output with new lines	2016-04-25 16:21:19 +02:00
Denis Davydov	42be50d10b	add a test/output pair	2016-04-25 13:53:41 +02:00
Denis Davydov	b81cb554f5	openblas: a small unit test to make sure Lapack symbols are compiled	2016-04-25 13:30:20 +02:00
Glenn Johnson	2b7b7f6d97	Reformat description text.	2016-04-24 18:11:18 -05:00
Glenn Johnson	4e671c54ee	Reformat the description.	2016-04-24 18:06:51 -05:00
Glenn Johnson	797af2e80f	Add py-csvkit package ... This adds the py-csvkit package and needed dependencies for working with csv files.	2016-04-24 17:39:49 -05:00
Adam J. Stewart	a7ffffc336	Change homepage, explicitly disable	2016-04-24 17:14:33 -05:00
Adam J. Stewart	22e4ee5604	Add OSU Micro-Benchmarks package (#822) ... * Add OSU Micro-Benchmarks package * Add workaround for GCC bug	2016-04-23 13:29:47 -07:00
Ben Boeckel	e32416430c	Update git (#819) ... * git: update to 2.8.0 final and add 2.8.1 * git: hard-depend on curl and expat HTTP-based cloning is very prevalent now.	2016-04-23 12:18:58 -07:00
Elizabeth Fischer	248248c6b2	Added package: NCView (#791) ... * ncview: Added package * Removed FIXMEs	2016-04-23 12:15:53 -07:00
Erik Schnetter	4e062d86b4	Refine wget's OpenSSL configuration options (#786)	2016-04-23 12:15:32 -07:00
Joseph Ciurej	d701d2ccf3	Updated the Swig package file to include versions for all of the popular Swig releases. (#790)	2016-04-23 12:15:14 -07:00
Glenn Johnson	62d175c984	This commit explicitly sets libdir. This is necessary because different ... systems use different defaults.	2016-04-23 12:30:34 -05:00
Erik Schnetter	0cbaecca60	Don't use subprocess module	2016-04-22 21:52:11 -04:00
Adam J. Stewart	e7d2fa7084	Add IOR benchmark package	2016-04-22 12:30:24 -05:00
Ben Boeckel	5c4bb69af9	xerces-c: update to 3.1.3 (#811) ... The 3.1.2 tarball seems to have gone missing. Also switch to using bz2 rather than gz to reduce the download size.	2016-04-21 19:29:20 -07:00
Denis Davydov	ef9347bcfb	dealii: set DEAL_II_DIR when loading a module (#816)	2016-04-21 19:25:17 -07:00
Erik Schnetter	867e1333d0	Remove outdated comment	2016-04-20 17:01:26 -04:00
Erik Schnetter	7c155f7456	Check the installed HDF5 library for consistency	2016-04-20 16:33:59 -04:00
Erik Schnetter	1acb2a1a09	Add some qthreads patches	2016-04-19 16:45:05 -04:00
Jim Galarowicz	44321c5c24	Update the main Krell Institute and Argo Navis Tech. packages for MPI variant support, get source from github not sourceforge, tested external package usage, and general package clean-up	2016-04-18 16:46:15 -07:00
Kelly Thompson	dd84a57580	+ On some systems, Dia also requires intltool. (#768)	2016-04-17 07:15:47 +02:00
Ben Boeckel	63bade7a0c	metis: fix OS X install (#764) ... Without this, the binaries use relative paths for loading which causes them to not be found when running binaries. Not sure why the existing hack wasn't working, but this fixes it the proper way.	2016-04-17 07:15:07 +02:00
Erik Schnetter	375de085e2	Make PAPI build on Darwin (#772) ... * Make PAPI build on Darwin - don't use <malloc.h> - run install_name_tool * Use fix_darwin_install_name	2016-04-17 07:14:34 +02:00
Erik Schnetter	fb4f361cd0	Update to version 4.1.0 (#785)	2016-04-17 07:12:52 +02:00
Kelly Thompson	523be30974	+ Add CMake version 3.5.2. (#787)	2016-04-17 07:11:19 +02:00
Erik Schnetter	a25e33d96e	Create lib directory	2016-04-17 06:50:15 +02:00
Elizabeth F	e03e87b791	1. Added variants to choose language interfaces. 2. Now produces relocatable code (+fpic) by default	2016-04-16 00:57:57 -04:00
Todd Gamblin	69f8d8fa7a	Merge pull request #783 from adamjstewart/features/elk ... Add Elk package	2016-04-14 18:34:03 +02:00
Adam J. Stewart	cf1914fc00	Also install species directory	2016-04-14 10:18:06 -05:00
Todd Gamblin	a73b7052c9	Merge branch 'osx-fixes' of git://github.com/mathstuf/spack into mathstuf-osx-fixes	2016-04-14 15:25:24 +02:00
Todd Gamblin	9e456acbab	Merge pull request #779 from LLNL/bugfix/binutils-deps ... binutils depends on flex and bison.	2016-04-14 15:23:35 +02:00
Todd Gamblin	01fab24c15	binutils depends on flex, bison, and m4	2016-04-14 11:47:35 +02:00
Todd Gamblin	d6a232dbe0	Merge pull request #767 from mathstuf/paraview-fixes ... Paraview fixes	2016-04-14 11:29:46 +02:00
Todd Gamblin	f8543f7755	Merge pull request #780 from adamjstewart/fixes/hdf5 ... fortran2003 option has been removed from HDF5	2016-04-14 11:20:11 +02:00
Todd Gamblin	420a61491d	Merge pull request #781 from jgalarowicz/qt3-fixes ... Fix compile issues with new libpng versions and qt3 builds by using a…	2016-04-14 09:46:58 +02:00
Todd Gamblin	2bffd569d7	Merge pull request #782 from jgalarowicz/update-mrnet ... Update mrnet with new version source recognition and add krell related patch controlled by a variant.	2016-04-14 09:45:40 +02:00
Jim Galarowicz	f9aafeee1e	Loosen the boost requirement from a specific version that was specified in my initial commit.	2016-04-13 21:58:57 -07:00
Jim Galarowicz	2cf9ebc62c	Fix compile issues with new libpng versions and qt3 builds by using an older version of libpng. In libpng, make older versions available.	2016-04-13 15:00:45 -07:00
Adam J. Stewart	5717cb981e	fortran2003 option has been removed from HDF5	2016-04-13 15:03:03 -05:00
Todd Gamblin	2fe9bfcd82	Merge pull request #773 from eschnett/eschnett/julia ... Update Julia	2016-04-13 12:02:19 +02:00
Todd Gamblin	c96dd43174	Merge pull request #776 from adamjstewart/features/pnetcdf ... Add latest version of PnetCDF	2016-04-13 01:29:37 +02:00
Tom Scogland	04392babca	add setuptools version 20.7.0	2016-04-12 15:59:20 -07:00
Todd Gamblin	7acc7c4dae	Merge pull request #712 from Rombur/fix_pysetuptools ... Replace py-setuptools version 20.5 by version 20.6.7	2016-04-13 00:54:51 +02:00
Adam J. Stewart	abe744c5a0	Add latest version of PnetCDF	2016-04-12 16:53:45 -05:00
Adam J. Stewart	01f2dd03d5	Also install examples directory	2016-04-12 16:51:27 -05:00
Adam J. Stewart	cb6c6fb374	Add elk package	2016-04-11 16:28:30 -05:00
Erik Schnetter	882e2e42cf	Merge branch 'develop' into eschnett/julia	2016-04-11 15:40:27 -04:00
Erik Schnetter	df7e3f8635	Correct version dependency for OpenBLAS patch	2016-04-09 09:58:48 -04:00
Massimiliano Culpo	6cffac79bd	openmpi : added a few variants	2016-04-09 11:21:29 +02:00
Ben Boeckel	20b9f34b5c	paraview: use internal hdf5 ... Spack's HDF5 is too new. Rather than forcing everything in a ParaView chain to use older HDF5, use the internal one until ParaView is patched properly.	2016-04-08 15:09:02 -04:00
Ben Boeckel	6e56ba9f24	paraview: use internal netcdf ... VTK needs to learn to cope with netcdf being split like this.	2016-04-08 15:08:29 -04:00
Ben Boeckel	3a4aac0213	paraview: use the right cmake variables	2016-04-08 15:08:09 -04:00
Erik Schnetter	f461b99722	Building OpenBLAS requires recent binutils	2016-04-08 14:31:40 -04:00
Ben Boeckel	9eaf735bcd	py-setuptools: add 20.6.7	2016-04-08 12:03:45 -04:00
Ben Boeckel	dcd6b19348	py-setuptools: sort versions	2016-04-08 12:03:36 -04:00
Ben Boeckel	6c409d6b92	py-matplotlib: depend on pkg-config ... On OS X, freetype isn't found by default, but pkg-config can.	2016-04-08 12:03:05 -04:00
Ben Boeckel	7d19154e18	pkg-config: use the internal glib ... glib requires pkg-config itself, so on machines without pkg-config, there's a bootstrapping problem.	2016-04-08 12:01:28 -04:00
Todd Gamblin	e73caad0d7	Merge pull request #747 from KineticTheory/pkg-global ... Package global depends on ncurses	2016-04-07 00:20:15 -07:00
Glenn Johnson	8a7f34665b	Make sure base bioconductor package can be installed.	2016-04-06 23:05:49 -05:00
Geoffrey Oxberry	bbd328d307	metis 5: fix download url ... Spack picks up the wrong download for metis 5.1.0 from parsing the url field for metis 4.0.3. Add an explicit url field to fix this bug.	2016-04-06 16:58:48 -07:00
Todd Gamblin	4437bae16d	Merge pull request #750 from goxberry/metis-4.0.3 ... metis 4.0.3	2016-04-06 16:05:02 -07:00
Todd Gamblin	cac819766e	Merge pull request #755 from adamjstewart/features/bash ... Add bash package	2016-04-06 16:02:10 -07:00
Todd Gamblin	25d48f700c	Merge pull request #752 from KineticTheory/pkg-netlib-lapack ... Second attempt at PR#741	2016-04-06 16:01:33 -07:00
Geoffrey Oxberry	ddaba07d82	metis 4.0.3 ... Add version 4.0.3 to metis package. Attempted to implement reasonable versions of all variants declared for metis@5.1.0; some of these do not have analogues in metis@4.0.3, and errors are raised accordingly. Also updated dependencies of packages with depends_on('metis') to depends_on('metis@5:') to ensure that these packages still build.	2016-04-06 15:49:59 -07:00
Glenn Johnson	32779ab1f6	Add r-filehash to test version naming.	2016-04-06 17:02:34 -05:00
Massimiliano Culpo	c113d390a7	mvapich2 : MPI compiler wrapper will use spack compilers during the installation phase ... mpich : fixed wrong function signature	2016-04-06 23:51:47 +02:00
Glenn Johnson	fbabfc593d	Make R extensable and add a couple of packages for verification. ... Added R as a build system so that the create template will have the correct configure line. Added a regex for version parsing as the R URLs are a little odd.	2016-04-06 16:44:22 -05:00
Adam J. Stewart	380a2b23e6	Add bash package	2016-04-06 15:57:03 -05:00
Kelly (KT) Thompson	71e9f1ab8d	+ I am resubmitting this proposed change because it was accidentally ... overwritten. These modifications were accepted as PR#741 but somehow I clobbered them when PR#742 was merged. There was some unintentional overlap in my local repository that I didn't straighten out before pushing.	2016-04-06 09:52:09 -06:00
Todd Gamblin	3c8e055ed0	Merge pull request #751 from davydden/openblas_fix_compiler ... openblas: provide basename of compilers to avoid issues with detectio…	2016-04-06 02:47:37 -07:00
Denis Davydov	9b3c7b8afa	openblas: provide basename of compilers to avoid issues with detection of Fortran	2016-04-06 10:55:59 +02:00
Dhanannjay 'Djay' Deo	071548a62f	Building VisIt with silo	2016-04-05 23:16:57 -04:00
Dhanannjay Deo	f221f64509	Add variant for shared library	2016-04-05 23:11:18 -04:00
Dhanannjay Deo	c3c70cf704	Install lite pdb headers	2016-04-05 23:11:18 -04:00
Kelly (KT) Thompson	340ad44aab	Merge remote-tracking branch 'upstream/develop' into pkg-exuberant-ctags	2016-04-05 13:31:06 -06:00
Dhanannjay Deo	2e05830eb1	Constrain to vtk6.1 qt4.8.6 and opengl1 rendering backend	2016-04-05 15:12:06 -04:00
Dhanannjay Deo	872f049b30	create visit package	2016-04-05 15:12:06 -04:00
Kelly (KT) Thompson	21ad5162c4	+ Global requires ncurses.	2016-04-05 11:53:37 -06:00
Todd Gamblin	8ef9d68542	Merge pull request #726 from citibeth/efischer/160402-Qt ... Removed useless url in qt	2016-04-05 10:51:12 -07:00
Jim Galarowicz	0ebb192b2f	Update the MRNet package with the latest source and patch related to the krell tools needs. Also, reorder the list of version to match with the spack standard: newest to oldest.	2016-04-05 10:36:20 -07:00
Jim Galarowicz	ffed252df4	Merge remote-tracking branch 'upstream/develop' into develop	2016-04-05 10:31:41 -07:00
Erik Schnetter	a87ae5173f	Update Julia ... - allow checking out the master branche - add dependencies requires by important Julia package - add OpenBLAS patch	2016-04-05 09:05:46 -04:00
Todd Gamblin	faf4a1e370	Merge pull request #740 from glennpj/scikit ... Scikit	2016-04-04 23:11:04 -07:00
Todd Gamblin	b09d87970c	Merge pull request #742 from KineticTheory/pkg-dia ... Provide dia	2016-04-04 23:09:41 -07:00
Todd Gamblin	cefcbfea8e	Merge pull request #743 from eschnett/eschnett/netlib-scalapack ... Require cmake	2016-04-04 23:09:24 -07:00
Todd Gamblin	c010a6f8b0	Merge pull request #728 from eschnett/eschnett/hdf5-1.10 ... Update HDF5 to 1.10.0	2016-04-04 23:09:08 -07:00
Glenn Johnson	c546b75443	Add missing dependency on py-setuptools for ... - py-dask - py-decorator	2016-04-04 19:23:48 -05:00
Jim Galarowicz	9d2ef9f453	Merge remote-tracking branch 'upstream/develop' into develop	2016-04-04 17:07:53 -07:00
Glenn Johnson	2b3a8a4a5a	Add missing dependencies.	2016-04-04 19:01:44 -05:00
Erik Schnetter	aaf2830b8b	Require cmake	2016-04-04 19:40:05 -04:00
Kelly (KT) Thompson	48d70d960c	+ Provide dia, a program for drawing structured diagrams.	2016-04-04 17:11:04 -06:00
Todd Gamblin	3404a61ebf	Merge pull request #714 from goxberry/ipopt-3.12.4 ... Add ipopt v3.12.4 package.	2016-04-04 13:42:37 -07:00
Todd Gamblin	2fd2a5403f	Merge pull request #711 from goxberry/mumps-add-libexec ... Add mpiseq headers to MUMPS installation (was: Add libexec dir to MUMPS installation)	2016-04-04 13:41:55 -07:00
Kelly (KT) Thompson	cd3086f78d	+ Since CBLAS is only provided in 3.6.0 or later, modify package.py to on refer to CBLAS when the latest release is requested.	2016-04-04 14:35:09 -06:00
Glenn Johnson	9c60f122a6	New package - py-scikit-image (http://scikit-image.org/).	2016-04-04 14:02:55 -05:00
Glenn Johnson	8404f084c8	New package - py-networkx (https://networkx.github.io/).	2016-04-04 14:02:55 -05:00
Glenn Johnson	a10ab78e28	New package - py-decorator (https://github.com/micheles/decorator).	2016-04-04 14:02:55 -05:00
Glenn Johnson	3a4210e9d7	New package - py-dask (http://dask.pydata.org).	2016-04-04 14:02:55 -05:00
Glenn Johnson	d0ca3952a3	Add version 0.17.1 of scikit-learn.	2016-04-04 14:02:54 -05:00
Erik Schnetter	badf5b047b	Calculate version string in a function	2016-04-04 14:42:36 -04:00
Jim Galarowicz	6ebed7a2a6	Add release 9.1.0 recognition to the Dyninst API package file.	2016-04-04 11:23:51 -07:00
Todd Gamblin	220fb068aa	Merge pull request #724 from davydden/metis_suitesparse_dealii ... Metis and suitesparse fixes	2016-04-04 11:20:53 -07:00
Todd Gamblin	5084130e71	Merge pull request #715 from citibeth/efischer/160401-EnvironmentModules ... Added Environment Modules	2016-04-04 10:41:54 -07:00
Jim Galarowicz	e0b9f79b9b	Add changes that remove unsupported libraries from the boost build libraries list based on the boost version numbers. Libraries that are removed include: log - for versions of boost 1.53.0 and older - :atomic - for versions of boost 1.52.0 and older - :locale for versions of boost 1.49.0 and older - :chrono - for versions of boost 1.48.0 and older - and :random - for versions of boost 1.44.0 and older.	2016-04-04 10:33:03 -07:00
Todd Gamblin	a8b856432a	Merge pull request #716 from citibeth/efischer/160401-TclTk ... Fixed TCL/Tk	2016-04-04 10:24:11 -07:00
Todd Gamblin	266f64d848	Merge pull request #725 from citibeth/efischer/160402-NetCDFCXX ... Added deprecation warning to netcdf-cxx	2016-04-04 10:18:15 -07:00
Todd Gamblin	2d49842cd1	Merge pull request #730 from citibeth/efischer/160403-PyPillow ... [WIP] py-pillow: Updated for variants	2016-04-04 10:15:59 -07:00
Todd Gamblin	bd005b6ba6	Merge pull request #727 from glennpj/sympy ... Added version 1.0 of sympy.	2016-04-04 10:14:13 -07:00
Todd Gamblin	6755c397c9	Merge pull request #729 from citibeth/efischer/160403-LibxcbDependency ... libxcb: Added comments on two dependencies Spack does not yet know ho…	2016-04-04 10:13:45 -07:00
Todd Gamblin	932ed6b280	Merge pull request #731 from citibeth/efischer/160403-GitDependency ... git: added comment about newly discovered dependency	2016-04-04 10:13:15 -07:00
Todd Gamblin	a43cb60097	Merge pull request #733 from citibeth/efischer/160403-DbusDependency ... dbus: Added missing dependency (expat)	2016-04-04 10:12:47 -07:00
Bruno Turcksin	7197f15783	Add version 2.6.7 of py-setuptools	2016-04-04 10:15:00 -04:00
alalazo	d375ddadc4	openssl : reads newer version from ftp (recommended on openssl web-site)	2016-04-04 12:25:13 +02:00
Todd Gamblin	bb968fc5a2	Fix #620, Resolve #664. Fix issues with build environment. ... - Also added better regression tests for build environment.	2016-04-04 02:52:38 -07:00
Denis Davydov	131d34f318	suite-sparse: temporary disable TBB due to linking errors	2016-04-04 09:05:27 +02:00
Elizabeth F	14f073d410	py-pillow: Updated for variants, but still having trouble getting it to use Spack-supplied libjpeg.	2016-04-03 21:42:55 -04:00
Elizabeth F	0bf61ad57b	libxcb: Added comments on two dependencies Spack does not yet know how to build.	2016-04-03 21:42:40 -04:00
Elizabeth F	2809fe95db	git: added comment about newly discovered dependency	2016-04-03 21:42:29 -04:00
Elizabeth F	c3f7b035fd	dbus: Added missing dependency (expat)	2016-04-03 21:42:09 -04:00
citibeth	79836520d9	Fixed up to work on a machine without any system-install tcl.	2016-04-03 21:38:29 -04:00
Denis Davydov	e0ff3f16cc	dealii: blacklist boost	2016-04-03 19:41:51 +02:00
Elizabeth Fischer	40c279ef95	Fixed evil non-ASCII quotes	2016-04-03 00:10:22 -04:00
Erik Schnetter	e436f84244	Update HDF5 to 1.10.0	2016-04-02 20:22:26 -04:00
Glenn Johnson	c952c0ca16	Added version 1.0 of sympy. Beginning with this version, sympy requires ... the mpmath package. The py-mpmath package is added in this PR to accommodate that.	2016-04-02 15:50:20 -05:00
citibeth	1c483ffe4e	Merged the best of two Spack packages for Environment Modules. ... Named "environment-modules" to be consistent with Fedora and Ubuntu repositories. See d96ea5b for original packages/modules/package.py	2016-04-02 13:09:56 -04:00
citibeth	9f7db44574	Removed useless url in qt	2016-04-02 12:58:37 -04:00
citibeth	2126683203	Added deprecation warning to netcdf-cxx	2016-04-02 12:55:34 -04:00
Denis Davydov	adccd18015	dealii: add extra test for Petsc+Metis	2016-04-02 12:04:18 +02:00
Denis Davydov	a88c6da9ac	suite-sparse: fix a bug where interla metis was used; add TBB variant	2016-04-02 12:04:07 +02:00
Denis Davydov	624b576b1e	metis: fix compilation with Clang 7.3.0, add tests	2016-04-02 12:03:57 +02:00
Geoffrey Oxberry	edf6e9ceac	Add ipopt v3.12.4 package. ... Add package for the nonlinear programming solver IPOPT. This commit depends on the changes made in GitHub PR #711, since IPOPT requires the headers that correspond to the fake MPI implementation in sequential MUMPS.	2016-04-01 18:37:08 -07:00
Geoffrey Oxberry	71ffe2f1c4	mumps: install mpiseq headers for '~mpi' ... Prior to this commit, spack installs a library called `libmpiseq` into `spec['mumps'].prefix.lib` when it builds MUMPS without MPI. However, it does not also install the headers corresponding to this library, so it is impossible to compile source files that depend on function calls implemented in this library. This commit fixes this problem by installing these headers, which are needed by packages (e.g., IPOPT) that depend on these headers.	2016-04-01 18:26:25 -07:00
Elizabeth F	e4f7b78e9b	Fixed tk, and used uverridden url_for_version().	2016-04-01 16:38:02 -04:00
Elizabeth F	cfd5e69b81	Added Environment Modules package.	2016-04-01 15:28:03 -04:00
Elizabeth F	d4e6b15d98	Fixed TCL/Tk	2016-04-01 15:25:01 -04:00
Todd Gamblin	f5a77d3958	Merge pull request #709 from xjrc/packages/zoltan ... Add Package : Zoltan	2016-03-31 15:16:37 -07:00
Joseph Ciurej	09d657e98e	Fixed the MPI variant for the 'zoltan' package.	2016-03-31 14:36:32 -07:00
Joseph Ciurej	b1b94d2b7f	Added the initial version of the 'zoltan' package.	2016-03-31 13:59:49 -07:00
Todd Gamblin	d0c8245a58	Merge pull request #685 from gartung/add-modules-package ... add modules package and have setup script find it if built	2016-03-31 12:15:11 -07:00
Todd Gamblin	c5f3475f48	Merge pull request #704 from adamjstewart/features/qt-url ... Add url_for_version function and gtk variant	2016-03-31 11:55:27 -07:00
Todd Gamblin	220c72d67f	Merge branch 'features/blas-lapack-hardening' into develop	2016-03-31 11:37:09 -07:00
Adam J. Stewart	66038ef729	Add url_for_version function and gtk variant	2016-03-31 13:34:56 -05:00
Todd Gamblin	2441068d54	Merge pull request #697 from KineticTheory/pkg-libdrm ... + libdrm depends_on libpciaccess. Use spack provided libpciaccess.	2016-03-31 09:55:53 -07:00
Todd Gamblin	0840ffa3dd	Merge pull request #698 from UCL-RITS/espresso ... Fixes install issues on OS/X for Quantum Espresso	2016-03-31 09:47:33 -07:00
Todd Gamblin	e2a7b7e50d	Merge pull request #701 from dhandeo/vtk ... VTK	2016-03-31 09:46:49 -07:00
Todd Gamblin	a6f6c2b9c5	Merge pull request #702 from adamjstewart/features/cuda ... Add CUDA and HOOMD-blue packages	2016-03-31 09:45:45 -07:00
Massimiliano Culpo	837eff1704	openssl : special treatment for @external (fixes #647)	2016-03-31 18:07:44 +02:00
Adam J. Stewart	a0902ad8d8	Change variant defaults and add comment	2016-03-31 11:04:29 -05:00
Dhanannjay Deo	3b0311a1e4	Add variant opengl2, which is ON by default ... Needed for visit which depends on vtk@6.1.0~opengl2	2016-03-31 10:39:34 -04:00
Dhanannjay Deo	123996aad0	Fix build for vtk6.1.0	2016-03-31 10:39:34 -04:00
Dhanannjay Deo	0bcfd09536	add: VTK lastest versions	2016-03-31 10:39:34 -04:00
Denis Davydov	6d0b4a28ab	oce: fix bugs related to NULL pointers and compiler optimisation	2016-03-31 13:36:28 +02:00
Mayeul d'Avezac	7430f9142f	Can install espresso on OS/X ... Espresso uses unix utility `find dir -name \*.x` to determine the executable to install. On OS/X, it also finds a bunch of debug symbols associated with the exectuble. These files have the same name, but are in a different directory. So the install process is done by hand in the package.py file, for OS/X.	2016-03-31 10:16:40 +01:00
Mayeul d'Avezac	397e0d1368	Fixes #454 in a simpler way than 34a8f0c ... Rather than mess with the environment, have espresso install into the right directory (prefix/bin).	2016-03-31 10:12:20 +01:00
Todd Gamblin	360994b638	Merge branch 'davydden-dealii' into develop ... - Modified arpack-ng to call libtoolize.	2016-03-30 23:47:21 -07:00
Todd Gamblin	44b8947445	arpack-ng needs an extra libtoolize to build.	2016-03-30 23:33:57 -07:00
Kelly (KT) Thompson	a88c15e101	+ libdrm depends_on libpciaccess. Use spack provided libpciaccess.	2016-03-30 21:18:04 -06:00
Kelly (KT) Thompson	a364ab0d0f	libpng depends on zlib.	2016-03-30 17:12:32 -06:00
Todd Gamblin	ef5c973c93	Merge pull request #688 from davydden/doxygen_fix ... doxygen: add missing dependencies	2016-03-30 15:54:02 -07:00
Todd Gamblin	35322eccc1	Merge pull request #601 from KineticTheory/pkg-numdiff ... Provide new package numdiff	2016-03-30 15:22:56 -07:00
Todd Gamblin	892b8f155f	Merge branch 'dealii' of git://github.com/davydden/spack into davydden-dealii	2016-03-30 15:09:29 -07:00
Todd Gamblin	228130ddc8	Merge pull request #693 from mathstuf/osx-ninja ... ninja: fix installation on OS X	2016-03-30 14:59:08 -07:00
Todd Gamblin	b4580eb04c	Merge pull request #604 from KineticTheory/pkg-graphviz ... Pkg graphviz	2016-03-30 14:51:15 -07:00
Kelly (KT) Thompson	2ad5d2ea2a	+ For darwin, add a dependency on gettext. This change was recommended in the discussion for PR#601.	2016-03-30 15:40:04 -06:00
Kelly (KT) Thompson	be2862ef4e	Merge remote-tracking branch 'upstream/develop' into pkg-numdiff	2016-03-30 15:35:46 -06:00
Ben Boeckel	f1a0619821	mpich: disable fortran without a fortran compiler	2016-03-30 17:19:29 -04:00
Kelly (KT) Thompson	4ab362ae17	+ Fix variant description.	2016-03-30 14:27:23 -06:00
Kelly (KT) Thompson	d1a3adfcf0	+ Make --disable-perl the default configure option.	2016-03-30 14:25:44 -06:00
Ben Boeckel	dbb25bfeed	ninja: fix installation on OS X ... The cp -t flag is a GNU-ism. Instead, add a trailing slash to bindir to ensure that it is not treated as a file.	2016-03-30 16:17:52 -04:00
Kelly (KT) Thompson	8da62b310e	Merge remote-tracking branch 'upstream/develop' into pkg-graphviz	2016-03-30 13:59:10 -06:00
Denis Davydov	5506e89aa9	rename variant doxygen to doc	2016-03-30 21:41:23 +02:00
Todd Gamblin	4bc6ace201	Merge pull request #690 from glennpj/py_updates ... Get py-pandas working plus some python package updates	2016-03-30 12:04:30 -07:00
Todd Gamblin	213e9746ad	Merge pull request #689 from KineticTheory/pkg-subversion ... Provide subversion (along with apr and apr-util)	2016-03-30 12:02:59 -07:00
Todd Gamblin	a65519def0	Merge pull request #691 from davydden/petsc_remove_qunused ... petsc: remove no longer needed -Qunused-arguments hack	2016-03-30 12:02:23 -07:00
Todd Gamblin	0ceb7c411b	Merge branch 'davydden-trilinos_extra' into develop	2016-03-30 11:41:43 -07:00
Todd Gamblin	01657e6991	Make suite-sparse use spack compilers.	2016-03-30 11:41:25 -07:00
Denis Davydov	b909da759d	petsc: remove no longer needed -Qunused-arguments hack	2016-03-30 19:26:03 +02:00
Adam J. Stewart	9519f3d988	Fix MPI-CUDA bug	2016-03-30 11:46:58 -05:00
Glenn Johnson	8ae84cfaba	This commit updates pandas and fixes dependencies. ... Added version 0.18.0. Added 'bin/f2py' to ignore so that activation works. Removed unneccessary dependencies on - libdrm - libpciaccess - llvm - mesa Added recommended dependencies from the pandas project site. http://pandas.pydata.org/pandas-docs/stable/install.html - py-numexpr - py-bottleneck The py-bottleneck is a new package that is also in this branch. Removed optional dependencies - py-scipy - py-matplotlib While those are most likely desired to be in the same python stack as pandas they are not required by pandas.	2016-03-30 11:21:38 -05:00
Glenn Johnson	78be85c84f	Added version 1.11.0.	2016-03-30 11:21:17 -05:00
Glenn Johnson	e7ae983b41	Added version 2.5. ... Added 'bin/f2py' to ignore so that activation works.	2016-03-30 11:20:27 -05:00
Glenn Johnson	f3b353f5f9	Add 'bin/f2py' to ignore so activation works.	2016-03-30 11:17:24 -05:00
Glenn Johnson	8948cb100b	Add version 1.3.7.	2016-03-30 11:16:35 -05:00
Glenn Johnson	17075736a0	Add version 2.5.2.	2016-03-30 11:16:11 -05:00
Glenn Johnson	42729d9cce	Added version 2016.3.	2016-03-30 11:10:32 -05:00
Glenn Johnson	9153e03e5c	Added version 20.5.	2016-03-30 11:09:47 -05:00
Glenn Johnson	3b19cc303f	Added version 1.10.0.	2016-03-30 11:08:28 -05:00
Glenn Johnson	5c95977dcc	Added version 15.0.1	2016-03-30 11:06:04 -05:00
Glenn Johnson	bc309e42d8	New package, py-bottleneck.	2016-03-30 11:00:18 -05:00
Kelly (KT) Thompson	a7ceacb991	+ Changes to swig are not needed with this PR.	2016-03-30 09:47:31 -06:00
Kelly (KT) Thompson	5b1ef64e31	+ Provide basic instructions for providing subversion w/o additional language bindings.	2016-03-30 09:33:00 -06:00
Kelly (KT) Thompson	f2051f0440	Merge remote-tracking branch 'upstream/develop' into pkg-graphviz	2016-03-30 08:28:53 -06:00
Denis Davydov	2abdd71b41	add dev version and conditionals for tests; remove parmetis	2016-03-30 15:19:29 +02:00
Denis Davydov	9e9f5d01ad	doxygen: add missing dependencies	2016-03-30 13:28:33 +02:00
Denis Davydov	bafc6cebe1	doxygen off by default	2016-03-30 12:00:21 +02:00
Denis Davydov	5b6eefbf04	add variants and extra dependencies	2016-03-30 11:30:35 +02:00
Gregory Lee	c017387214	Merge pull request #672 from citibeth/efischer/160327-GEOSPython3 ... [WIP] GEOS Python extension did not compile with Python3.	2016-03-29 20:35:00 -07:00
Gregory L. Lee	81b9148b9e	Merge branch 'develop' of https://github.com/llnl/spack into develop	2016-03-29 20:26:22 -07:00
Gregory L. Lee	98bb151d85	updated geos version	2016-03-29 20:25:56 -07:00
Todd Gamblin	e4de235e75	Merge pull request #653 from citibeth/efischer/160325-Cython3Fix ... Added new Cython version; old versions don't work with Python3.	2016-03-29 17:13:37 -07:00
Todd Gamblin	f42b1dfcbd	Merge branch 'trilinos_extra' of git://github.com/davydden/spack into davydden-trilinos_extra	2016-03-29 17:08:51 -07:00
Kelly (KT) Thompson	c69b9b7b24	Merge remote-tracking branch 'upstream/develop' into pkg-subversion	2016-03-29 17:14:27 -06:00
Kelly (KT) Thompson	a4eff6de3f	+ New version of cmake (3.5.1).	2016-03-29 17:10:49 -06:00
Todd Gamblin	7f469eadff	Merge pull request #684 from davydden/astyle ... astyle@2.04: add new package	2016-03-29 15:29:14 -07:00
Todd Gamblin	3c8881487f	Merge pull request #632 from sixy6e/gdal-tools ... Upload of GDAL, kealib, openjpeg, py-tuiview package builds.	2016-03-29 15:28:38 -07:00
Elizabeth Fischer	abee9c83b4	Removed googletest FIXME...	2016-03-29 17:26:34 -04:00
Adam J. Stewart	4ddba5f7ed	Add CUDA and HOOMD-blue packages	2016-03-29 14:47:16 -05:00
Todd Gamblin	a06f682e49	Merge pull request #671 from citibeth/efischer/160327-RemoveRedundantLibXML2 ... Removed redundant package py-libxml2. Use libxml2 instead.	2016-03-29 12:38:07 -07:00
Patrick Gartung	d96ea5ba00	add modules package and have setup script find it if built	2016-03-29 12:20:11 -05:00
Denis Davydov	ad402ff85b	astyle@2.04: add new package	2016-03-29 18:43:44 +02:00
Todd Gamblin	e0fdb34104	Merge branch 'eschnett-eschnett/boost-mpi-osx' into develop	2016-03-29 05:15:40 -07:00
Todd Gamblin	62ae830e49	Merge branch 'eschnett/boost-mpi-osx' of git://github.com/eschnett/spack into eschnett-eschnett/boost-mpi-osx	2016-03-29 05:14:41 -07:00
Todd Gamblin	b3a384e1d8	Merge pull request #680 from davydden/hypre_muparser_fixes ... minor fixes to hypre and muparser on Linux	2016-03-29 05:11:50 -07:00
Todd Gamblin	275943d8df	Merge branch 'eschnett-eschnett/gcc-osx-2' into develop	2016-03-29 04:16:53 -07:00
Patrick Gartung	ccc1b23bea	this allows gcc4.9.3 to build on OSX10	2016-03-29 04:15:07 -07:00
Denis Davydov	63c3feb79e	minor fixes to hypre and muparser on Linux	2016-03-29 10:05:08 +02:00
Todd Gamblin	7e7461e8fb	Merge pull request #626 from davydden/mumps_shared_tests ... add shared variant to mumps (needed for Trilinos) plus tests	2016-03-29 00:33:30 -07:00
Denis Davydov	7753d823cb	add a comment on static mumps	2016-03-29 09:27:55 +02:00
Denis Davydov	f9bcce6a68	turn off python by default	2016-03-29 09:19:24 +02:00
Kelly (KT) Thompson	197f07306b	Merge remote-tracking branch 'upstream/develop' into pkg-subversion	2016-03-28 19:56:07 -06:00
Kelly (KT) Thompson	40cea0110f	Merge remote-tracking branch 'upstream/develop' into pkg-graphviz	2016-03-28 19:53:22 -06:00
Todd Gamblin	02879d94ff	Merge pull request #673 from davydden/netcdf_cxx ... new package: netcdf-cxx	2016-03-28 18:03:36 -07:00
Denis Davydov	09e77812b6	fix installation of superlu_dist headers and add it as a dependency to petsc; add a variant to hypre to disable internal superlu	2016-03-29 00:21:32 +02:00
Denis Davydov	4e87cf9d74	fix extra comma	2016-03-28 18:00:34 +02:00
Denis Davydov	207215980b	make hypre and hdf5 be ON/OFF	2016-03-28 17:54:27 +02:00
Denis Davydov	dd60cc326c	adopt modifed superlu and hypre	2016-03-28 17:52:22 +02:00
Denis Davydov	5eefca43e7	petsc: extend variants by mumps, complex and debug	2016-03-28 14:35:01 +02:00
Denis Davydov	0da545ecac	tell amesos that we use mumps 5	2016-03-28 13:16:08 +02:00
Denis Davydov	e00cab75bd	more elaborated tests/direct solvers	2016-03-28 12:12:55 +02:00
Denis Davydov	97cdd79478	fix netcdf	2016-03-28 10:49:20 +02:00
Denis Davydov	9c894f5935	new package: netcdf-cxx	2016-03-28 10:19:25 +02:00
Todd Gamblin	8b45d6f84f	Merge pull request #658 from davydden/metis_parmetis_darwin ... metis/parmetis/oce/boost: correct install_name on Darwin via a global tool	2016-03-27 16:10:05 -07:00
Elizabeth F	3bd550d6a2	GEOS Python extension did not compile with Python3.	2016-03-27 18:28:51 -04:00
Denis Davydov	7eca1284c8	metis/parmetis/boost/oce/scalapack: correct install_name on Darwin via a global function.	2016-03-28 00:22:25 +02:00
citibeth	ccd155572f	Removed redundant package py-libxml2. Use libxml2 instead.	2016-03-27 18:18:54 -04:00
Denis Davydov	fc73e93b50	rework netcdf	2016-03-27 23:47:43 +02:00
Todd Gamblin	9061800b30	Merge branch 'eschnett/gcc-osx-2' of git://github.com/eschnett/spack into eschnett-eschnett/gcc-osx-2	2016-03-27 13:18:23 -07:00
Denis Davydov	20600b8cac	add tests and netcdf-cxx4	2016-03-27 21:03:18 +02:00
Todd Gamblin	66bb71534b	Better blas/lapack and scipy packages: more robust, added shared variants. ... - py-scipy now builds with netlib-lapack, openblas, and atlas. - started a convention for passing lib info from blas/lapack implementations. - Improved netlib-lapack: - Also build static libs when `shared` variant is enabled. - Enable CBLAS build - needed minor patch to build correctly. - Added `shared` variant to OpenBLAS. - Made OpenBLAS build properly shared and static.	2016-03-27 11:32:42 -07:00
Denis Davydov	439d3b3ddb	mumps: add install_name / soname	2016-03-27 17:38:25 +02:00
citibeth	cc42391e0f	Added py-netcdf	2016-03-27 11:06:10 -04:00
Denis Davydov	69ebc8173e	use global tool to fix install_name	2016-03-27 16:04:13 +02:00
Denis Davydov	9cff241ad5	fix install name on Darwin	2016-03-27 10:39:09 +02:00
Denis Davydov	a82a587b32	lower requirement on mumps	2016-03-27 06:17:43 +02:00
citibeth	9b130e1d19	Added googletest package.	2016-03-26 20:42:35 -04:00
Elizabeth F	11ca06b104	Added new py-cython version	2016-03-26 20:37:02 -04:00
Denis Davydov	9c391bbda1	minor changes to variants	2016-03-26 20:52:08 +01:00
Denis Davydov	965ce633c3	cleanup variants	2016-03-26 18:51:59 +01:00
Denis Davydov	f603c82e81	qualify Amesos link errors	2016-03-26 18:43:55 +01:00
Elizabeth F	497adc3b42	Added new version; old versions don't work with Python3.	2016-03-25 22:47:37 -04:00
Denis Davydov	c7011d21aa	update dependencies. Builds fine on OSX	2016-03-25 22:15:39 +01:00
citibeth	358b387283	Merge remote-tracking branch 'upstream/develop' into efischer/160311-StagedPackage	2016-03-25 17:14:35 -04:00
Todd Gamblin	42ec822379	Merge pull request #633 from davydden/netcdf_curl ... make netcdf link against Spack's curl	2016-03-25 12:54:53 -07:00
Todd Gamblin	8b2e79bcfa	Merge pull request #485 from epfl-scitas/packages/blas_lapack_providers ... reworking package : netlib	2016-03-25 12:53:46 -07:00
citibeth	8019748396	Merge remote-tracking branch 'upstream/develop' into efischer/160311-StagedPackage ... # Conflicts: # lib/spack/spack/package.py	2016-03-25 15:36:54 -04:00
Denis Davydov	6699399e51	add when to depends_on scalapack	2016-03-25 17:00:42 +01:00
Denis Davydov	eec50b524b	minor cleanup	2016-03-25 16:58:14 +01:00
Denis Davydov	5172f09b9f	builds on OSX again (modulo CC wrappers are solved)	2016-03-25 16:47:48 +01:00
Denis Davydov	26a72619ae	add missing sys	2016-03-25 12:42:26 +01:00
Denis Davydov	21e81e92a9	try to disable VerifyFortranC tests on Darwin	2016-03-25 12:05:48 +01:00
Denis Davydov	828aeefb1d	minor cleanup	2016-03-25 12:01:00 +01:00
Denis Davydov	7f2db8c267	fix w GCC 4.8 on Ubuntu but broke w GCC 5.3/Clang on OSX	2016-03-25 11:56:41 +01:00
Denis Davydov	d096b155f4	fix filter_file	2016-03-25 11:56:40 +01:00
Denis Davydov	c33a63cabc	fix python installation	2016-03-25 11:56:40 +01:00
Denis Davydov	416fcd0810	same	2016-03-25 11:56:40 +01:00
Denis Davydov	0fc9326a4c	add variants	2016-03-25 11:56:40 +01:00
Denis Davydov	df995c4ef8	minor cleanup	2016-03-25 11:56:40 +01:00
Denis Davydov	8c9f887613	finally builds	2016-03-25 11:56:40 +01:00
Denis Davydov	3f12a51759	keep fiddling	2016-03-25 11:56:40 +01:00
Denis Davydov	e51fe2934e	fiddle more	2016-03-25 11:56:40 +01:00
Denis Davydov	fade526ae4	remove tbb	2016-03-25 11:56:40 +01:00
Denis Davydov	7897f10126	fiddle with fortran	2016-03-25 11:56:40 +01:00
Denis Davydov	eb5b0767aa	remove gfortran as we have libnotfound...	2016-03-25 11:56:40 +01:00
Denis Davydov	2fb599ea86	minor	2016-03-25 11:56:39 +01:00
Denis Davydov	50e4b609c6	minor	2016-03-25 11:56:39 +01:00
Denis Davydov	7e4e2c988a	minor	2016-03-25 11:56:39 +01:00
Denis Davydov	88a7a23132	even more	2016-03-25 11:56:39 +01:00
Denis Davydov	2162627f35	more	2016-03-25 11:56:39 +01:00
Denis Davydov	bc3314a57d	more and more	2016-03-25 11:56:39 +01:00
Denis Davydov	45b4895888	patch	2016-03-25 11:56:39 +01:00
Denis Davydov	b6a35716ce	same	2016-03-25 11:56:39 +01:00
Denis Davydov	b91a155e8d	more specific about dependencies	2016-03-25 11:56:39 +01:00
Denis Davydov	18db930866	rearrange	2016-03-25 11:56:39 +01:00
Denis Davydov	76006fc346	fix typo	2016-03-25 11:56:38 +01:00
Denis Davydov	30ba96e58f	same	2016-03-25 11:56:38 +01:00
Denis Davydov	83fea631f1	extend trilinos	2016-03-25 11:56:38 +01:00
Massimiliano Culpo	f15249afe5	Merge branch 'develop' of https://github.com/LLNL/spack into packages/blas_lapack_providers ... Conflicts: var/spack/repos/builtin/packages/py-numpy/package.py	2016-03-25 11:05:05 +01:00
Denis Davydov	3e39daeb12	add fPIC to MUMPS when building shared libs	2016-03-25 09:56:24 +01:00
Denis Davydov	fd67da607e	make netcdf link against Spack's curl	2016-03-25 09:32:48 +01:00
Josh Sixsmith	540e57f026	Upload of GDAL, kealib, openjpeg, py-tuiview package builds.	2016-03-25 18:27:02 +11:00
Denis Davydov	fdd7e91ba0	add shared variant to mumps (needed for Trilinos) plus tests	2016-03-25 06:56:46 +01:00
Denis Davydov	03c8a91f6a	parmetis: avoid hardcoding -lm; use same approach as in METIS	2016-03-24 22:33:10 +01:00
Denis Davydov	0d4d201b70	patch parmetis to use external GKlib	2016-03-24 21:24:03 +01:00
Denis Davydov	7fb463abb9	install GKlib headers along with METIS	2016-03-24 21:24:03 +01:00
Todd Gamblin	38ea75e8ca	Merge pull request #490 from epfl-scitas/packages/atlas ... atlas : provides both 'blas' and 'lapack'	2016-03-24 11:24:04 -07:00
Todd Gamblin	823edd0bb2	Merge pull request #627 from adamjstewart/features/numpy-scipy ... Simplify NumPy dependencies	2016-03-24 11:05:09 -07:00
Alfredo Gimenez	254f65f299	Remove incorrect sanity check for libelf	2016-03-24 10:48:38 -07:00
Adam J. Stewart	8643e21913	Simplified NumPy dependencies	2016-03-24 12:34:58 -05:00
alalazo	758a9c9096	python extensions : create PYTHONPATH in module files	2016-03-24 10:57:46 +01:00
Todd Gamblin	7cf1b7ed51	Merge pull request #613 from davydden/superlu_dist_fix_lib ... fix superlu-dist lib installation	2016-03-24 02:54:43 -07:00
Todd Gamblin	1306cdd998	Merge pull request #618 from epfl-scitas/fixes/espresso_no_module ... fix : no module file gets generated by espresso	2016-03-24 02:53:56 -07:00
Todd Gamblin	4be8472f61	Merge pull request #612 from davydden/mumps_osx ... fix MUMPS build on OSX (set parallel=False)	2016-03-24 02:53:29 -07:00
Todd Gamblin	e1848c1d28	Merge pull request #624 from davydden/parmetis_gnu ... fix parmetis on Ubuntu with GNU compilers by linking to lm	2016-03-24 02:44:40 -07:00
Todd Gamblin	c83d22b5fc	Merge pull request #587 from cyrush/cmake_pkg_openssl_as_variant ... cmake package: add variant for openssl support	2016-03-24 02:42:39 -07:00
Denis Davydov	9b8b17b6f1	fix parmetis on Ubuntu with GNU compilers by linking to lm	2016-03-24 10:36:02 +01:00
Denis Davydov	4e5dfc8b18	fix missing (depricated) _dggsvd_ and _sggsvd_ in Openblas 0.2.16	2016-03-23 22:09:39 +01:00
alalazo	acaa589bdd	Merge branch 'develop' of https://github.com/LLNL/spack into packages/blas_lapack_providers ... Conflicts: var/spack/repos/builtin/packages/netlib-lapack/package.py	2016-03-23 17:25:00 +01:00
alalazo	34a8f0c96b	espresso : fixes #454	2016-03-23 17:01:52 +01:00
Todd Gamblin	cc582dd4b4	Add mock python package.	2016-03-23 02:03:27 -07:00
Todd Gamblin	091fcc3aa9	Merge pull request #599 from davydden/slepc ... add Slepc package	2016-03-23 01:53:32 -07:00
Todd Gamblin	a4f5084589	Merge pull request #609 from xjrc/packages/silo ... Update Package : Silo	2016-03-23 01:52:56 -07:00
Todd Gamblin	71c976d212	Merge pull request #611 from davydden/p4est ... add p4est package	2016-03-23 01:52:38 -07:00
Denis Davydov	01918a6f48	fix MUMPS build on OSX (set parallel=False)	2016-03-23 09:29:24 +01:00
Todd Gamblin	c4134ee71e	Fix #608: broken numpy build. ... - Failed to catch all instances of modify_module when it was renamed to setup_dependent_package. - Refactored remaining modify_module calls. - Also modified Python's setup_dependent_package slightly: only creates empty site-packages directory for Python extensions now, not for all dependents.	2016-03-23 00:36:32 -07:00
Denis Davydov	5b3c96a9bb	fix superlu-dist lib installation	2016-03-23 08:07:45 +01:00
Joseph Ciurej	474db2085e	Simplified the 'url_for_version' function for the 'Crypto++' package.	2016-03-22 15:55:54 -07:00
Gregory Becker	7c729d4c3c	Merged newarch into merge	2016-03-22 15:22:51 -07:00
Denis Davydov	0ee993569f	add deal.ii package	2016-03-22 23:04:59 +01:00
Denis Davydov	6c8d51f403	add p4est package	2016-03-22 22:58:14 +01:00
Denis Davydov	24264eb00e	add slepc package	2016-03-22 22:44:10 +01:00
Denis Davydov	27f337aa11	petsc: set PETSC_DIR in dependent_env	2016-03-22 22:12:01 +01:00
Todd Gamblin	2d69f386d0	Merge pull request #600 from davydden/arpack_mpi_fix ... arpack: fix for +mpi variant	2016-03-22 13:05:55 -07:00
Todd Gamblin	4a15477783	Merge pull request #605 from davydden/hypre_osx ... temporary fix Hypre for OSX by building static lib by default	2016-03-22 12:42:14 -07:00
Todd Gamblin	8823a5ac1c	Merge pull request #602 from davydden/oce ... add OCE package	2016-03-22 12:41:14 -07:00
Todd Gamblin	cb2e6c9d02	Merge pull request #603 from davydden/tbb ... add Intel TBB package	2016-03-22 12:40:49 -07:00
Todd Gamblin	4f44431900	Merge pull request #606 from davydden/gettext ... add gettext package	2016-03-22 12:38:34 -07:00
Joseph Ciurej	1728a0c3e6	Updated the 'crypto++' package to use an improved URL formation scheme (inspired by changes made to the 'Silo' package).	2016-03-22 12:33:11 -07:00
Joseph Ciurej	d05e4581c9	Added the '+silex' variant to the Silo package. ... Added a number of different versions to the Silo package.	2016-03-22 12:31:26 -07:00
Denis Davydov	fd1784369a	add muparser package	2016-03-22 19:50:15 +01:00
Denis Davydov	5f68e14d3b	add gettext package	2016-03-22 19:41:31 +01:00
Cyrus Harrison	e56f5c4d6b	add Intel TBB package	2016-03-22 19:21:34 +01:00
Erik Schnetter	7618dc504c	temporary fix Hypre for OSX by building static lib by default	2016-03-22 19:18:04 +01:00
Kelly (KT) Thompson	1f8d79b69a	+ Provide a ~perl variant to support building on systems w/o the perl-devel ... package installed.	2016-03-22 09:33:49 -06:00
Denis Davydov	d25026b749	add OCE package	2016-03-22 16:26:16 +01:00
Kelly (KT) Thompson	3214cd0d56	Merge remote-tracking branch 'upstream/develop' into pkg-graphviz	2016-03-22 09:24:31 -06:00
Denis Davydov	6eb97a30a3	arpack: fix for +mpi variant	2016-03-22 14:24:27 +01:00
Todd Gamblin	e32eb7e990	Merge pull request #585 from davydden/mumps_w_parmetis ... fix mumps: when installed with parmetis has to be linked with metis	2016-03-22 02:44:04 -07:00
Todd Gamblin	f323f54704	Merge pull request #591 from epfl-scitas/package/llvm ... llvm : added version 3.8.0	2016-03-22 02:22:39 -07:00
Todd Gamblin	1a3bdf03c3	Merge pull request #598 from davydden/suite_sparse_rename ... Suite sparse rename	2016-03-22 02:15:08 -07:00
Todd Gamblin	eed0ccad73	Merge pull request #597 from davydden/arpack ... arpack: add a patch for 3.3	2016-03-22 02:10:14 -07:00
Todd Gamblin	a5a4cce7f1	Merge pull request #582 from KineticTheory/develop ... + Provide fpic variant for netlib-lapack.	2016-03-22 02:05:43 -07:00
Todd Gamblin	a26992ef55	Change from PR #552: rename setup_dependent_python_module -> setup_dependent_package ... - Fixed in package.py - Fixed wrong prototypes in packages that use it. - Fixed build_environment to set module variables properly - added hacky fix to ensure spec/package consistency in build processes. - Need to think about defensive spec copy done by `Repo.get`. May be time to think about an immutable spec implementation.	2016-03-22 01:56:16 -07:00
Denis Davydov	cb97e8dd93	adjust eigen and octave to use new names of suite sparse	2016-03-22 09:43:37 +01:00
Denis Davydov	3c5a1605d5	adjust the class name for suite sparse	2016-03-22 09:27:39 +01:00
Denis Davydov	aca8b5c89d	move suite sparse to a proper folder	2016-03-22 09:27:00 +01:00
Denis Davydov	23bf70296e	arpack: add a patch for 3.3	2016-03-22 09:24:15 +01:00
Todd Gamblin	3f32dd767e	Merge pull request #589 from davydden/petsc_osx ... fix petsc on osx	2016-03-22 00:33:34 -07:00
Kelly (KT) Thompson	7ec450912d	+ Provide subversion and required packages apr and apr-util. ... + Installation of subversion may need to be modified to include python and perl bindings. I have provided comments to this end, but the code is not active.	2016-03-21 21:14:03 -06:00
Kelly (KT) Thompson	039efd55d5	Merge remote-tracking branch 'upstream/develop' into pkg-graphviz	2016-03-21 20:43:22 -06:00
Kelly (KT) Thompson	8bf8617876	Merge remote-tracking branch 'upstream/develop' into pkg-numdiff	2016-03-21 20:42:21 -06:00
Kelly (KT) Thompson	4b46e21685	+ Provide package numdiff.	2016-03-21 19:55:54 -06:00
Todd Gamblin	b1516f64eb	Rename some environment methods to be less repetitive, add set_path.	2016-03-21 16:01:40 -07:00
Todd Gamblin	439d47b4e4	Refactor environment setup. ... - Gave setup_environment and setup_dependent_environment more similar signatures. They now allows editing the Spack env and the runtime env for *this* package and dependents, respectively. - modify_module renamed to setup_dependent_python_module for symmetry with setup_dependent_environment and to avoid confusion with environment modules. - removed need for patching Package objects at runtime. - adjust packages to reflect these changes.	2016-03-21 16:01:35 -07:00
Todd Gamblin	861a235ecb	Merge pull request #552 from epfl-scitas/features/env_objects_flying_around ... enhancement proposal : customization of module files	2016-03-21 15:56:20 -07:00
Kelly (KT) Thompson	799f1f6768	Merge remote-tracking branch 'upstream/develop' into pkg-graphviz	2016-03-21 16:24:17 -06:00
Todd Gamblin	624e56db6a	Merge pull request #592 from mathstuf/paraview-python ... Paraview python	2016-03-21 14:59:41 -07:00
Denis Davydov	953fb35f82	add superlu_dist package	2016-03-21 18:00:32 +01:00
Ben Boeckel	553fff270a	paraview: disallow python3 ... ParaView is not Python3-ready.	2016-03-21 11:55:09 -04:00
Ben Boeckel	8e77f17760	paraview: fix variant description typo	2016-03-21 11:55:09 -04:00
Ben Boeckel	c5c92d50eb	paraview: remove trailing whitespace	2016-03-21 11:24:36 -04:00
alalazo	efef229b85	Merge branch 'develop' of https://github.com/LLNL/spack into package/llvm	2016-03-21 16:22:34 +01:00
alalazo	7569204a53	llvm : does not support python 3	2016-03-21 16:18:02 +01:00
Denis Davydov	3a3443dff6	parmetis patches by PETSc developers	2016-03-21 15:14:48 +01:00
alalazo	3fcaf5b903	llvm : update to 3.8.0	2016-03-21 14:47:05 +01:00
Denis Davydov	b926d8a0cd	build parmetis against external metis	2016-03-21 14:33:00 +01:00
alalazo	fbeffee91e	Merge branch 'develop' of https://github.com/LLNL/spack into features/env_objects_flying_around ... Conflicts: lib/spack/spack/package.py var/spack/repos/builtin/packages/netlib-scalapack/package.py	2016-03-21 09:46:49 +01:00
Denis Davydov	7b283bfaff	fix petsc on osx	2016-03-21 07:50:10 +01:00
Cyrus Harrison	bba66cbe28	cmake: depend on openssl when openssl variant=true	2016-03-20 19:27:22 -07:00
Cyrus Harrison	d493658a58	cmake package: add variant for openssl support ... The openssl variant defaults to true to preserve spack's current CMake configuration, which is using OpenSSL. Signed-off-by: Cyrus Harrison <cyrush@llnl.gov>	2016-03-20 15:32:54 -07:00
Todd Gamblin	c0f0350634	Merge pull request #583 from davydden/openblas_osx ... fix openblas suffix for OS-X	2016-03-20 03:37:30 -07:00
Denis Davydov	db61a09cf1	fix mumps: when installed with parmetis has to be linked with metis	2016-03-20 09:47:15 +01:00
Denis Davydov	95ad2875b6	fix scalapack suffix for osx	2016-03-20 09:27:07 +01:00
Denis Davydov	620c120503	fix openblas suffix for OS-X	2016-03-20 09:26:11 +01:00
Kelly (KT) Thompson	ed0b5e649d	+ Provide fpic variant for netlib-lapack.	2016-03-19 20:45:35 -06:00
alalazo	5f6f2d5f51	Revert "openssl : solved glitch to prevent spack to freeze when the network is unreachable" ... This reverts commit 4cf4bf3a03.	2016-03-18 14:42:24 +01:00
alalazo	ec8cc2b528	PYTHONPATH : python patches methods for its extensions	2016-03-18 14:40:53 +01:00
alalazo	82ba0c6c07	Merge branch 'bugfix/openssl' into features/env_objects_flying_around	2016-03-18 11:08:55 +01:00
Erik Schnetter	3b24db92b5	Update PAPI to 5.4.3	2016-03-18 11:08:16 +01:00
alalazo	4cf4bf3a03	openssl : solved glitch to prevent spack to freeze when the network is unreachable	2016-03-18 11:05:59 +01:00
alalazo	f9438c75d0	Merge branch 'develop' of https://github.com/LLNL/spack into features/env_objects_flying_around	2016-03-18 10:26:34 +01:00
Todd Gamblin	179ed7cce6	Merge pull request #566 from eschnett/eschnett/papi ... Update PAPI to 5.4.3	2016-03-17 18:52:44 -07:00
Todd Gamblin	1689131043	Merge pull request #567 from eschnett/eschnett/openblas ... Update OpenBLAS to 0.2.16	2016-03-17 18:52:32 -07:00
Todd Gamblin	a88c02854a	Merge pull request #565 from eschnett/eschnett/curl ... Update curl to 7.47.1	2016-03-17 18:52:02 -07:00
Erik Schnetter	1b279cd7ff	Update OpenBLAS to 0.2.16	2016-03-17 21:51:26 -04:00
Erik Schnetter	802acb4d16	Update PAPI to 5.4.3	2016-03-17 21:50:21 -04:00
Todd Gamblin	90268876f7	Change sanity_check_[file|dir] to sanity_check_is_[file|dir], per #554 ... - Add documentation as well.	2016-03-17 18:49:58 -07:00
Erik Schnetter	9e4c757f50	Update curl to 7.47.1	2016-03-17 21:49:36 -04:00
alalazo	e558809043	python : fixed typo	2016-03-17 19:32:31 +01:00
alalazo	ac394718ec	python : implemented possible solution	2016-03-17 18:22:07 +01:00
alalazo	f0f0663d1b	package : split environment_modifications into setup_environment and setup_dependent_environment. ... package : renamed `module_modifications` to `modify_module` for consistency	2016-03-17 15:11:39 +01:00
Kelly (KT) Thompson	f07d4c9439	+ Provide ~perl and ~shared variants.	2016-03-16 21:30:41 -06:00
citibeth	fa2a66db67	1. Disabled git versions known to have vulnerabilities. ... 2. Added autoconf command to allow building directly from GitHub source.	2016-03-16 15:46:59 -04:00
Todd Gamblin	905549ea2d	Merge pull request #555 from epfl-scitas/packages/binutils ... Adding latest version in binutils	2016-03-16 08:39:13 -07:00
alalazo	597727f8be	tclmodules : added hooks to process EnvironmentModifications objects	2016-03-16 15:19:13 +01:00
Nicolas Richart	9c29966674	Change urls in binutils to help 'spack checksum/versions' + adding latest version	2016-03-16 12:57:17 +01:00
alalazo	b45ec3f04e	environment : simplified modification of the environment	2016-03-16 10:55:28 +01:00
alalazo	b2c98feea4	Merge branch 'develop' of https://github.com/LLNL/spack into features/env_objects_flying_around	2016-03-16 09:02:35 +01:00
Todd Gamblin	68d22253ec	Add sanity checks to the libelf build.	2016-03-15 17:22:48 -07:00
Matthew LeGendre	108ea1522a	Merge pull request #549 from LLNL/bugfix/gh538-less-greedy-concretize ... Bugfix/gh538 less greedy concretize	2016-03-15 16:18:54 -07:00
Todd Gamblin	cdd2ea3067	Merge pull request #537 from adamjstewart/features/octave ... Add GNU Octave package	2016-03-15 11:23:40 -07:00
alalazo	572cb93bf8	package : renamed setup_dependent_environment to module_modifications	2016-03-15 14:05:30 +01:00
alalazo	c85888eb57	package : added environment_modifications	2016-03-15 13:36:41 +01:00
alalazo	bcea1df01c	environment : refactoreded set_build_environment_variables	2016-03-15 10:49:33 +01:00
Adam J. Stewart	0d9a6d3c25	Updates to qrupdate	2016-03-14 14:19:30 -05:00
Todd Gamblin	f45b8b1083	Add some tests for packages with multiple virtual dependencies. ... - Added mock `hypre` package, depends on `lapack` and `blas`. - test cases where some packages provide both `lapack` and `blas`, but others do not.	2016-03-14 05:02:50 -07:00
Erik Schnetter	8b715d9c3f	Update tmux	2016-03-13 21:31:48 -04:00
citibeth	003957a689	Reverted bad change	2016-03-13 00:33:13 -05:00
Elizabeth F	c1a8574d8f	Fixed for Python 2.6	2016-03-13 00:29:40 -05:00
Elizabeth F	90bb855ffa	A new subclass StagedPackage(Package) is introduced. This PR should ... not change the behavior for existing packages that subclass from spack.Package. If a package subclasses spack.StagedPackage instead of spack.Package, the install() phase (run inside a forked process) is now separated into sub-stages: a) spconfig: Generate a script spconfig.py that will configure the package (eg by running CMake or ./configure) This is for use if the user wishes to build externally from Spack. Therefore, the Spack compiler wrappers are NOT used here. Currently, that means that RPATH support is up to the user. b) configure: Configure the project (eg: runs configure, CMake, etc). This will configure it for use within Spack, using the Spack wrapper. c) build: eg: "make" d) install: eg: "install" If one chooses to use StagedPackage instead of Package, then one must implement each of the install sub-stages as a separate method. StagedPackage.install() then calls each of the sub-stages as appropriate. StagedPackage can be configured to only run certain sub-stages. This is done by setting the optional kwarg install_phases when calling do_install(). Setting install_phases() ONLY has an effect on StagedPackage, not on any existing packages. By default, install_phases is set to make StagedPackage run the same stages that are normally run for any package: configure, build, install (and NOT spconfig). The ability for Spack to run stages selectively for StagedPackage instances will enable new functionality. For example, explicit CMake/Autotools helpers that allow Spack to help configure a user's project without fetching, building or installing it. ------------- One implementation of StagedPackage is provided, CMakePackage. This has the following advantage for CMake-based projects over using the standard Package class: a) By separating out the phases, it enables future new functionality for packages that use it. b) It provides an implementation of intall_spconfig(), which will help users configure their CMake-based projects. CMakePackage expects users to implement configure_args() and configure_env(). These methods provide the package-specific arguments and environment needed to properly configure the package. They are placed in separated functions because they are used in both the spconfig and configure stages. TODO: 1. Generate spconfig.py scripts that are more readable. This allows the users to understand how their project is configured. 2. Provide a practical way for the user to ACCESS the spconfig stage without building the project through Spack. 3. The CMAKE_TRANSITIVE_INCLUDE_PATH stuff needs to be reworked; it should be considered provisional for now. 4. User of Autotools might wish to make a similar ConfigurePackage subclass of StagedPackage. --------------- One package using CMakePackage is introduced. See ibmisc/package.py.	2016-03-11 23:30:38 -05:00
Elizabeth F	7cd478418d	New version of LAPACK	2016-03-11 23:28:36 -05:00
Elizabeth F	90f2e40ff9	Added comment to Emacs.	2016-03-11 23:28:16 -05:00
Adam J. Stewart	145390c7f3	Add gl2ps and qrupdate packages	2016-03-11 16:57:37 -06:00
Todd Gamblin	081bdd0828	Merge pull request #528 from citibeth/efischer/160309-Emacs ... Added Emacs package	2016-03-11 13:31:58 -08:00
Adam J. Stewart	6ec65cd4ca	Add GNU Octave package	2016-03-11 15:03:37 -06:00
Todd Gamblin	4574f768ef	Merge pull request #526 from KineticTheory/develop ... Provide instructions for cmake/3.5.0 (plus 2 new variants) and qt/5.4.2	2016-03-11 09:20:47 -08:00
Kelly (KT) Thompson	f5e8857c5e	+ Rename variant 'sphinxbuild' to 'doc' as recommended in the discussion of ... PR#526. Also, remove a debug print statement that was accidentally committed.	2016-03-11 09:51:12 -07:00
Kelly (KT) Thompson	280384fce3	Merge remote-tracking branch 'upstream/develop' into develop	2016-03-10 09:09:16 -07:00
Todd Gamblin	b637f75164	Merge branch 'mplegendre-features/external-packages' into develop	2016-03-10 02:04:44 -08:00
alalazo	4f14db8af2	netlib-lapack : optional dependency on external blas	2016-03-10 10:34:51 +01:00
Todd Gamblin	1fe196f95c	whitespace and formatting	2016-03-10 01:29:55 -08:00
Todd Gamblin	ad6625456e	Merge pull request #513 from alfredo-gimenez/develop ... Variants and fixes to thrift package	2016-03-10 00:59:15 -08:00
Elizabeth F	b701aa10d4	Fixed up	2016-03-09 21:21:25 -05:00
Elizabeth F	267e83d8a7	Added emacs package.	2016-03-09 21:16:50 -05:00
Todd Gamblin	bf1639e044	Merge pull request #522 from epfl-scitas/bugfix/mpfr ... change of url for mpfr	2016-03-09 17:17:23 -08:00
Kelly (KT) Thompson	23cbc2b1d9	+ Provide download/build instructions for qt/5.4.2. ... - This version provides updates to provided cmake scripts that are required for building cmake-gui. + Provide download/build instructions for version 3.5.0. - When building the +qt variant, add a validate function to ensure that qt-5.4.0 is not used (this version of qt has errors related to cmake).	2016-03-09 17:59:39 -07:00
Nicolas Richart	6e82ab1f15	change of url for mpfr	2016-03-09 21:18:44 +01:00
Todd Gamblin	b93a2ba1cf	Merge pull request #520 from LLNL/bugfix/remove-hdf5-unsupported-variant ... Removing `unsupported` variant from HDF5.	2016-03-09 11:39:06 -08:00
Kelly (KT) Thompson	113e942c3c	Merge remote-tracking branch 'upstream/develop' into develop.	2016-03-09 12:38:48 -07:00
Todd Gamblin	45ef496dd5	Add some descriptive language to a list comprehension.	2016-03-09 11:26:37 -08:00
Alfredo Adolfo Gimenez	383e73a5f5	Remove unneccessary depends_on	2016-03-09 11:25:51 -08:00
Todd Gamblin	d06ebf23d4	Removing unsupported variant from HDF5. ... - `unsupported` shouldn't be a variant.	2016-03-09 11:16:35 -08:00
Matthew LeGendre	87db69478d	Merge branch 'develop' into features/external-packages ... Conflicts: lib/spack/spack/package.py	2016-03-09 11:09:37 -08:00
Todd Gamblin	b43c277dc6	Merge @citibeth and @alalazo's petsc fixes from #515 and #517	2016-03-09 10:55:50 -08:00
Todd Gamblin	ad7d89b165	Merge branch 'efischer/160309-HypreFix' of git://github.com/citibeth/spack into citibeth-efischer/160309-HypreFix	2016-03-09 10:54:08 -08:00
Todd Gamblin	8ac1752743	Merge pull request #501 from adamjstewart/patches/m4 ... Add patch to allow PGI to build M4	2016-03-09 10:29:48 -08:00
Adam J. Stewart	8e76cda200	Patch config.hin, not extern-inline.m4	2016-03-09 10:41:31 -06:00
alalazo	f01d1c4385	petsc : added variants and logic to build various flavors	2016-03-09 14:36:37 +01:00
Elizabeth F	c67b922185	Added shared library capability.	2016-03-09 00:34:08 -05:00
Elizabeth F	5b22873b3d	Fixed issues with hypre: ... 1. --with-lapack-lib was wrong. 2. --with-MPI was wrong; set env vars for MPI wrappers instead. 3. Added version 2.10.1 4. Added shared library variant (True by default). Hypre can build shared or static libraries, but not both in the same build.	2016-03-09 00:27:25 -05:00
Alfredo Gimenez	0c7d0c0b6c	Variants and fixes to thrift package	2016-03-08 12:26:40 -08:00
Adam J. Stewart	e0e545774a	Add more versions to Autotools	2016-03-08 12:15:40 -06:00
Todd Gamblin	18ce5ccf8f	Avoid race in pango's make install, set parallel=False	2016-03-08 02:49:11 -08:00
Adam J. Stewart	b7750cf61c	Autoreconf is necessary after patch	2016-03-07 15:52:22 -06:00
Adam J. Stewart	1e7d946d91	Add patch to allow PGI to build M4	2016-03-07 12:37:51 -06:00
Todd Gamblin	96e1b2d25c	Merge pull request #486 from RemoteConnectionManager/paraview_fix ... Paraview new version	2016-03-07 02:48:12 -08:00
Todd Gamblin	bff7107f56	Merge pull request #491 from citibeth/efischer/160229-NewPackages-2 ... (2) New packages added: blitz, netcdf-cxx4, netcdf-fortran, proj, udunits2	2016-03-07 02:45:37 -08:00
Erik Schnetter	a399451e1e	Update OpenSSL to 1.0.2g	2016-03-06 23:34:48 -05:00
citibeth	ae87948a23	Fixed URLs ... Removed vestigal mpi variant in netcdf-fortran	2016-03-05 23:05:45 -05:00
Todd Gamblin	c59546fae0	Merge branch 'adamjstewart-features/libsigsegv' into develop	2016-03-05 15:15:08 -08:00
Todd Gamblin	7d847f4dc4	Minor tweaks to m4 -- be sure to add sigsegv args explicitly.	2016-03-05 15:14:21 -08:00
Todd Gamblin	07255da6e9	Merge branch 'features/libsigsegv' of https://github.com/adamjstewart/spack into adamjstewart-features/libsigsegv	2016-03-05 15:06:49 -08:00
Adam J. Stewart	220b6a9fee	Make libsigsegv an optional dependency	2016-03-05 16:46:32 -06:00
Todd Gamblin	24f0757d82	Merge pull request #343 from adamjstewart/features/mpc ... Add different URL for older source code	2016-03-05 14:37:43 -08:00
Todd Gamblin	3dd630d0a5	Make openssl a variant in libevent.	2016-03-05 14:33:23 -08:00
Todd Gamblin	0b864aacdc	Merge branch 'eschnett/libevent' of https://github.com/eschnett/spack into eschnett-eschnett/libevent	2016-03-05 14:23:06 -08:00
Todd Gamblin	ac67f3b53e	Merge pull request #487 from spakin/llvm-3.7.1 ... Added LLVM 3.7.1 support	2016-03-05 14:19:31 -08:00
Todd Gamblin	a9d7135c19	Merge pull request #495 from alfredo-gimenez/develop ... Fixed unmatched function signature for do_fetch in jdk package	2016-03-05 14:16:09 -08:00
Mark Miller	f663d37da7	Adding zfp package.	2016-03-04 17:08:11 -08:00
Alfredo Gimenez	f90eaa5f46	Fixed unmatched function signature for do_fetch in jdk package	2016-03-04 14:53:08 -08:00
Adam J. Stewart	a7b918837e	GNU m4 depends on libsigsegv	2016-03-04 15:22:28 -06:00
Elizabeth Fischer	648d08eb30	Update package.py ... Updated homepage URL to general NetCDF homepage.	2016-03-04 12:05:43 -05:00
Elizabeth Fischer	b043c4a5b8	Update package.py ... Removed comments on configure options.	2016-03-04 12:04:41 -05:00
Elizabeth F	0eb6ef2cd0	1. Removed fake MPI dependency from netcdf-cxx4 and netcdf-fortran. ... 2. Removed Fortran bootstrap variant from netcdf. Users who need NetCDF Fortran interface should install netcdf-fortran. 3. Added result of ./configure --help on the netcdf-fortran. Verified the package has no additional options that should be exposed through Spack.	2016-03-04 11:14:52 -05:00
alalazo	a2af4940aa	atlas : disabling parallel builds	2016-03-04 09:59:16 +01:00
alalazo	310099d888	atlas : provides blas and lapack	2016-03-04 09:32:01 +01:00
Scott Pakin	7183db1b7d	Added LLVM 3.7.1 support	2016-03-03 11:30:57 -07:00
alalazo	63ae407169	netlib-lapack : unified build with netlib-blas ... openssl : updated version py-numpy : updated dependencies	2016-03-03 16:39:21 +01:00
Luigi Calori	f5cc63156c	Merge branch 'develop' of https://github.com/RemoteConnectionManager/spack into paraview_fix ... merge upstream develop	2016-03-03 12:43:38 +01:00
citibeth	976d0240c4	Removed FIXMEs.	2016-03-02 18:58:47 -05:00
Gregory Becker	6e7b00a0f6	Made module handling much saner and safer	2016-03-02 15:54:23 -08:00
Gregory Becker	676591ffc0	fixed a bug and a test bug	2016-03-02 14:17:46 -08:00
Gregory Becker	25f20b1967	bug hunting	2016-03-02 11:40:21 -08:00
Todd Gamblin	8421dcb762	Merge pull request #452 from epfl-scitas/llvm/cleanup ... Cleaned package : llvm	2016-03-02 01:32:08 -08:00
Todd Gamblin	9c565b155a	Merge pull request #462 from xjrc/packages/silo ... Update Package : Silo	2016-03-02 01:31:10 -08:00
Kelly (KT) Thompson	8174489787	+ Provide two new variants for cmake: ... 1) +qt - build the cmake-gui Qt application. - adds a dependency on Qt. 2) +sphinxbuild - build the html CMake documentation. - adds a dependency on python and py-sphinx	2016-03-01 15:25:57 -07:00
citibeth	eb1d90a8cf	Undid accidental change on this branch.	2016-02-29 23:31:54 -05:00
Elizabeth F	15ae92aae9	New packages added: blitz, netcdf-cxx4, netcdf-fortran, proj, udunits2	2016-02-29 23:21:44 -05:00
Elizabeth F	e414c5fdfb	Added missing cmake dependencies	2016-02-29 23:21:08 -05:00
Ian Lee	67f327f805	Updated links to use new llnl.gov address	2016-02-28 19:47:19 -08:00
Luigi Calori	8f3ac9ac8b	adding new version to praview, compiled with spack -d install -j 8 --keep-stage paraview@5.0.0+qt+python+tcl+opengl2%gcc@4.8.2 ^netcdf -mpi	2016-02-27 01:40:32 +01:00
Joseph Ciurej	30d9ca2bde	Updated the silo package and added the '+fortran' variant.	2016-02-26 16:06:17 -08:00
Erik Schnetter	20845a739f	Libevent depends on OpenSSL	2016-02-24 22:18:51 -05:00
alalazo	976ae91dcc	llvm : removed duplicate version	2016-02-24 14:11:57 +01:00
Todd Gamblin	0d23ff92b0	Merge pull request #446 from LLNL/bugfix/python_config_compiler ... modify compiler commands in python config files, fix for #431	2016-02-24 10:52:06 +09:00
Todd Gamblin	87610a5102	Merge pull request #448 from epfl-scitas/packages/gromacs ... Added package : gromacs	2016-02-24 10:49:06 +09:00
Tom Scogland	5c8dd6c3c8	llvm trunk version ... Adding a trunk version to the llvm package. This has all the features and requirements of the others, with the additional caveat that the llvm project makes no guarantee that trunk on all repositories together will necessarily make a working compiler. It has been tested, and worked with a version today, but not yesterday, so if you test keep that in mind.	2016-02-20 17:23:55 -08:00
Todd Gamblin	97c3854c40	Merge pull request #422 from epfl-scitas/packages/openssl_url ... openssl : url computation	2016-02-19 16:28:02 -08:00
alalazo	30c3047482	gromacs : added package	2016-02-19 12:39:38 +01:00
Todd Gamblin	3c1aa9a4ad	Merge pull request #298 from epfl-scitas/refactoring/resource_directive ... refactoring proposal : composite for Stage and FetchStrategy	2016-02-18 23:13:12 -08:00
Gregory L. Lee	19d10291bf	modify compiler commands in python config files, fix for #431	2016-02-18 15:45:29 -08:00
Mario Melara	3558404c03	Check difference by using arch tuple rather than .target	2016-02-17 14:54:39 -08:00
Mario Melara	0a6b54a8c4	Added module compilers so that no CompilerSpecError is thrown	2016-02-17 14:53:56 -08:00
Joseph Ciurej	6cd76d69c3	Fixed the "+shared" variant in the "hdf5" package.	2016-02-17 11:51:24 -08:00
Joseph Ciurej	0388093f7a	Changed the hdf5 "+static" variant to become the "+shared" variant.	2016-02-16 17:33:19 -08:00
Joseph Ciurej	fca7ef2f7b	Moved "Triangle" to "triangle" to be more in line with Spack package naming conventions.	2016-02-16 17:23:37 -08:00
Joseph Ciurej	8cab10214e	Added the installation files for the "ExodusII" package. ... Added the "+static" variant to "hdf5" to enable "ExodusII" support.	2016-02-16 16:43:24 -08:00
Joseph Ciurej	09254014b1	Added the installation files for the "TetGen" package.	2016-02-16 13:24:01 -08:00
Joseph Ciurej	3c8bbeafc7	Added the installation files for the "Triangle" package.	2016-02-16 13:01:18 -08:00
Joseph Ciurej	9a6221ea40	Added the installation files for the "ndiff" package.	2016-02-16 12:47:14 -08:00
Joseph Ciurej	db50f52bbc	Adding the "Crypto++" package installation files.	2016-02-16 11:40:00 -08:00
Todd Gamblin	9e4671a4b4	Merge pull request #340 from adamjstewart/features/xz ... Remove unnecessary URLs	2016-02-16 10:24:42 -08:00
Adam J. Stewart	bf162e60f1	Add latest version	2016-02-15 10:53:50 -06:00
Todd Gamblin	d8c0edcc81	Minor code cleanup for gcc.	2016-02-14 14:40:25 -08:00
Todd Gamblin	63911d4165	Merge pull request #354 from eschnett/eschnett/libedit ... libedit depends on ncurses	2016-02-12 10:33:08 -08:00
Erik Schnetter	8e33cc1ae1	Properly wrap all long lines	2016-02-12 13:11:45 -05:00
Erik Schnetter	77c17e1d92	Since my last patch didn't get traction, here is a new approach to building gcc on Darwin: ... - Add a variant specifying whether to build with binutils, defaulting to true - Auto-detect whether this is Darwin; if so, set binutils and gold defaults to false, as they don't work on Darwin - Disable Go, which doesn't build on Darwin - Clean up handling configure options	2016-02-12 12:52:47 -05:00
alalazo	247a4bc751	mpich : added back MPI_F90	2016-02-12 12:15:09 +01:00
Massimiliano Culpo	70985170e5	qe : compiled on rhle6	2016-02-12 12:08:31 +01:00
Erik Schnetter	d7f674ce96	libedit depends on ncurses	2016-02-11 14:53:20 -05:00
alalazo	e8704433de	espresso : added directories to search path	2016-02-11 18:57:40 +01:00
alalazo	b272a8881b	espresso : fixed dependency handling	2016-02-11 18:18:05 +01:00
alalazo	ca3cdb4458	espresso : current working tree	2016-02-11 17:45:09 +01:00
alalazo	157ec210a7	espresso : synchronized with current develop	2016-02-11 13:05:31 +01:00
alalazo	e7454132a2	Merge branch 'develop' of https://github.com/LLNL/spack into packages/espresso	2016-02-11 13:03:47 +01:00
Todd Gamblin	bcf705b85e	Merge pull request #432 from RemoteConnectionManager/paraview_fix ... Paraview fix	2016-02-10 13:59:08 -08:00
Todd Gamblin	e23c260cb0	Merge pull request #402 from epfl-scitas/bugfix/netlib-scalapack ... Bugfix: netlib-scalapack does not work with all versions of python	2016-02-10 11:40:31 -08:00
Luigi Calori	d7b3ed08ab	add variant to select OpenGL2 Paraview backend	2016-02-10 15:40:05 +01:00
Luigi Calori	a1bd65550e	fix a reported hash mismatch on netcdf-4.4.0 tar download	2016-02-10 15:17:54 +01:00
Luigi Calori	fe8aca630c	add a variant to Qt for make dependency on mesa swlwctable	2016-02-10 14:58:00 +01:00
Luigi Calori	f729cf621a	fixing qhull: seems that dependency on cmake is essential when it is used	2016-02-10 13:29:36 +01:00
alalazo	71a25a109a	arpack-ng : added package	2016-02-05 11:00:37 +01:00
Todd Gamblin	15324c276f	Merge pull request #426 from epfl-scitas/packages/suitesparse ... Added package : SuiteSparse	2016-02-04 18:08:07 -07:00
alalazo	e2a95d4b50	eigen : added support for SuiteSparse	2016-02-04 16:27:26 +01:00
alalazo	e3a0e1881d	suitesparse : basic implementation	2016-02-04 16:00:39 +01:00
alalazo	031c292136	dakota : basic installation	2016-02-04 13:48:21 +01:00
Adam J. Stewart	e1b3c286ef	Add url for cmake, simplify url_for_version	2016-02-03 16:28:09 -06:00
Todd Gamblin	f38851b73d	Merge remote-tracking branch 'github/pull/99' into develop ... Conflicts: var/spack/repos/builtin/packages/cmake/package.py	2016-02-03 14:24:59 -07:00
Todd Gamblin	72ca311f17	Merge pull request #414 from epfl-scitas/issues/trilinos_385 ... fix : trilinos and dependencies	2016-02-03 11:42:53 -07:00
Todd Gamblin	c5455ceee5	Merge pull request #417 from mathstuf/hdf5-unsupported-flag ... hdf5: always pass the unsupported flag	2016-02-03 08:56:30 -07:00
Todd Gamblin	5a3338323c	Merge pull request #419 from adamjstewart/features/libgpg-error ... Add latest libgpg-error version	2016-02-03 08:56:06 -07:00
Todd Gamblin	8a4b86dac9	Merge pull request #420 from adamjstewart/features/qhull ... Add latest qhull version	2016-02-03 08:55:32 -07:00
Todd Gamblin	bc4bf71d8f	Merge pull request #421 from adamjstewart/features/phonopy ... Add Phonopy and PyYAML Python modules	2016-02-03 08:54:22 -07:00
Todd Gamblin	fe358e24e3	Merge pull request #423 from epfl-scitas/packages/opencv ... Added package : OpenCV	2016-02-03 08:52:58 -07:00
alalazo	44c1b06609	opencv : added package	2016-02-03 13:36:25 +01:00
alalazo	587d356d6e	openssl : added logic to version computation. The package now warns user if he depends on an old version of the library	2016-02-03 08:59:26 +01:00
Adam J. Stewart	d2fb1522a3	Add Phonopy and PyYAML Python modules	2016-02-02 12:54:24 -06:00
Adam J. Stewart	ab3698e3a4	Add latest qhull version	2016-02-02 11:42:31 -06:00
Adam J. Stewart	422e87badb	Add latest libgpg-error version	2016-02-02 10:57:58 -06:00
Ben Boeckel	2b140b9a34	hdf5: default +unsupported to on ... This flag can end up being required if a dependency tree ends up needing hdf5+cxx+parallel, but nothing turns it on. Since the core spack code puts this together, it ends up that the end user needs to specify it manually. Instead, just assume an unsupported configuration (since these *are* useful setups) and if anyone wants to seek upstream support, masking the flag can be done.	2016-02-01 11:46:33 -05:00
alalazo	c8d2275c06	opencv : reverted url_for_version modifications	2016-02-01 10:56:48 +01:00
alalazo	e67507478a	opencv : reverted url_for_version modifications	2016-02-01 10:55:39 +01:00
alalazo	b0707a61e7	Merge branch 'develop' of https://github.com/LLNL/spack into issues/trilinos_385	2016-02-01 10:54:17 +01:00
Todd Gamblin	9eb037bc87	Merge pull request #415 from adamjstewart/features/hwloc ... Checksum fix for hwloc	2016-02-01 02:41:47 -07:00
Todd Gamblin	140510fedf	Merge pull request #408 from adamjstewart/features/fish ... Modify url settings for fish package	2016-02-01 02:39:54 -07:00
alalazo	360abb070a	netcdf : fixed typo in configure option ... openssl : smarter URL computation	2016-02-01 08:33:03 +01:00
Gregory L. Lee	3bf6fed7b3	updated openssl version	2016-01-29 11:29:27 -08:00
Adam J. Stewart	d14d50beb6	Checksum fix for hwloc	2016-01-29 09:47:57 -06:00
Abhishek Kulkarni	74225544c6	Rename the hpx package to hpx-5.	2016-01-29 10:35:54 -05:00
Massimiliano Culpo	cd54793913	Cleaning up	2016-01-29 11:42:06 +01:00
alalazo	b574c4ad51	trilinos : updated package to meet changes in dependencies	2016-01-29 08:57:07 +01:00
Abhishek Kulkarni	5907cc0de5	Merge remote-tracking branch 'upstream/develop' into develop	2016-01-29 00:32:34 -05:00
Abhishek Kulkarni	2bea7f8d69	Add the HPX-5 package.	2016-01-29 00:29:20 -05:00
Todd Gamblin	9fb5ddbb4c	Merge pull request #411 from adamjstewart/features/pnetcdf ... Add PnetCDF and M4 packages	2016-01-28 20:52:59 -07:00
David Beckingsale	d9548c01af	Correct package URL	2016-01-28 15:47:37 -07:00
Adam J. Stewart	4f34031534	Add PnetCDF and M4 packages	2016-01-28 15:41:58 -06:00
David Beckingsale	7e65f4da82	Add the Caliper package	2016-01-28 13:22:56 -08:00
Gregory L. Lee	0e52c30bb8	added py-wheel package	2016-01-28 10:42:46 -08:00
Adam J. Stewart	06f3cc33ba	Modify url settings for fish package	2016-01-28 11:41:12 -06:00
alalazo	07bb6fef01	resource directive : now works with all the fetch strategies available	2016-01-28 10:58:56 +01:00
Adam J. Stewart	6122642b81	More NetCDF changes	2016-01-27 16:16:33 -06:00
Nicolas Richart	f1d8f30342	Bug fix: precedence in % operator seems to change depending in the python version	2016-01-27 10:54:41 +01:00
Todd Gamblin	90750f59c1	Merge pull request #400 from adamjstewart/features/netcdf ... Extensive modifications to NetCDF package	2016-01-26 19:31:14 -07:00
Tom Scogland	23af31cb1c	adding the cmocka unit testing library	2016-01-26 17:55:32 -08:00
Todd Gamblin	c344b30fc4	Merge pull request #342 from adamjstewart/features/hwloc ... Add url_for_version function to calculate url	2016-01-26 16:01:17 -08:00
Todd Gamblin	d7bd023afa	Merge pull request #339 from adamjstewart/features/hdf ... Add HDF package	2016-01-26 15:51:57 -08:00
Adam J. Stewart	81ccba202c	Make szip a variant	2016-01-26 15:38:22 -06:00
Adam J. Stewart	c6bb00085f	Extensive modifications to NetCDF package	2016-01-26 12:04:48 -06:00
Adam J. Stewart	1d18f2031c	Add szip variant	2016-01-25 14:57:33 -06:00
Matthew LeGendre	fa888a4ba1	Merge branch 'develop' into features/external-packages ... Conflicts: lib/spack/spack/cmd/mirror.py lib/spack/spack/concretize.py lib/spack/spack/config.py lib/spack/spack/spec.py lib/spack/spack/stage.py var/spack/packages/mvapich2/package.py	2016-01-25 10:52:17 -08:00
Todd Gamblin	b6731ea47c	Merge pull request #336 from scheibelp/features/boost-additive-libs ... additive compilation of boost libraries	2016-01-22 14:09:19 -08:00
Peter Scheibel	a653d2f5e2	Slightly more robust approach for setting defaults for noinstall_libs	2016-01-22 13:43:16 -08:00
Peter Scheibel	9f99ee61c7	1. added default install libs (atomic, test, locale, program_options) ... 2. clarify comment for default_noinstall_libs 3. renamed regex_icu variant to icu_support (both the locale and regex libs can use it) 4. explicitly set b2 install ICU_PATH when regex_icu is activated	2016-01-22 13:25:45 -08:00
Alfredo Gimenez	10de5a3ec7	Patch fix for boost@1.60.0%gcc@4.4.7	2016-01-22 13:02:18 -08:00
Peter Scheibel	4a55b97d11	Fixed reference	2016-01-22 12:37:12 -08:00
Peter Scheibel	2e58bc3113	Sticking with additive approach but now most libraries are installed by default.	2016-01-21 19:57:49 -08:00
Erik Schnetter	2f70c842b8	Disable patch that was merged into upstream in 1.10.2	2016-01-21 14:13:39 -05:00
Erik Schnetter	6b3f023d98	Update OpenMPI to 1.10.2	2016-01-21 14:05:16 -05:00
Todd Gamblin	10848c2e9a	Refactor args for Executable.__call__ ... - simplify output, error, and input redirection - `return_output=True` is now `output=str` - `return_output=True` will still work for the time being but is deprecated. - previously you could say `return_output=True` and `output=<stream>`, which wouldn't actually write to the stream. Now you actually can't specify erroneous cases since there is only one parameter with mutually exclusive options..	2016-01-21 10:46:33 -08:00
Todd Gamblin	25f7dbd3e9	Merge pull request #384 from epfl-scitas/packages/elpa ... added package : elpa	2016-01-21 09:14:28 -08:00
Adam J. Stewart	03d5ee6738	Remove constraint on dependency version	2016-01-21 10:02:33 -06:00
Adam J. Stewart	ea9d0c0263	Remove constraints on dependency versions	2016-01-21 09:58:47 -06:00
Adam J. Stewart	950246b331	Remove constraint on dependency version	2016-01-21 09:54:24 -06:00
alalazo	d9b344a247	Merge branch 'develop' of https://github.com/LLNL/spack into packages/elpa	2016-01-21 12:05:28 +01:00
Todd Gamblin	f0a6bfa23c	Merge pull request #376 from adamjstewart/features/mvapich2 ... Various updates to MVAPICH2 package	2016-01-21 01:59:35 -08:00
Todd Gamblin	dab65e4ba6	Merge pull request #380 from epfl-scitas/packages/mumps ... Adding packages MUMPS and ScaLAPACK	2016-01-21 01:58:57 -08:00
alalazo	785c01218f	elpa : added missing dependencies	2016-01-21 10:06:43 +01:00
alalazo	88f2a1d43a	Merge remote-tracking branch 'scitas/packages/mumps' into packages/elpa	2016-01-21 08:34:44 +01:00
alalazo	a8132470e4	Merge branch 'develop' into packages/elpa	2016-01-21 08:33:59 +01:00
Nicolas Richart	b71b478a36	Minor correction to install mumps+mpi	2016-01-20 18:31:02 +01:00
alalazo	19caac69d8	openmpi : turned torque support into a variant (default false) ... hdf5 : fixed a few bugs, removed suspicious macro deinition, etc.	2016-01-20 15:22:49 +01:00
Nicolas Richart	974fc65e0f	renaming packages to follow changes on develop	2016-01-20 14:38:55 +01:00
Nicolas Richart	65f65ec4e4	Adding MUMPS and ScaLAPACK	2016-01-20 14:21:44 +01:00
alalazo	ab27fdc692	elpa : commit partial package. Blocked by missing scalapack	2016-01-20 09:35:15 +01:00
Peter Scheibel	965af75d23	Merge branch 'develop' into features/boost-additive-libs	2016-01-19 17:27:18 -08:00
Adam J. Stewart	98706d31dc	Various updates to MVAPICH2 package ... Use url_for_version function to specify urls Add version 2.2b Add dedicated MRAIL variant Fix typo Make fortran compiler flags more specific	2016-01-19 12:46:15 -06:00
Todd Gamblin	9be37da077	Merge pull request #373 from adamjstewart/features/mpich ... Add verbs variant, remove deprecated configure flags	2016-01-19 08:59:59 -08:00
alalazo	e121faffa1	eigen : added package	2016-01-19 17:26:26 +01:00
Adam J. Stewart	0d42cdaffd	Merge branch 'develop' into features/hdf	2016-01-19 10:09:25 -06:00
Adam J. Stewart	530f8e5b26	Merge branch 'develop' into features/hdf ... * develop: (85 commits) Make libxcb compile with gcc 4.9. disable parallel install for glib (found races) disable cairo-trace, which is incompatible with older libiberty.h. Fix LaunchMon on newer gcc versions. Simplify output redirection in spack.util.executable Allow completely empty config files. Update cmake package to use http in all URLs. Fix create, diy, edit, and repo commands to use multiple repos. Add namespace option to find command. Temporary fix: Clang is the default compiler on Mac OS X. Netcdf requires cmake >=2.8.12 Mbedtls depends on cmake Update libtool to 2.4.6 Update Julia to 0.4.3 Make binutils build on OS X Add verbs and psm variants py-matplotlib: depend on freetype py-numpy: make blas/lapack optional dependencies qhull: apply patch to work with libc++'s standard library New package GNU tar ...	2016-01-19 10:07:21 -06:00
Adam J. Stewart	fbab88b0e1	Merge branch 'develop' into features/xz ... * develop: (85 commits) Make libxcb compile with gcc 4.9. disable parallel install for glib (found races) disable cairo-trace, which is incompatible with older libiberty.h. Fix LaunchMon on newer gcc versions. Simplify output redirection in spack.util.executable Allow completely empty config files. Update cmake package to use http in all URLs. Fix create, diy, edit, and repo commands to use multiple repos. Add namespace option to find command. Temporary fix: Clang is the default compiler on Mac OS X. Netcdf requires cmake >=2.8.12 Mbedtls depends on cmake Update libtool to 2.4.6 Update Julia to 0.4.3 Make binutils build on OS X Add verbs and psm variants py-matplotlib: depend on freetype py-numpy: make blas/lapack optional dependencies qhull: apply patch to work with libc++'s standard library New package GNU tar ...	2016-01-19 10:05:50 -06:00
Adam J. Stewart	58f18d5b12	Merge branch 'develop' into features/hwloc ... * develop: (85 commits) Make libxcb compile with gcc 4.9. disable parallel install for glib (found races) disable cairo-trace, which is incompatible with older libiberty.h. Fix LaunchMon on newer gcc versions. Simplify output redirection in spack.util.executable Allow completely empty config files. Update cmake package to use http in all URLs. Fix create, diy, edit, and repo commands to use multiple repos. Add namespace option to find command. Temporary fix: Clang is the default compiler on Mac OS X. Netcdf requires cmake >=2.8.12 Mbedtls depends on cmake Update libtool to 2.4.6 Update Julia to 0.4.3 Make binutils build on OS X Add verbs and psm variants py-matplotlib: depend on freetype py-numpy: make blas/lapack optional dependencies qhull: apply patch to work with libc++'s standard library New package GNU tar ...	2016-01-19 10:01:42 -06:00
Adam J. Stewart	d20ca32440	Merge branch 'develop' into features/mpc ... * develop: (85 commits) Make libxcb compile with gcc 4.9. disable parallel install for glib (found races) disable cairo-trace, which is incompatible with older libiberty.h. Fix LaunchMon on newer gcc versions. Simplify output redirection in spack.util.executable Allow completely empty config files. Update cmake package to use http in all URLs. Fix create, diy, edit, and repo commands to use multiple repos. Add namespace option to find command. Temporary fix: Clang is the default compiler on Mac OS X. Netcdf requires cmake >=2.8.12 Mbedtls depends on cmake Update libtool to 2.4.6 Update Julia to 0.4.3 Make binutils build on OS X Add verbs and psm variants py-matplotlib: depend on freetype py-numpy: make blas/lapack optional dependencies qhull: apply patch to work with libc++'s standard library New package GNU tar ...	2016-01-19 09:58:07 -06:00
Adam J. Stewart	f48fc0d8b1	Revert deprecated configure flags	2016-01-19 09:43:28 -06:00
Adam J. Stewart	16f1267c29	Merge branch 'develop' into features/mpich ... * develop: (43 commits) Make libxcb compile with gcc 4.9. disable parallel install for glib (found races) disable cairo-trace, which is incompatible with older libiberty.h. Fix LaunchMon on newer gcc versions. Simplify output redirection in spack.util.executable Allow completely empty config files. Fix create, diy, edit, and repo commands to use multiple repos. Add namespace option to find command. Temporary fix: Clang is the default compiler on Mac OS X. update compiler config test. add sanity check on config write as well as validation on read. Add jsonschema validation for config files. Make text wrapping off by default in tty, add a kwarg for it. add/remove/list working for new config format. Add Python 3 aliases to our argparse backport. All tests that call concretize() need to be MockPackagesTests. Fix bug in tests. Rework mirror configuration. Rework compiler configuration and simplify config.py logic. Remove mock_configs; tests no longer modify spack home directory. ...	2016-01-19 09:37:53 -06:00
Todd Gamblin	01c5b53ba1	Make libxcb compile with gcc 4.9.	2016-01-19 01:16:15 -08:00
Todd Gamblin	047f1b9de9	disable parallel install for glib (found races)	2016-01-19 01:16:15 -08:00
Todd Gamblin	b7b4faff96	disable cairo-trace, which is incompatible with older libiberty.h.	2016-01-19 01:16:14 -08:00
Todd Gamblin	67ea7ce0ab	Fix LaunchMon on newer gcc versions.	2016-01-19 01:16:14 -08:00
Todd Gamblin	8d6342c53d	Merge branch 'mplegendre-multi_pkgsrc_roots' into develop ... - This moves var/spack/packages to var/spack/repos/builtin/packages. - Packages that did not exist in the source branch, or were changed in develop, were moved into var/spack/repos/builtin/packages as part of the integration. Conflicts: lib/spack/spack/test/unit_install.py var/spack/repos/builtin/packages/clang/package.py	2016-01-19 01:16:08 -08:00
Adam J. Stewart	58162ec170	Add verbs variant, remove deprecated configure flags	2016-01-18 16:03:41 -06:00
Todd Gamblin	d802165e03	Merge pull request #355 from eschnett/eschnett/llvm ... LLVM depends on cmake, and does not depend on isl	2016-01-17 19:24:17 -08:00
Todd Gamblin	4bab6f9fdb	Update cmake package to use http in all URLs.	2016-01-17 18:55:36 -08:00
Todd Gamblin	afcd5420ee	Merge pull request #356 from eschnett/eschnett/tar ... New package GNU tar	2016-01-17 18:49:14 -08:00
Todd Gamblin	85e8f8eb6a	Merge pull request #353 from eschnett/eschnett/ncurses ... Install ncurses properly	2016-01-17 18:49:00 -08:00
Todd Gamblin	635e053e6d	Merge pull request #358 from adamjstewart/features/openmpi ... Add psm and verbs variants	2016-01-17 18:45:13 -08:00
Todd Gamblin	77c6038711	Merge pull request #370 from eschnett/eschnett/netcdf-cmake ... Netcdf requires cmake >=2.8.12	2016-01-17 18:31:56 -08:00
Todd Gamblin	a473830533	Merge pull request #367 from eschnett/eschnett/mbedtls-cmake ... Mbedtls depends on cmake	2016-01-17 18:26:07 -08:00
Todd Gamblin	99390be127	Merge pull request #366 from eschnett/eschnett/libtool-2.4.6 ... Update libtool to 2.4.6	2016-01-17 18:25:55 -08:00
Todd Gamblin	c20f8eb5b3	Merge pull request #365 from eschnett/eschnett/julia-0.4.3 ... Update Julia to 0.4.3	2016-01-17 18:25:45 -08:00
Todd Gamblin	1a145f68a7	Merge pull request #362 from eschnett/eschnett/binutils-osx ... Make binutils build on OS X	2016-01-17 18:25:24 -08:00
Erik Schnetter	81f1311a60	Netcdf requires cmake >=2.8.12	2016-01-17 14:57:08 -08:00
Erik Schnetter	f4b87e2967	Mbedtls depends on cmake	2016-01-17 11:05:15 -05:00
Erik Schnetter	60656b6255	Update libtool to 2.4.6	2016-01-17 11:03:40 -05:00
Erik Schnetter	e585a5d8a3	Update Julia to 0.4.3	2016-01-17 11:02:30 -05:00
Erik Schnetter	981cefe8d3	Make Boost build with MPI on OS X ... Boost does not build on OS X with either gold or binutils. The gold linker does not exist on Darwin, and binutils on Darwin provides an assembler that doesn't work for Boost. - Introduce a variant that specifies whether to build with binutils, defaulting to true for backward compatibility - Auto-detect whether we build on Darwin; in this case, set the gold and binutils variant defaults to false - Clean up configure flags for as and ld	2016-01-17 10:54:12 -05:00
Erik Schnetter	36a428b8fc	Make binutils build on OS X ... Binutils defines several global variables multiple times. Apparently this works fine under Linux, but it leads to a linker error on Darwin. Rename these global variables. Note that binutils on OS X is still not really useful, as important tools (e.g. ld) are not supported.	2016-01-17 10:49:13 -05:00
Peter Scheibel	d22cf1aed1	1. raise an exception if the multithreaded and singlethreaded options are both ... disabled 2. invoke the b2 installation once for each enabled threading option (apparently the install fails if a single call has both options enabled for mpi)	2016-01-15 18:07:41 -08:00
Gregory Becker	342f4bc2e0	Fixed virtual/cflag combination bug	2016-01-15 14:27:50 -08:00
Adam J. Stewart	eac795abc3	Add verbs and psm variants	2016-01-15 15:09:36 -06:00
Ben Boeckel	4f60948bff	py-matplotlib: depend on freetype ... Probably a missed dependency, but appeared on OS X.	2016-01-15 16:04:49 -05:00
Ben Boeckel	c3bf1a7741	py-numpy: make blas/lapack optional dependencies ... OS X is having trouble building these libraries, so make them optional dependencies.	2016-01-15 16:03:51 -05:00
Ben Boeckel	f6680a0051	qhull: apply patch to work with libc++'s standard library ... Only seen on OS X with clang right now.	2016-01-15 16:02:35 -05:00
Nicola Varini	7fc308ed26	Update to version 5.3	2016-01-15 17:04:25 +01:00
Nicola Varini	7d0256c9fb	Quantum-ESPRESSO package	2016-01-15 10:27:38 +01:00
Erik Schnetter	0a993cd9d7	New package GNU tar	2016-01-14 20:44:51 -05:00
Erik Schnetter	3e703cc281	LLVM depends on cmake, and does not depend on isl ... Add cmake requirement. Remove gmp and isl requirements. Using an external isl leads to a build failure for me on a fairly standard Fedora Linux workstation. The Spack package file says that isl is required for polly, however, the polly documentation states that as of LLVM 3.7, polly includes isl, and has no external dependencies any more.	2016-01-14 17:52:28 -05:00
Erik Schnetter	aa3897a880	Install ncurses properly ... Currently, ncurses's include files are installed into two separate subdirectories, "install/ncurses" and "install/ncursesw". The second level of subdirectories ("ncurses" and "ncursesw") are non-standard. I checked several systems to confirm this, and ncurses examples on the web also simply contain "#include <ncurses.h>" instead of "#include <ncurses/ncurses.h>", which would be necessary to use the currently installed ncurses packages. For example, this also breaks llvm, which uses ncurses, but does not expect the second level of subdirectories. I am now using the option "--enable-overwrite", which installs the header files directly in to ".../include". I also enable "widec" support all the time. These options are e.g. similar to the ones used by MacPorts, and I confirm that they make the llvm package build (which didn't build before).	2016-01-14 17:40:11 -05:00
Todd Gamblin	1268b41570	Merge pull request #293 from trws/llvm-rework ... Llvm rework	2016-01-14 01:13:39 -08:00
Todd Gamblin	93fdb06d7d	Merge pull request #273 from epfl-scitas/packages/R ... R : updated package	2016-01-14 00:13:27 -08:00
Adam J. Stewart	244ee673d6	Add latest version	2016-01-13 11:44:51 -06:00
Todd Gamblin	a56575a6d2	Merge pull request #324 from eschnett/eschnett/openblas-lapack ... Ensure that OpenBLAS provides a file liblapack.a	2016-01-13 08:26:26 -08:00
Erik Schnetter	aa1f96c73b	New package "cereal"	2016-01-13 11:21:52 -05:00
alalazo	78b57787fa	gmsh : added hdf5 support	2016-01-13 12:22:59 +01:00
alalazo	767f286a9f	gmsh : added fltk support	2016-01-13 11:26:10 +01:00
alalazo	ffaa4a8922	gmsh : added package with basic compile options	2016-01-13 10:05:19 +01:00
Todd Gamblin	8ead7783ab	Merge pull request #345 from eschnett/eschnett/petsc-python-2 ... Correct Python version constraint syntax	2016-01-12 14:26:28 -08:00
Erik Schnetter	8eb16ba02d	Merge branch 'develop' into eschnett/petsc-python-2 ... # Conflicts: # var/spack/packages/petsc/package.py	2016-01-12 14:36:37 -05:00
Adam J. Stewart	a6f2cc9cbf	Add required dependency version	2016-01-12 13:28:48 -06:00
Adam J. Stewart	180c673c78	Add different URL for older source code	2016-01-12 13:21:53 -06:00
Adam J. Stewart	6985d2c914	Add url_for_version function to calculate url	2016-01-12 13:00:05 -06:00
Adam J. Stewart	5520ce3c4a	Removed unnecessary URLs	2016-01-12 12:19:03 -06:00
Adam J. Stewart	9b3e0255f4	Add HDF package	2016-01-12 11:55:42 -06:00
Todd Gamblin	4ac530d289	Merge pull request #314 from eschnett/eschnett/libpciaccess-configure ... Build libpciaccess from tarball	2016-01-12 09:14:19 -08:00
Todd Gamblin	5bdc6e53e5	Merge pull request #323 from eschnett/eschnett/openssl-apps ... Ensure the APPS environment variable is not set when building OpenSSL	2016-01-12 09:13:50 -08:00
Todd Gamblin	dd0aa90aa1	Merge pull request #328 from eschnett/eschnett/lua-readline ... Resolve readline/ncurses dependency when building Lua	2016-01-12 09:13:21 -08:00
Todd Gamblin	1a3c0063a5	Merge pull request #329 from epfl-scitas/packages/cmake ... cmake : added variant that activates the build of the ncurses gui	2016-01-12 09:12:06 -08:00
alalazo	1f78b9c7af	parmetis : removed leftover import statement	2016-01-12 16:59:47 +01:00
alalazo	da8b08b5fe	parmetis : used spack install method instead of shutil.copy	2016-01-12 14:55:29 +01:00
alalazo	30da85c3d8	metis : added variant specified in BUILD.txt. Fixed wrong dependency on MPI. ... parmetis : added variants as in metis	2016-01-12 14:25:06 +01:00
Peter Scheibel	50727527bc	This commit makes the following changes: ... There are two sensible defaults for building boost libraries: build all of them or build none of them. Previously the Spack boost package took the first approach. This commit changes to building no libraries by default. The user can specify which libraries they need using variants (e.g. +iostreams to compile the boost iostreams library). If no libraries are built then a header-only install is performed (no compilation, just copy header files to prefix). The consequence of this change is that packages which specify a dependency on boost may now fail (until they are updated to specify exactly which boost libraries they need compiled). The user may now specify whether to build shared libraries (static libraries are always built) and whether to build libraries with/out multi-threading support (default is to only build with multi-threading support). The executable on the user-config.jam toolset line is set to Spack's cc script. Before, without this, the desired toolset was used but Spack deferred to the boost build system to choose the compiler version. bzip2 and zlib are always specified as dependencies when iostreams is built (before this could be controlled with the +compression variant).	2016-01-11 15:51:59 -08:00
Erik Schnetter	36d74d2a97	Correct Python version constraint syntax	2016-01-11 17:39:39 -05:00
Erik Schnetter	a5588e4bb7	Download package version with a configure script ... This avoids having to use autoconf, which requires many m4 scripts that are not always available.	2016-01-11 17:37:13 -05:00
Erik Schnetter	8af8c10559	Avoid key error when env var is unset	2016-01-11 17:33:44 -05:00
Todd Gamblin	85220dd77d	Revert "Require Python for PETSc"	2016-01-11 13:57:21 -08:00
Todd Gamblin	01f2c38ee7	Merge pull request #320 from eschnett/eschnett/parmetis-cmake ... parmetis requires cmake @2.8:	2016-01-11 13:56:28 -08:00
Todd Gamblin	25e398645f	Merge pull request #321 from eschnett/eschnett/petsc-python ... Require Python for PETSc	2016-01-11 13:56:10 -08:00
Todd Gamblin	c4f2373ac2	Merge pull request #318 from eschnett/eschnett/metis-cmake ... Require cmake @2.8: for metis	2016-01-11 13:56:04 -08:00
Todd Gamblin	d2b925c709	Merge pull request #312 from eschnett/eschnett/petsc-mpi ... Make PETSc build with OpenMPI	2016-01-11 13:53:51 -08:00
Todd Gamblin	87e8430921	Merge pull request #316 from eschnett/eschnett/tgz ... Use .tar.gz instead of .tar.xz in several packages for backward compatibility	2016-01-11 13:52:50 -08:00
Todd Gamblin	d380820f3a	Merge pull request #322 from eschnett/eschnett/gperftools-update ... Update gperftools	2016-01-11 13:52:05 -08:00
Todd Gamblin	309425833b	Merge pull request #325 from eschnett/eschnett/julia-update ... Several small updates to Julia	2016-01-11 13:48:09 -08:00
Todd Gamblin	9bbb9a8f0a	Merge pull request #330 from epfl-scitas/packages/cgal ... Added package : cgal	2016-01-11 13:47:55 -08:00
Todd Gamblin	054c6eefdb	Merge pull request #334 from adamjstewart/features/patchelf ... Add PatchELF package	2016-01-11 13:47:31 -08:00
Adam J. Stewart	adbe1d4f06	Add PatchELF package	2016-01-11 13:54:26 -06:00
Adam J. Stewart	6a51b1d570	Add SZip package	2016-01-11 13:43:31 -06:00
alalazo	81a389151f	cmake : added variant that activates the build of the ncurses gui	2016-01-11 13:00:23 +01:00
alalazo	625570e730	added package : cgal	2016-01-11 12:50:47 +01:00
Erik Schnetter	23c5a1e6e9	Build Lua on Darwin	2016-01-10 19:37:44 -05:00
Erik Schnetter	9f2dbc9df4	Update Lua to 5.3.2	2016-01-10 19:34:02 -05:00
Erik Schnetter	992b9c46dd	Resolve readline/ncurses dependency when building Lua	2016-01-10 13:44:53 -08:00
Erik Schnetter	79a1de2f17	Add a patch to prevent Julia running out of virtual memory	2016-01-09 10:47:31 -05:00
Erik Schnetter	b18732173a	Require Python to build Julia	2016-01-08 23:21:54 -05:00
Erik Schnetter	d9f1a55c90	Ensure than OpenBLAS provides a file liblapack.a ... OpenBLAS implements the virtual package "lapack", and its consumers apparently expect a "liblapack.a".	2016-01-08 22:48:37 -05:00
Erik Schnetter	d5ff7fda6e	Ensure the APPS environment variable is not set when building OpenSSL	2016-01-08 22:41:18 -05:00
Erik Schnetter	3d7e7c53c5	Require libunwind	2016-01-08 22:33:55 -05:00
Erik Schnetter	0c9acb0f62	Update gperftools to version 2.4	2016-01-08 22:32:00 -05:00
Erik Schnetter	2ac2985cf2	Require Python for PETSc ... PETSc requires Python for building. I have a case where an HPC system has a very old default Python version, too old for Spack. So I load a module for Python, which makes Spack work. This module relies on LD_LIBRARY_PATH. When building PETSc, Spack unsets LD_LIBRARY_PATH, breaking the Python that PETSc finds. Explicitly requiring Python for PETSc makes building PETSc work.	2016-01-08 22:24:42 -05:00
Erik Schnetter	e628896c2b	parmetis requires cmake @2.8:	2016-01-08 22:12:19 -05:00
Erik Schnetter	da8fd5b30a	Require cmake @2.8: for metis	2016-01-08 21:56:08 -05:00
Erik Schnetter	04f908a957	Require cmake @2.8:	2016-01-08 21:41:35 -05:00
Erik Schnetter	8da1dd2b45	Require cmake	2016-01-08 21:32:17 -05:00
Gregory Becker	6e5238d037	Fixing the fix and removing debug printing	2016-01-08 17:44:16 -08:00
Gregory Becker	2b2d4bae4e	Fixing multimethod test for new platforms	2016-01-08 17:38:37 -08:00
Gregory Becker	2b4dd8b9af	Fixed target satisfaction and updated tests accordingly	2016-01-08 16:30:27 -08:00
Gregory Becker	6ca1e5c4b0	Revert "added a bunch of packages and added submodule" ... This reverts commit 79808da760.	2016-01-08 15:02:29 -08:00
Gregory Becker	86230b9ac8	Revert "make sure submodule is added in the correct location" ... This reverts commit e9f7d033ff.	2016-01-08 15:01:46 -08:00
Erik Schnetter	6214148d35	Use .tar.gz instead of .tar.xz for backward compatibility	2016-01-08 17:16:30 -05:00
Gregory Becker	a9e9f9afb0	Revert "removed package for python packages with problematic / duplicate names" ... This reverts commit f3254ff02d.	2016-01-08 14:14:26 -08:00
Gregory Becker	1b0d064743	Revert "clean up package.py file and remove duplicate file" ... This reverts commit c809cc9273.	2016-01-08 14:13:33 -08:00
Gregory Becker	d2da41b0bd	More file permissions chasing	2016-01-08 12:12:03 -08:00
Gregory Becker	49908386ef	changing problematic package.py file permissions back to 0644	2016-01-08 11:48:59 -08:00
Gregory L. Lee	7ad3e2b56b	new python packages	2016-01-08 11:09:11 -08:00
Gregory Becker	6ccd9d6fa4	Cleaned up naming conventions for architecture, split into platform and target	2016-01-07 11:49:01 -08:00
Gregory L. Lee	175f20a9dc	new and updated python packages	2016-01-07 11:12:47 -08:00
Erik Schnetter	1646bec1a4	Make PETSc build with OpenMPI	2016-01-07 13:54:47 -05:00
Todd Gamblin	dd04b6a873	Merge pull request #278 from eschnett/eschnett/hdf5-variants ... Enable several variants for HDF5	2016-01-06 23:50:40 -08:00
Todd Gamblin	a651572cfd	Merge pull request #307 from eschnett/eschnett/atop ... New package atop	2016-01-06 23:40:03 -08:00
Ben Boeckel	e790146627	paraview: add some extra arguments on OS X ... X shouldn't be used on OS X and spack expects a Unix-style install, not a .app bundle.	2016-01-06 12:05:05 -05:00
Erik Schnetter	fd7c1fe584	Avoid using tabs	2016-01-06 10:10:15 -05:00
Todd Gamblin	84c7e457e9	Merge pull request #302 from eschnett/eschnett/correct-boost ... Correct `join_path` in package boost	2016-01-06 04:34:44 -08:00
Todd Gamblin	a65fa54514	Merge pull request #270 from eschnett/eschnett/openssl-darwin ... Make OpenSSL build on Darwin	2016-01-06 04:07:16 -08:00
alalazo	7670dc7efc	glpk : added support for gmp	2016-01-06 10:05:48 +01:00
alalazo	24ba60168d	added package : glpk	2016-01-06 09:49:10 +01:00
Erik Schnetter	cfe54b201d	New package atop	2016-01-05 20:09:22 -05:00
Erik Schnetter	60d8413940	Support mbedtls, an alternative SSL library	2016-01-05 19:21:57 -05:00
Mike Nolta	2b801e2086	new package: py-astropy	2016-01-05 15:41:18 -05:00
Erik Schnetter	c18dfa058a	Add details to comment	2016-01-05 14:09:54 -05:00
Erik Schnetter	12632f16b8	Combine with other OpenSSL Darwin patch ... Set KERNEL_BITS. Don't use Darwin-specific configure script.	2016-01-05 13:17:17 -05:00
Erik Schnetter	25934200de	Merge branch 'develop' into eschnett/openssl-darwin	2016-01-05 13:09:57 -05:00
Erik Schnetter	24ced90913	Correct join_path in package boost	2016-01-05 09:40:30 -05:00
Todd Gamblin	20e8b67eb6	Merge pull request #297 from eschnett/eschnett/boost-darwin ... Support Darwin for Boost	2016-01-05 00:42:31 -08:00
Gregory Becker	ff82e41404	Merge branch 'externals' into crayport	2016-01-04 10:46:25 -08:00
Erik Schnetter	96e5905bce	Build multiple FFTW variants simultaneously ... FFTW can build only one floating point precision (float, double, long double, quad) at once, but they can all be installed simultaneously as the libraries have different names. It is common packages to decide only at run time which precision FFTW they need, and thus FFTW should offer all precisions at once.	2016-01-04 12:14:42 -05:00
Tom Scogland	133fda11f2	Merge remote branch 'origin/llvm-rework' into llvm-rework	2016-01-03 17:22:57 -08:00
Tom Scogland	884f317d50	tweak gold support, added to gcc ... The gold linker support and gold plugin variants now use the same name. Trying to apply use-flag-style discipline here despite the fact gold has other implications for clang, this way globally enabling gold will have a more consistent effect if that becomes possible. The gold support in gcc could use more testing to ensure it works consistently, but as long as a binutils including gold is used the gcc configure tends to pick it up, and it seems to work with 5.3.0 at least.	2016-01-03 17:22:13 -08:00
Tom Scogland	31803d10aa	bringing back configuration and build stages	2016-01-02 11:59:33 -08:00
Tom Scogland	356836ccbb	removed extraneous comment lines	2016-01-01 22:30:02 -08:00
Erik Schnetter	03537a6be4	Support Darwin for Boost ... Ensure that builds on Darwin use the "darwin" toolset. Also update Boost to 1.60.0.	2016-01-01 17:38:42 -05:00
Erik Schnetter	f5a49280c3	Enable C++ and Fortran languages by default	2016-01-01 17:26:49 -05:00
Todd Gamblin	3c64c18bfc	Merge pull request #274 from eschnett/eschnett/julia ... Add package for Julia	2015-12-31 15:46:52 -08:00
Todd Gamblin	48ebb25c25	Merge pull request #271 from eschnett/eschnett/pcre2 ... New package PCRE2	2015-12-31 15:40:03 -08:00
Todd Gamblin	7062b216b8	Merge pull request #258 from epfl-scitas/packages/scalasca ... Packages/scalasca	2015-12-31 15:27:39 -08:00
Tom Scogland	48f19b5fde	add the gold linker to binutils	2015-12-30 16:59:39 -08:00
Tom Scogland	5d89fb8dfa	ensure that clang-query gets installed	2015-12-30 16:59:39 -08:00
Tom Scogland	4ae98f8b21	significant llvm update ... This update significantly reworks the llvm and clang packages. The llvm package now includes variants allowing it to build and install any and all of: * clang * lldb * llvm's libunwind (why, WHY did they name it this?!?) * polly (including building it directly into the clang tools, 3.7.0 only) * clang extra tools * compiler-rt (sanitizers) * clang lto (the gold linker plugin that allows same to work) * libcxx/libcxxabi * libopenmp, also setting the default openmp runtime to same, when parameters happen this shoudl be an option of libomp or libgomp Ideally, this should have rpath setup like the gcc package does, but clang's driver has no support for specs as such, and no clearly equivalent mechanism either. If anyone has ideas on this, they would be welcome. One significant note related to gcc though, if you test this on LLNL systems, or anywhere that has multiple GCCs straddling the dwarf2 boundary and sharing a libstdc++, build a gcc with spack and use that to build clang. If you use a gcc4.8+ to build this with an older libstdc++ it will fail on missing unwind symbols because of the discrepancy. Resource handling has been changed slightly to move the unpacked archive into the target rather than use symlinks, because symlinks break certain kinds of relative paths, and orders resource staging such that nested resources are unpacked after outer ones.	2015-12-30 16:59:39 -08:00
Tom Scogland	01f811d546	legacy mysql bindings for python	2015-12-30 11:18:13 -08:00
Tom Scogland	31f674da3c	python libraries, libedit, and ninja ... A pile of libraries and tools, libedit is actually important as a replacement of readline for non-GPL projects. Also ninja may be worthwhile for some of the larger CMake projects, like llvm/clang.	2015-12-30 11:13:09 -08:00
Todd Gamblin	3e3667f254	Revert "removing check as it can cause failures in zsh" ... This reverts commit 496e485691. Undo overly large set of changes -- LLVM wasn't ready. Tom can recommit just the zsh stuff.	2015-12-30 10:20:27 -08:00
Tom Scogland	496e485691	removing check as it can cause failures in zsh	2015-12-30 10:13:46 -08:00
Todd Gamblin	ff0d871612	Remove mock_configs; tests no longer modify spack home directory.	2015-12-27 21:13:18 -08:00
Todd Gamblin	c65fd3a289	Merge branch 'develop' into mplegendre-multi_pkgsrc_roots ... Conflicts: lib/spack/spack/cmd/create.py lib/spack/spack/cmd/extensions.py lib/spack/spack/cmd/fetch.py lib/spack/spack/cmd/uninstall.py lib/spack/spack/config.py lib/spack/spack/database.py lib/spack/spack/directory_layout.py lib/spack/spack/packages.py lib/spack/spack/spec.py	2015-12-25 16:35:55 -08:00
Erik Schnetter	be12720eb7	Use filter_file instead of calling perl	2015-12-25 14:02:56 -05:00
Erik Schnetter	01f7e768f6	Enable several variants for HDF5 ... +cxx, +fortran: Enable support for the respective languages +threadsafe: Enable multi-threading	2015-12-23 22:49:42 -05:00
Erik Schnetter	51f546fe92	Add comments to package file	2015-12-23 18:21:41 -05:00
Erik Schnetter	309877088d	Build Julia	2015-12-23 18:21:40 -05:00
Erik Schnetter	a58dd8f6ab	Remove leftover debug statement	2015-12-23 18:19:26 -05:00
alalazo	21dae4577a	R : updated package	2015-12-23 10:20:13 +01:00
Erik Schnetter	60ec79eac3	New package PCRE2 ... This is a major update of the package PCRE. It seems both PCRE and PCRE2 can be installed at the same time; their APIs are different.	2015-12-22 18:53:43 -05:00
Erik Schnetter	a540a68561	Make OpenSSL build on Darwin	2015-12-22 18:51:49 -05:00
Todd Gamblin	d1d23ec5e6	Merge pull request #257 from eschnett/eschnett/hwloc-1.11.2 ... Update hwloc; don't require libpciaccess on OS X	2015-12-22 15:18:39 -08:00
Erik Schnetter	552d8ca5f0	Update rsync to 3.1.2	2015-12-22 16:40:09 -05:00
Erik Schnetter	6831ee6f0a	Skip installing libpciaccess on Darwin	2015-12-22 16:24:05 -05:00
Erik Schnetter	6dc1fc03c1	Update hwloc; don't require libpciaccess on OS X ... - hwloc 1.11.2 is available. - libpciaccess is not supported on OS X; don't require it there.	2015-12-22 15:50:46 -05:00
Todd Gamblin	100ada0ed6	Merge pull request #266 from LLNL/bugfix/python3-setuptools-conflict ... fix conflict with setuptools and cached pyc files	2015-12-22 09:19:57 -08:00
Gregory L. Lee	41fd380d1b	fixed site pyc regular expression	2015-12-22 09:15:47 -08:00
Todd Gamblin	b1d40efd99	Merge pull request #261 from LLNL/features/prefer-versions-in-packages ... Add ability to prefer particular versions in packages.	2015-12-22 08:25:52 -08:00
Gregory L. Lee	3db1c1761e	only ignore cached site.py file	2015-12-22 08:03:17 -08:00
Todd Gamblin	5bcec9289e	Merge pull request #263 from nolta/hdf5-mpi ... fix non-mpi hdf5 package build	2015-12-22 07:57:11 -08:00
Gregory L. Lee	d85a46380c	fix conflict with setuptools and cached pyc files	2015-12-22 06:50:18 -08:00
alalazo	fc43f3c730	valgrind : added package	2015-12-22 10:11:18 +01:00
Mike Nolta	bfc72c04fb	fix non-mpi hdf5 package build ... Fixes a couple of issues in c5b7eba457.	2015-12-21 18:59:01 -05:00
Todd Gamblin	fe0fdf60b4	Add ability to prefer particular versions in packages. ... - Adding `preferred=True` to a version directive will change its sort order in concretization. - This provides us a rudimentary ability to keep the Spack stack stable as new versions are added. - Having multiple stacks will come next, but this at least allows us to specify default versions of things instead of always taking the newest.	2015-12-21 15:35:47 -08:00
Gregory L. Lee	c3aaf005e2	new python versions	2015-12-21 15:14:59 -08:00
Gregory L. Lee	f9326053b9	remove numpy compiler patch	2015-12-21 13:56:19 -08:00
Todd Gamblin	73ea15db8e	Merge pull request #208 from epfl-scitas/features/resource_directive ... resource directive : implementation + clang / llvm use case	2015-12-21 10:34:16 -08:00
Todd Gamblin	d5e9279c1d	Merge pull request #215 from sjtbham/develop ... fix build to work against depends for modules created by setup.py and…	2015-12-21 09:24:16 -08:00
alalazo	a411c497ab	scalasca + dependencies : simplified build after #255	2015-12-21 16:10:55 +01:00
alalazo	0a191d6b09	scalasca : updated package build (depends on scorep, does not build twice).	2015-12-21 15:02:48 +01:00
Todd Gamblin	bb329d8a5c	Merge pull request #231 from epfl-scitas/packages/scotch ... scotch: adding dependencies + variants for mpi, shared, compression and esmumps	2015-12-20 14:29:19 -08:00
Todd Gamblin	d6edaa0970	Merge pull request #251 from epfl-scitas/packages/tau ... Improved build of tau and related dependencies	2015-12-20 14:26:40 -08:00
alalazo	14c9c61275	tau : scorep is now a variant	2015-12-20 17:38:35 +01:00
Nicolas Richart	27d52badb1	removing completely the write_make_inc function	2015-12-20 13:38:22 +01:00
Nicolas Richart	614c4d1876	moving write_make_inc into a patch function	2015-12-20 13:27:43 +01:00
Todd Gamblin	37db5928b7	Merge pull request #109 from justintoo/add-package-spot ... (Package) Add Spot C++ library (v1.99.3)	2015-12-19 21:06:22 -08:00
Todd Gamblin	22a4eb6b27	Merge pull request #226 from epfl-scitas/packages/mpiches ... mpich, mvapich2: changes the filter for the wrappers mpi{cc, cxx, f77, fc}	2015-12-19 21:04:08 -08:00
Todd Gamblin	1b086c928c	Merge pull request #227 from trws/fetch-deps ... fetch: add options to fetch missing or all deps	2015-12-19 21:02:42 -08:00
Todd Gamblin	3d3bea618e	Fix empty format strings in some packages.	2015-12-19 20:08:14 -08:00
Mike Nolta	e403576cf9	new package: cfitsio	2015-12-19 18:38:23 -05:00
Gregory L. Lee	8dd1f3ffa5	added mrnet 5.0.1	2015-12-19 07:43:34 -08:00
alalazo	f3837dd686	tau : removed direct otf2 support	2015-12-18 16:15:30 +01:00
alalazo	dfbf1b2205	Merge branch 'develop' of https://github.com/alalazo/spack into packages/tau	2015-12-18 13:00:43 +01:00
alalazo	8dc32aeedb	Improved tau build and added optional dependencies	2015-12-18 12:58:29 +01:00
Todd Gamblin	3198522a7f	Merge pull request #236 from nolta/cmake-enable-ssl ... cmake: enable ssl, for https downloads	2015-12-17 23:03:31 -08:00
David Beckingsale	f91e1ae83f	Added Lmod package	2015-12-17 15:26:47 -08:00
Todd Gamblin	4d982f5aca	Merge pull request #86 from jgalarowicz/develop ... Add support for Krell Institute related products.	2015-12-17 12:35:30 -08:00
Jim Galarowicz	c02cbaecd8	Change back the previous boost change and change the mrnet variant name to lwthreads.	2015-12-17 07:41:49 -08:00
Todd Gamblin	85c02dbe7b	Merge pull request #167 from mathstuf/hdf5-fix-mpi-dependency ... Hdf5 fix mpi dependency	2015-12-16 12:03:22 -08:00
Todd Gamblin	9ac4c730fb	Merge pull request #241 from epfl-scitas/packages/gnuplot ... gnuplot : added package	2015-12-16 11:37:26 -08:00
alalazo	cc9266e56c	gsl : added package	2015-12-16 12:45:58 +01:00
Massimiliano Culpo	d5018e77a3	gnuplot : modifications to build on RHLE 6	2015-12-16 09:32:48 +01:00
Mike Nolta	917fb328bb	cmake: enable ssl, for https downloads ... By default cmake builds its own curl, without SSL support. This patch enables SSL when building cmake, fixing the following error: error: downloading 'https://...' failed status_code: 1 status_string: "Unsupported protocol" log: Protocol "https" not supported or disabled in libcurl	2015-12-15 12:39:30 -05:00
alalazo	0a0cd4b9d3	gnuplot : added package	2015-12-15 16:29:36 +01:00
Nicolas Richart	ed7db8e489	adding external dependencies + variants for mpi, shared and compression	2015-12-14 21:59:40 +01:00
alalazo	1bfb16592b	fftw : added package	2015-12-14 16:31:02 +01:00
Jim Galarowicz	8df4fd9e94	Fix build of krell tools to use spack with minimal impact on rest of spack packages.	2015-12-13 17:13:34 -08:00
Jim Galarowicz	0fc83ba999	Fix merge conflict with papi package.	2015-12-11 17:23:54 -08:00
Ben Boeckel	6f978af77b	hdf5: update dependents to declare MPI support	2015-12-10 11:53:40 -05:00
Ben Boeckel	79a641ccf1	paraview: update hdf5 comment	2015-12-10 11:51:54 -05:00
Ben Boeckel	c5b7eba457	hdf5: make mpi support optional	2015-12-10 11:51:54 -05:00
Tom Scogland	786f4cd2c2	add dependency fetching to mirror creation	2015-12-10 08:32:51 -08:00
Gregory L. Lee	3163d016db	install python files to libxml2 prefix instead of python prefix and ignore non-python files when activating	2015-12-09 14:10:05 -08:00
Nicolas Richart	0daa08416a	corrected filter_compilers + added it for mvapich2	2015-12-09 20:00:54 +01:00
Todd Gamblin	f6eb000381	Merge pull request #225 from epfl-scitas/packages/git ... Adding https support in git even if system lib are missing	2015-12-09 10:59:47 -08:00
alalazo	20e67bc5e6	clang : solve the issue with missing default include paths for OpenMP and libc++ ... resource : support for finer grained linking of resources	2015-12-09 17:15:26 +01:00
Nicolas Richart	31863c68d8	Adding curl and expat support to git for https repos	2015-12-09 11:00:33 +01:00
Todd Gamblin	e46af913be	Merge pull request #148 from PaulDapolito/glib-dep ... added zlib dependency to glib package specification	2015-12-09 01:44:00 -08:00
Todd Gamblin	8ebac18f50	Merge pull request #224 from epfl-scitas/packages/gdb ... gdb : added package	2015-12-09 01:35:04 -08:00
Todd Gamblin	c41b9b7ddc	Change github.com/scalability-llnl to github.com/llnl everywhere.	2015-12-09 01:24:15 -08:00
alalazo	4d5eb4ce7d	gdb : added package	2015-12-09 09:06:10 +01:00
alalazo	c5b9732aed	Should fix #177 ... gcc : changed objdir to something out of srcdir and added '--with-sysroot=/' binutils : added '--with-sysroot=/'	2015-12-08 14:06:04 +01:00
Todd Gamblin	e7ab8d476d	Merge pull request #219 from eschnett/eschnett/gmp ... Update gmp to 6.1.0	2015-12-07 16:46:44 -08:00
Todd Gamblin	6bc86a6baa	Merge pull request #220 from eschnett/eschnett/mpc ... Update mpc to 1.0.3	2015-12-07 16:46:32 -08:00
Todd Gamblin	b0434fa486	Merge pull request #221 from davidbeckingsale/features/cleverleaf-boost ... Update CleverLeaf package to use Boost and fix SAMRAI MPI usage	2015-12-07 16:46:15 -08:00
Matthew LeGendre	f8e046bb33	Fix issue with gcc 5.x not building on RHEL6	2015-12-07 15:49:47 -08:00
Gregory L. Lee	1a22a507d6	mesa requires +python variant of libxml2	2015-12-07 15:36:36 -08:00
David Beckingsale	36272c8136	Fix MPI selection in SAMRAI and remove narrow dependency specification	2015-12-07 14:58:16 -08:00
David Beckingsale	77bf133cd2	Update CleverLeaf package to use Boost and fix SAMRAI MPI usage	2015-12-07 14:33:31 -08:00
Erik Schnetter	aff95ee587	Update mpc to 1.0.3	2015-12-05 11:23:40 -05:00
Erik Schnetter	29537b9991	Update gmp to 6.1.0	2015-12-05 11:21:47 -05:00
Gregory L. Lee	5891847ae4	added py-pillow and updated py-basemap to depend on it	2015-12-03 15:35:28 -08:00
Gregory L. Lee	a56c7e5f1a	Merge branch 'develop' of https://github.com/scalability-llnl/spack into develop	2015-12-03 15:02:49 -08:00
Gregory L. Lee	0f4efc018d	updated package versions	2015-12-03 15:01:44 -08:00
Nicolas Richart	1a132e4fdb	Missing declaration of the debug variant	2015-12-02 16:18:29 +01:00
Simon Thompson	aa137d8be0	fix build to work against depends for modules created by setup.py and add python3 support	2015-12-02 14:20:11 +00:00
Nicolas Richart	4bb6f23ae1	Adding variant for mpi and python + compression for iostream	2015-12-02 13:26:00 +01:00
Massimiliano Culpo	39a3cfd4d9	reource directive accepts 'basename' keyword ... llvm : libc++ variant	2015-12-02 12:24:37 +01:00
Mario Melara	0544b164fc	Updated script of mini-xml for adios package	2015-12-01 11:59:49 -08:00
Mario Melara	4e0d47f1dd	building with GCC needs special variables added. Intel compilers build just fine	2015-12-01 11:59:19 -08:00
Massimiliano Culpo	a173ab1e31	clang : default OpenMP is libomp	2015-12-01 12:16:08 +01:00
Kevin Huck	cd1207329b	Updating the OMPT hash again...	2015-11-30 10:32:07 -08:00
Kevin Huck	d5c7cd5e50	Had to force a patch to the OMPT support, so the hash for v0.1 has ... changed.	2015-11-30 09:48:15 -08:00
Tom Scogland	b253308eee	returning flux to a building state for web release ... Flux package reworked to include all new dependencies, fixed issues with a clean-build of hwloc, lua and czmq as well that prevented flux from building cold on a minimal system.	2015-11-29 19:22:31 -08:00
Todd Gamblin	7383bd393e	Fixed bug #42: problem with satisfies() for virtual dependencies. ... - _cross_provider_maps() had suffered some bit rot (map returned was ill-formed but still worked for cases with one vdep) - ProviderIndex.satisfies() was only checking whether the result map was non-empty. It should check whether all common vdeps are *in* the result map, as that indicates there is *some* way to satisfy *all* of them. We were checking whether there was some way to satisfy *any one* of them, which is wrong. - Above would cause a problem when there is more than one vdep provider. - Added test that covers this case. - Added `constrained()` method to Spec. Analogous to `normalized()`: `constrain():constrained() :: normalize():normalized()`	2015-11-27 23:06:18 -08:00
Todd Gamblin	89d5127900	New, cleaner package repository structure. ... Package repositories now look like this: top-level-dir/ repo.yaml packages/ libelf/ package.py mpich/ package.py ... This leaves room at the top level for additional metadata, source, per-repo configs, indexes, etc., and it makes it easy to see that something is a spack repo (just look for repo.yaml and packages).	2015-11-26 14:19:27 -08:00
Massimiliano Culpo	1fe626ec7c	resource directive : sketch of implementation + clang / llvm use case	2015-11-26 17:53:33 +01:00
Tom Scogland	f8ffb005c8	make cram an extension of python	2015-11-25 15:10:18 -08:00
Todd Gamblin	c526c71f56	Merge pull request #201 from alfredo-gimenez/develop ... Fixed Mitos dependency and added new version	2015-11-24 16:12:12 -08:00
Alfredo Gimenez	a0d388875e	Fixed Mitos dependency and added new version	2015-11-24 15:12:31 -08:00
Tom Scogland	a1553dd12b	adding google sparsehash and cityhash libraries	2015-11-24 09:23:36 -08:00
Todd Gamblin	e2412e3f21	Merge branch 'eschnett-openblas' into develop	2015-11-24 00:52:48 -08:00
Todd Gamblin	52cce2d710	Revert "WIP: openssl: set KERNEL_BITS to make ./config work"	2015-11-24 00:30:08 -08:00
Erik Schnetter	1d90d98e40	Remove commented-out code	2015-11-23 20:32:06 -05:00
Kevin Huck	4dd47fbc78	cleaning up commits for merge request	2015-11-23 16:16:52 -08:00
Todd Gamblin	98ccad8105	Merge pull request #189 from mathstuf/openssl-use-64-bits ... WIP: openssl: set KERNEL_BITS to make ./config work	2015-11-23 16:09:28 -08:00
Todd Gamblin	de2213a621	Merge pull request #188 from mathstuf/python-osx ... python: target OS X 10.6	2015-11-23 16:08:56 -08:00
Todd Gamblin	583b8e3ade	Merge pull request #187 from mathstuf/dbus-osx-disable-launchd ... dbus: disable launchd support	2015-11-23 16:08:35 -08:00
Todd Gamblin	b5fffc71c9	Merge pull request #168 from mathstuf/libxml2-drop-python-dep ... Libxml2 drop python dep	2015-11-23 16:08:24 -08:00
Todd Gamblin	0011903e23	Merge pull request #165 from mathstuf/paraview-update-deps ... Paraview update deps	2015-11-23 16:04:03 -08:00
Todd Gamblin	9bc27561ec	Merge pull request #164 from mathstuf/matplotlib-optional-deps ... Matplotlib optional deps	2015-11-23 16:03:31 -08:00
Todd Gamblin	76100a6f08	Merge pull request #158 from davidbeckingsale/features/cleverleaf ... Add CleverLeaf package	2015-11-23 16:00:39 -08:00
David Beckingsale	38b83362b6	Updated url and description	2015-11-23 15:58:33 -08:00
Todd Gamblin	c13329c25a	Merge pull request #155 from epfl-scitas/packages/mvapich2 ... packages/mvapich2 : added support for process managers and network types	2015-11-23 15:53:53 -08:00
Todd Gamblin	6798c177c6	Merge pull request #157 from alfredo-gimenez/develop ... Added Python Twisted library	2015-11-23 15:51:57 -08:00
Todd Gamblin	8fbd79fa2e	Merge pull request #198 from eschnett/update-papi ... Update PAPI	2015-11-23 15:42:09 -08:00
Mario Melara	8f56f5cfcc	Added path to netcdf and hdf5 using the env vars NETCDF_DIR and HDF5_DIR.	2015-11-23 14:02:59 -08:00
Erik Schnetter	60fd7e2268	Update PAPI	2015-11-23 16:50:11 -05:00
Erik Schnetter	cb21a5b309	Add OpenBLAS	2015-11-23 16:48:06 -05:00
Erik Schnetter	1330c10fc8	Don't use https for downloading	2015-11-23 16:00:10 -05:00
Todd Gamblin	be92d0b6a4	Merge pull request #194 from trws/judy ... add judy dynamic array/meta-trie/hash table lib	2015-11-23 10:10:46 -08:00
Todd Gamblin	7392e1af59	Merge pull request #190 from bhatele/feature/networktools ... Add damselfly package	2015-11-23 10:10:12 -08:00
Tom Scogland	34700d560f	add judy dynamic array/meta-trie/hash table lib ... Just adding judy.	2015-11-20 12:15:32 -08:00
Abhinav Bhatele	4edcc59c3d	Add damselfly package	2015-11-19 23:05:21 -08:00
Ben Boeckel	c023b1000e	python: target OS X 10.6 ... Targeting anything older lacks rpath stuff which configure uses.	2015-11-19 17:52:59 -05:00
Ben Boeckel	150e43f3fd	WIP: openssl: set KERNEL_BITS to make ./config work ... Why OpenSSL refuses to build without this (it explicitly warns about it) is a mystery.	2015-11-19 17:51:44 -05:00
Ben Boeckel	b6d368d7a0	dbus: disable launchd support	2015-11-19 17:50:30 -05:00
Todd Gamblin	34e445a480	Merge pull request #176 from truatpasteurdotfr/develop ... jdk: updated to version 8u66	2015-11-18 15:58:33 -06:00
Todd Gamblin	5086a1e825	Merge pull request #178 from eschnett/develop ... Update HDF5 to 1.8.16	2015-11-18 15:58:13 -06:00
Todd Gamblin	38ce53bc85	Merge pull request #179 from eschnett/update-hwloc ... Update hwloc to 1.11.1	2015-11-18 15:58:06 -06:00
Todd Gamblin	89c11221ed	Merge pull request #181 from eschnett/update-openmpi ... Update OpenMPI to 1.10.1; correct configure error in OpenMPI	2015-11-18 15:57:56 -06:00
Todd Gamblin	025566b494	Merge pull request #182 from eschnett/hdf5-mpi ... HDF5: Support non-MPICH MPI implementations	2015-11-18 15:57:29 -06:00
Todd Gamblin	4f8380959c	Merge pull request #183 from eschnett/add-jemalloc ... Add jemalloc package	2015-11-18 15:56:46 -06:00
Erik Schnetter	2e51e207f9	Update cmake to 3.4.0	2015-11-18 15:17:48 -05:00
Erik Schnetter	cbc552e91e	Add jemalloc package	2015-11-18 13:43:49 -05:00
Erik Schnetter	511ffc3b44	HDF5: Support non-MPICH MPI implementations	2015-11-18 13:33:04 -05:00
Erik Schnetter	e36fd7d29f	Update OpenMPI to 1.10.1; correct configure error in OpenMPI	2015-11-18 13:13:13 -05:00
Erik Schnetter	af9fe0a038	Update hwloc to 1.11.1	2015-11-18 12:37:54 -05:00
Erik Schnetter	893e05540c	Update HDF5 to 1.8.16	2015-11-18 09:55:45 -06:00
Tru Huynh	b2a85bc12e	updated to version 8u66	2015-11-18 10:02:22 +01:00
Erik Schnetter	cc49f9b657	Update OpenSSL package	2015-11-17 18:28:20 -05:00
Erik Schnetter	1003b847b6	Remove comment	2015-11-17 17:10:04 -05:00
Erik Schnetter	ad0a1bf70d	Add rsync package	2015-11-17 16:47:47 -05:00
Ben Boeckel	b98c25c1fb	paraview: update matplotlib and numpy deps	2015-11-16 17:07:28 -05:00
Ben Boeckel	5eb8e1eec8	py-pyside: update docstring	2015-11-16 17:07:27 -05:00
Ben Boeckel	d40897404b	py-matplotlib: make the gui and ipython support optional ... ipython, nice as it is, is not required to use matplotlib. The UI bits are also optional and dragging in Qt and Tcl/Tk for the library shouldn't be the default.	2015-11-16 17:07:27 -05:00
Ben Boeckel	485528cffa	paraview: configure the python and MPI executables	2015-11-16 17:05:17 -05:00
Ben Boeckel	d3ead7061e	paraview: require qt4 ... Qt5 has bugs which need at least 5.6.0 for a fix.	2015-11-16 17:04:35 -05:00
Ben Boeckel	45d981caab	paraview: add dependency on libxml2 back	2015-11-16 11:45:27 -05:00
Ben Boeckel	ca01adb503	libxml2: make the python dependency optional ... Also turn it off by default since it is usually not necessary. Anything needing the Python bindings should declare it explicitly.	2015-11-16 11:30:35 -05:00
Tom Scogland	8feaefadcf	updating lua package to install in correct order	2015-11-13 09:43:03 -08:00
Todd Gamblin	55662eca69	Merge branch 'develop' into mplegendre-multi_pkgsrc_roots ... Conflicts: lib/spack/spack/__init__.py lib/spack/spack/directives.py lib/spack/spack/packages.py	2015-11-12 15:16:06 -08:00
David Beckingsale	679b617649	Add CleverLeaf package	2015-11-11 12:33:08 -08:00
Gregory Becker	db1b21b9aa	reclaimed the = sign. Architectures now specified by +arch= instead. Decided to prepend flag names with + for clarity in spec names and ease of parsing. Also generalized variants, although there is not yet a way to specify a generalized (name=value) variant.	2015-11-10 15:45:22 -08:00
Alfredo Gimenez	666d9e88f5	Added Python Twisted library	2015-11-10 15:37:09 -08:00
Massimiliano Culpo	27c64f7740	mvapich2 : changed method name for consistency. Removed possibly duplicated flags	2015-11-09 16:02:38 +01:00
Massimiliano Culpo	42bc552dd7	mvapich2 : variant strings are associated with a named variable	2015-11-09 16:02:25 +01:00
Massimiliano Culpo	79ed9de4c1	mvapich2 : added variants for different network types	2015-11-09 16:02:12 +01:00
Massimiliano Culpo	0ae05fdf99	mvapich2 : added variants for different process managers	2015-11-09 16:01:56 +01:00
Massimiliano Culpo	4a72bd7919	mvapich2 : fixed typos. Added FIXME	2015-11-09 16:01:27 +01:00
Massimiliano Culpo	076eaba6e3	mvapich2 : fixed some issues with the package. Needs further improvment with respect to network and pm	2015-11-09 16:00:03 +01:00
Jim Galarowicz	0ced060b87	cbtf did not compile with boost 1.59, so reverted to boost 1.50 temporarily until we fix the cbtf/boost compile issues.	2015-11-06 15:15:38 -08:00
Jim Galarowicz	2aa501bf3d	Update the checksum value for the new tarball	2015-11-06 14:19:00 -08:00
Jim Galarowicz	046b348bd3	Merge remote-tracking branch 'upstream/develop' into develop ... Get up to date with rest of develop repository.	2015-11-06 11:55:49 -08:00
Jim Galarowicz	aa9b14aff4	Match up with the new binutils package file. It does what OSS needs w.r.t. libiberty.	2015-11-06 11:55:20 -08:00
Jim Galarowicz	7e6b7795f1	Match up with the new binutils package file. It does what OSS needs w.r.t. libiberty.	2015-11-06 11:53:53 -08:00
Jim Galarowicz	d6a2ab08ac	Match up with the new binutils package file. It does what OSS needs w.r.t. libiberty.	2015-11-06 11:47:00 -08:00
Mario Melara	e0498ce54a	mxml is adios's package dependency	2015-11-05 13:43:11 -08:00
Mario Melara	0fcb368f47	Adding adios package to spack's package list	2015-11-05 13:42:50 -08:00
Todd Gamblin	9474b8cdac	Merge pull request #153 from ktkirk/libxml2 ... Was getting system python over spack python	2015-11-05 10:12:55 -08:00
Gregory Lee	886861c9f4	Merge pull request #151 from scalability-llnl/features/bzip2-mac ... Modified bzip2 package to work properly on macs.	2015-11-05 09:29:47 -08:00
David Beckingsale	19876161c7	Update ZSH version	2015-11-05 07:42:18 -08:00
Kelly T. Kirk	618a1c7119	Was getting system python over spack python	2015-11-05 08:01:00 -05:00
Todd Gamblin	1c4ef29962	Add Sphinx package	2015-11-04 17:55:43 -08:00
Todd Gamblin	f201bfb998	Modified bzip2 package to work properly on macs.	2015-11-04 17:43:22 -08:00
Paul Dapolito	16f0ece75b	added zlib dependency to glib package specification	2015-11-01 19:55:14 -08:00
Todd Gamblin	58adff307f	Merge pull request #142 from mathstuf/dbus-disable-systemd ... dbus: disable systemd	2015-10-29 00:07:03 -07:00
Todd Gamblin	5d626ac561	Merge pull request #141 from epfl-scitas/packages/clang ... clang : updated versions + depends_on(python)	2015-10-29 00:06:50 -07:00
Todd Gamblin	11c3a9f60d	Merge pull request #143 from mathstuf/update-ncurses ... ncurses: update package	2015-10-29 00:03:40 -07:00
Todd Gamblin	130d2d8de0	Merge pull request #144 from mathstuf/add-paraview ... paraview: add package	2015-10-29 00:03:15 -07:00
Todd Gamblin	dab230845d	Merge pull request #121 from epfl-scitas/issues/gcc ... GCC : added variant to packages for binutils, solve linking time error	2015-10-28 23:29:33 -07:00
Ben Boeckel	ddbfc40303	paraview: add package ... A first attempt; builds successfully. Some dependencies have hard-coded dependencies where they shouldn't (e.g., hdf5 -> mpi, libxml -> python), but that's a different rabbit hole.	2015-10-27 15:37:31 -04:00
Ben Boeckel	b88da83a12	dbus: disable systemd ... Not necessary in spack. Also forcefully installs outside of the prefix.	2015-10-27 13:51:23 -04:00
Ben Boeckel	e8f5a85ffd	ncurses: update package	2015-10-27 13:50:59 -04:00
Massimiliano Culpo	3913c10afb	clang : updated versions and dependencies ... llvm : added dependency on 'python@2.7:' for better portability	2015-10-27 08:04:55 +01:00
Massimiliano Culpo	8b22a4f4f8	llvm : updated versions	2015-10-27 08:04:20 +01:00
Paul Dapolito	cd2a23384f	Added v5.2.2 for xz library	2015-10-26 14:28:56 -07:00
Massimiliano Culpo	e812c35689	GCC : removed binutils variant	2015-10-23 10:11:38 +02:00
Todd Gamblin	f76b3890ff	Merge pull request #137 from davidbeckingsale/features/ompi-wrappers ... Filter wrapper data to use correct compilers in OpenMPI	2015-10-22 16:01:55 -04:00
David Beckingsale	9f496e5efa	Replace compiler in f90 and f77 wrappers if they exist	2015-10-22 09:50:02 -07:00
David Beckingsale	41c01b523f	Filter wrapper data to use correct compilers in OpenMPI	2015-10-22 09:13:20 -07:00
Todd Gamblin	cbcc6fc9f5	Merge branch 'khuck-develop' into develop, github PR #136	2015-10-22 08:27:23 -07:00
Kevin Huck	7cb557cba7	Adding dependency on ompt-openmp, now that it is a package.	2015-10-22 08:06:31 -07:00
Kevin Huck	caf93cc408	Adding package for OMPT support in the LLVM/Clang OpenMP runtime, ... which gives OMPT support for applications built with GCC, Intel or LLVM/Clang.	2015-10-22 08:03:50 -07:00
Massimiliano Culpo	e6a44bd8ac	GCC : removed dependency on libelf. Removed isl variant	2015-10-22 15:55:43 +02:00
Massimiliano Culpo	f475ec4ce6	Merge branch 'develop' of https://github.com/scalability-llnl/spack into issues/gcc ... Conflicts: var/spack/packages/gcc/package.py GCC : removed dependency on libelf. Removed isl variant	2015-10-22 15:53:44 +02:00
Kevin Huck	24838a62b4	Changed date formatting.	2015-10-22 06:02:56 -07:00
Kevin Huck	2a61ff0794	Changing git checkout from "master" to commit ... d2e66ddde689120472fc57fc546d8cd80aab745c	2015-10-22 03:57:33 -07:00
Kevin Huck	fb9eca4226	Added an APEX package, but it is still using the git master instead ... of a release.	2015-10-21 19:35:31 -07:00
Kevin Huck	c082abfb65	Modified the binutils package to use --enable-shared. Required by tools that ... use binutils and get this error (or equivalent): "relocation R_X86_64_32S against `bfd_errmsgs' can not be used when making a shared object; recompile with -fPIC"	2015-10-21 18:32:57 -07:00
Todd Gamblin	1f662465c2	Merge pull request #119 from mamelara/develop ... Added current version 3.2 of libffi version 3.1 has a bug	2015-10-21 16:07:26 -04:00
Todd Gamblin	c8f01480d6	Merge pull request #128 from mathstuf/netcdf-new-linker-mpi ... netcdf: link to MPI	2015-10-21 16:02:59 -04:00
Todd Gamblin	c388cbe8e4	Merge pull request #131 from jsquyres/pr/openmpi-update ... openmpi: update package versions of Open MPI	2015-10-21 15:59:12 -04:00
Todd Gamblin	6773a2b3bf	Merge pull request #132 from jsquyres/pr/mpich-mpi-version-fix ... mpich: add fine-grained MPI conformance versions	2015-10-21 15:58:41 -04:00
Todd Gamblin	59dfb1c175	Merge pull request #134 from davidbeckingsale/features/ncdu ... Added ncdu package	2015-10-21 15:58:02 -04:00
Todd Gamblin	345fd3b285	Merge pull request #133 from epfl-scitas/packages/trilinos ... Packages/trilinos	2015-10-21 15:54:13 -04:00
Kevin Huck	e0e79a2cb3	Adding package for activeharmony.	2015-10-21 11:56:01 -07:00
David Beckingsale	7e2f3cff44	Added ncdu package	2015-10-19 15:41:46 -07:00
Massimiliano Culpo	ec5560374c	glm : added basic configuration for the package	2015-10-19 13:56:08 +02:00
Massimiliano Culpo	aab7102b9b	matio : added basic configuration for the package	2015-10-19 13:55:44 +02:00
Massimiliano Culpo	3a4bdf1856	trilinos : first version that compiles on bellatrix	2015-10-19 13:48:46 +02:00
Massimiliano Culpo	ff0d039a1f	trilinos : prototype for the whole package	2015-10-19 13:48:38 +02:00
Massimiliano Culpo	f4460894be	hdf5 : updated version ... mpich : updated version trilinos : created stub	2015-10-19 13:48:24 +02:00
Todd Gamblin	44ba16a391	Add libiberty option to binutils	2015-10-17 17:04:34 -07:00
Jeff Squyres	67b94acd42	mpich: add fine-grained MPI conformance versions ... Similar to the Open MPI and MVAPICH packages. Signed-off-by: Jeff Squyres <jsquyres@cisco.com>	2015-10-17 07:06:06 -04:00
Jeff Squyres	43f58d9f61	openmpi: update the MPI conformance for each Open MPI version	2015-10-16 15:27:22 -04:00
Jeff Squyres	f39e40664f	openmpi: add v1.10.0 and update v1.8.2->v1.8.8	2015-10-16 15:26:58 -04:00
Ben Boeckel	9ec4ae83af	netcdf: link to MPI ... Newer GNU linker refuses to use transitive linking; if netcdf calls MPI_Allreduce, it must link the providing library directly. Also switched to CMake because I don't know autoconf well enough to know how to put MPI stuff into it.	2015-10-15 09:20:16 -04:00
Gregory L. Lee	5dd39bfca5	bug fix for github issue 122	2015-10-08 08:12:30 -07:00
Todd Gamblin	5d64012868	Merge branch 'features/libxcb-1.11.1' into develop	2015-10-08 00:13:47 -07:00
Mario Melara	06fe879745	Merge branch 'features/crayproto' of https://github.com/scalability-llnl/spack into develop	2015-10-07 14:55:05 -07:00
Massimiliano Culpo	17de9a37f1	gcc : fixed spec file	2015-10-06 18:49:18 +02:00
Massimiliano Culpo	d44571257a	spec file : everything is dumped, only link rule is modified	2015-10-06 18:49:04 +02:00
Massimiliano Culpo	f068d1ba57	GCC : added variants for libelf, binutils, isl. gcc@5.0: still has issues	2015-10-06 18:48:47 +02:00
Gregory L. Lee	6fcf16b710	added libxcb version 1.11.1	2015-10-05 12:59:26 -07:00
Matthew LeGendre	18f0b24a7f	Add tests for spack external dependencies, plus fixes for issues found by those tests.	2015-10-05 11:37:36 -07:00
Matthew LeGendre	650c9d4e36	Allow spack to build against external non-spack-installed packages.	2015-10-05 11:37:36 -07:00
Matthew LeGendre	ee68a76a19	Bug fixes from testing spack preferred packages	2015-10-05 11:36:06 -07:00
karenyyng	f4e72f33c8	added dependencies for py-h5py	2015-10-05 08:24:33 -07:00
karenyyng	c809cc9273	clean up package.py file and remove duplicate file	2015-10-03 19:24:15 -07:00
karenyyng	f3254ff02d	removed package for python packages with problematic / duplicate names	2015-10-03 19:22:53 -07:00
karenyyng	e9f7d033ff	make sure submodule is added in the correct location	2015-10-03 19:13:08 -07:00
karenyyng	79808da760	added a bunch of packages and added submodule	2015-10-03 18:47:36 -07:00
Mario Melara	75d30b08fb	Added current version 3.2 of libffi version 3.1 has a bug that interferes with glib	2015-10-01 21:51:55 -07:00
Mario Melara	c6cd8ae243	Use more recent version of libffi. 3.1 has a known bug that is fixed in current version	2015-10-01 21:35:25 -07:00
Adam Moody	5563c66675	update scr to 1.1.8	2015-09-29 18:18:34 -07:00
Mario Melara	13eb461ec3	Adding bowtie2 package along with patch	2015-09-24 11:21:54 -07:00
Mario Melara	521632b3dc	Added samtools bioinformatics software	2015-09-23 16:30:44 -07:00
Todd Gamblin	6d4eed3845	Merge pull request #102 from RasmusWL/features/fish ... Add fish (shell) package	2015-09-23 01:37:59 -07:00
Todd Gamblin	82ea7aec51	Merge pull request #106 from justintoo/add-package-doxygen ... (Package) Add Doxygen (v1.8.10)	2015-09-23 01:37:31 -07:00
Todd Gamblin	d474eeb424	Merge pull request #110 from scalability-llnl/features/boostupdate ... update boost package for new releases	2015-09-23 00:32:22 -07:00
Todd Gamblin	5d6baacc56	Merge pull request #111 from scalability-llnl/features/protobuf ... add protobuf package	2015-09-23 00:31:26 -07:00
Todd Gamblin	46cf0a23d9	Merge pull request #112 from scalability-llnl/features/glog ... add glog package	2015-09-23 00:30:37 -07:00
Todd Gamblin	f02af701e5	Merge pull request #113 from scalability-llnl/features/gflags ... add gflags package	2015-09-23 00:29:50 -07:00
Todd Gamblin	5f826a0ab7	Merge pull request #114 from scalability-llnl/features/snappy ... Features/snappy	2015-09-23 00:27:27 -07:00
Adam Moody	84823ed828	add lmdb package	2015-09-22 12:17:01 -07:00
Adam Moody	3ade141829	add leveldb package	2015-09-22 11:59:09 -07:00
Adam Moody	30acc6f2f0	add snappy package	2015-09-21 16:45:59 -07:00
Adam Moody	22ba02b22b	add gflags package	2015-09-21 16:40:23 -07:00
Adam Moody	b5d7cd55ce	add glog package	2015-09-21 16:30:11 -07:00
Adam Moody	e4e22ed17e	add protobuf package	2015-09-21 16:19:50 -07:00
Justin Too	3691201b4f	(Package) Add Spot C++ library (v1.99.3)	2015-09-21 11:04:56 -07:00
Justin Too	99ca0f3153	(Package) Add Doxygen (v1.8.10)	2015-09-11 20:29:18 +00:00
Rasmus Wriedt Larsen	b06117f77a	Add fish (shell) package	2015-09-03 14:19:27 -07:00
Adam Moody	ac088bae6a	update boost	2015-09-01 16:02:14 -07:00
Todd Gamblin	6af49d41fd	Add elfutils.	2015-08-27 00:10:53 -07:00
Todd Gamblin	13fd742610	Merge branch 'features/pidx' into develop	2015-08-26 23:48:52 -07:00
Todd Gamblin	babbc5bb45	Minor fix-ups for PIDX	2015-08-26 23:48:36 -07:00
Gregory L. Lee	2c3e7a6f87	added graphviz dependency and dysect variant to STAT	2015-08-25 11:48:12 -07:00
Gregory L. Lee	1c9c5a385d	added graphviz and dependencies	2015-08-25 11:38:39 -07:00
Todd Gamblin	360b307f68	Save progress. import gov.llnl.spack.mpich works.	2015-08-24 09:14:16 -07:00
Gregory L. Lee	689dbb8fb6	use filter_file instead of patch	2015-08-24 08:51:41 -07:00
Jim Galarowicz	24c609b6df	Updates to the Krell related product packages.	2015-08-22 09:34:44 -05:00
Cyrus Harrison	8821715377	add version-based url map for cmake, provide md5 for cmake 3.3.1	2015-08-19 14:18:02 -07:00
Jim Galarowicz	fe9959d4da	Merge remote-tracking branch 'upstream/develop' into develop	2015-08-18 08:05:25 -05:00
Peer-Timo Bremer	40b21d7cbe	Initial version of PIDX package	2015-08-17 15:38:12 -07:00
Gregory L. Lee	bd1cd83d71	added lapack and blas deps, fixed gfortran compiler dependency	2015-08-17 11:54:14 -07:00
Todd Gamblin	a2f2e6a4ff	Save changes to external repo integration	2015-08-16 12:54:02 -07:00
Matthew LeGendre	c7b8d09c7f	Add packagerepos to spack, allowing for creating multiple package repositories.	2015-08-16 12:48:32 -07:00
Gregory L. Lee	92ea86dc36	moved lapack package to netlib-lapack	2015-08-14 16:30:35 -07:00
Gregory L. Lee	ec47ab16ce	updated blas and lapack packages	2015-08-14 16:27:51 -07:00
Todd Gamblin	c8f65c1530	Fix 2.6 incompatibility	2015-08-13 00:21:02 -07:00
Todd Gamblin	17c2a0d6f3	Merge pull request #92 from trws/flux-build ... pre-alpha flux build and requisite dependencies	2015-08-13 00:02:49 -07:00
Todd Gamblin	58f848fa29	Merge pull request #94 from alfredo-gimenez/dev-pandas ... Fixed py-pandas package	2015-08-13 00:00:35 -07:00
Todd Gamblin	f34b04e555	Merge pull request #87 from alfredo-gimenez/develop ... Added gui and cscope features to Vim package	2015-08-12 23:58:27 -07:00
Alfredo Gimenez	d6bf9c9887	Cscope vim variant depends on cscope	2015-08-07 07:58:04 -07:00
Alfredo Gimenez	d017c5080a	Fixed py-pandas package	2015-08-07 00:03:14 -07:00
Alfredo Gimenez	067ecb90b9	Added cscope (dependency for vim+cscope)	2015-08-06 09:28:28 -07:00
Tom Scogland	7182671f8f	pre-alpha flux build and requisite dependencies ... NOTE: the ncurses package now installs *BOTH* versions, wide and non-wide character for compatibility with packages that require either one. It may be desirable for this to be an option in the future.	2015-08-03 11:59:52 -07:00
Mike Nolta	7ebb4fcedc	add missing gmp dependency to mpfr package	2015-08-01 16:00:13 -04:00
Tom Scogland	016eef6a16	adding the bear compilation database generator	2015-07-29 14:21:03 -07:00
Alfredo Gimenez	00ab6eb616	Vim with added feature support, including gvim	2015-07-23 11:38:02 -07:00
Tom Scogland	6ad5210216	adding a zsh package	2015-07-22 11:35:51 -07:00
Jim Galarowicz	9fee7be695	Add the initial version of the OpenSpeedShop spack build file. OpenSpeedShop is an application performance analysis tool that runs on Linux and gathers a number of different types of performance data and displays that data in a command line tool (CLI) and via a graphical user interface (GUI).	2015-07-21 11:26:59 -05:00
Jim Galarowicz	e8235b10c6	Add the cbtf-lanl spack build package. cbtf-lanl is LANLs contribution to the CBTF project. It contains psTool and memTool which are example tools, showing use case examples for CBTF.	2015-07-21 11:23:23 -05:00
Jim Galarowicz	23971bae92	Add the cbtf-krell spack build package. cbtf-krell is the krell contribution to the CBTF project and includes services, messages, and core libraries and components that support performance information gathering, transfer, and reduction.	2015-07-21 11:20:27 -05:00
Jim Galarowicz	eff5016653	Add the cbtf spack build package. cbtf is the base package for the component based tool framework and is used for building and connecting cbtf components, including distributed components via the MRNet transfer mechanism.	2015-07-21 11:15:53 -05:00
Jim Galarowicz	a9c737f911	Add spack build package for Xerces-C which is a supporting package for the krell related projects.	2015-07-21 10:59:52 -05:00
Jim Galarowicz	f5093094eb	Add the cbtf-argonavis project package file. cbtf-argonavis is a project based on CBTF that supports performance analysis of GPU applications.	2015-07-21 10:58:16 -05:00
Jim Galarowicz	15ec3cb3cd	Add qt3 version support and a variant that controls patching the qt3 version for compile issues and answering yes to the license questions during build.	2015-07-21 10:51:53 -05:00
Jim Galarowicz	b4e0804b37	Add the latest version to the papi package.	2015-07-21 10:50:11 -05:00
Jim Galarowicz	64c8fd3fa1	Add krelloptions variant that is used to turn on a configuration option to build the thread safe lightweight libraries.	2015-07-21 10:49:15 -05:00
Jim Galarowicz	13421dc4aa	Add patches that enable features added for krell related products. Update the package file to add a krellpatch variant to control adding the patches.	2015-07-21 10:20:05 -05:00
Jim Galarowicz	0591980cbe	Add configuration change for krell related products, they expect the dyninst includes in include/dyninst.	2015-07-21 10:17:37 -05:00
Jim Galarowicz	d1f127d8ef	Add changes for krell related products to binutils. Add a patch that installs libiberty_pic.a which krell products will favor/use.	2015-07-21 10:15:17 -05:00
Todd Gamblin	e097696390	Update concretize to check for more changes and iterate further.	2015-07-16 01:12:11 -07:00
Todd Gamblin	8828dbf2e8	Remove superfluous print in vim.	2015-07-14 23:48:07 -07:00
Todd Gamblin	2e90599283	Merge branch 'develop' of github.com:scalability-llnl/spack into develop	2015-07-14 23:43:59 -07:00
Todd Gamblin	6f8a4318c5	Remove python 2.6-incompatible format expression.	2015-07-13 18:25:18 +00:00
Tom Scogland	889485181e	adding gnu global tags and exuberant ctags	2015-07-10 13:54:38 -07:00
Tom Scogland	fda208f6b8	adding YAPF (Yet Another Python Formatter)	2015-07-09 14:55:27 -07:00
Gregory L. Lee	2e37523428	for LaunchMON added latest git commit and dependences	2015-07-08 11:25:41 -07:00
Gregory L. Lee	ddfc276688	removed workaround	2015-07-02 15:14:30 -07:00
Florent Pruvost	e06d351f7a	add cblas headers in install directory	2015-07-02 02:05:00 -07:00
Todd Gamblin	7625881cb3	Merge pull request #75 from alfredo-gimenez/develop ... Thanks!	2015-07-02 01:27:47 -07:00
Todd Gamblin	6f94a2567b	Add py-lockfile and py-python-daemon packages.	2015-07-02 00:40:25 -07:00
Alfredo Gimenez	25c1678004	Commented out old version	2015-06-23 17:39:23 -07:00
Alfredo Gimenez	9f27ddc256	New mpfr release invalidates previous download link (not sure where old version is...)	2015-06-23 17:36:57 -07:00
Todd Gamblin	a51d4afe3e	Minor simplification (os.environ -> env)	2015-06-20 20:25:12 -07:00
Alfredo Gimenez	314ecc54fe	Thrift python support	2015-06-18 17:29:16 -07:00
Alfredo Gimenez	f832719ceb	Added silo 4.8 with HDF5 (for LULESH 2.0)	2015-06-18 12:31:01 -07:00
Alfredo Gimenez	0c028e24b4	Removed Lua dependency	2015-06-18 10:30:02 -07:00
Alfredo Gimenez	55e24548c3	Added Thrift (HBase management in C++)	2015-06-18 10:29:34 -07:00
Tom Scogland	912c29471a	adding python pyelftools package	2015-06-17 15:19:46 -07:00
Todd Gamblin	607f263fbc	Merge pull request #61 from alfredo-gimenez/develop ... Mitos 0.9.1	2015-06-11 16:31:28 -07:00
Todd Gamblin	3cb10f92af	Merge pull request #62 from trws/tmuxinator ... Partial ruby extension and tmuxinator package	2015-06-11 16:31:15 -07:00
Todd Gamblin	9955df896b	Merge pull request #63 from trws/silver-searcher ... adding package for the silver searcher	2015-06-11 16:31:04 -07:00
Tom Scogland	a087fd71e4	Removing comment line ... Missed that the auto-generated comment line stuck around.	2015-06-11 13:57:19 -07:00
Tom Scogland	d92ac2a6b2	Small ruby enhancement and tmuxinator package ... It is currently less painful to pull the source from github, compile it into a gem, then install the gem, than it is to download a gem and install it. This still lacks an activation mechanism, but `spack use tmuxinator` is functional.	2015-06-11 13:51:53 -07:00
Alfredo Gimenez	afe3c5b6bb	Mitos 0.9.1	2015-06-11 11:02:51 -07:00
Tom Scogland	cd581d1d5a	adding package for the silver searcher	2015-06-10 14:24:38 -07:00
Tom Scogland	2d465ffd10	partial upgrade to vim package	2015-06-10 14:14:31 -07:00
Todd Gamblin	04bcf43649	Merge pull request #58 from trws/python-cffi ... Python cffi	2015-06-10 00:36:37 -07:00
Todd Gamblin	874326a1ad	Merge pull request #56 from trws/uuid-task-and-taskd ... package files for libuuid, needed for flux and taskwarrior packages	2015-06-10 00:35:30 -07:00
Tom Scogland	c8ad456fd6	nettle depends on gmp, without it the nettle build fails on gcc 4.9.2	2015-06-09 19:37:42 -07:00
Tom Scogland	8839eeb421	new package files for python-cffi and its dependency pycparser	2015-06-09 19:36:08 -07:00
Tom Scogland	eab3d4811e	package files for libuuid, needed for flux and taskwarrior packages, along with the taskwarrior packages	2015-06-09 19:26:49 -07:00
Todd Gamblin	e64c0f4e4e	Fix Boost finding in Dyninst 8.2.1.	2015-06-09 17:48:38 -07:00
Todd Gamblin	bde9c7eee3	Upate ATLAS and netlib-blas.	2015-06-07 15:41:15 -07:00
Todd Gamblin	0570660d81	Make blas a virtual dependency, default netlib-blas.	2015-06-06 18:23:12 -07:00
Todd Gamblin	26b9592780	Add disablement of cpu throttle check.	2015-06-06 18:19:05 -07:00
Todd Gamblin	8b9dcfe635	Delete lapack/atlas combined package.	2015-06-06 18:18:51 -07:00
Todd Gamblin	5d94864b6c	Rename netlib_blas -> netlib-blas	2015-06-06 18:18:44 -07:00
Todd Gamblin	50d7b3df2b	Merge branch 'psaravan-fastmath' into features/fastmath ... Conflicts: var/spack/packages/lapack/package.py	2015-06-06 18:17:59 -07:00
Todd Gamblin	8215c85619	Merge branch 'develop' into features/fastmath	2015-06-06 18:15:52 -07:00
Todd Gamblin	c43b5d670b	Remove dummy fastmath package.	2015-06-06 17:48:33 -07:00
Todd Gamblin	b6ad37557f	fix up Saravan's petsc install	2015-06-06 17:41:15 -07:00
Todd Gamblin	d266bf0184	Working Hypre, PARPACK.	2015-06-06 17:21:11 -07:00
Todd Gamblin	5294e2b9b9	CGM package working on cab.	2015-06-06 16:56:59 -07:00
Todd Gamblin	c5ab3f4e82	CBLAS package working and patching in spack compilers.	2015-06-06 16:29:37 -07:00
Todd Gamblin	f29fc5822b	Working boxlib package.	2015-06-06 16:16:19 -07:00
Todd Gamblin	b9746de52e	Working ARPACK package.	2015-06-06 15:26:54 -07:00
Todd Gamblin	03780ea105	Remove autosave files from saravan's PR	2015-06-06 15:26:54 -07:00
Todd Gamblin	422a75e4b8	Clean up arpack build, use the Spack f77 compiler.	2015-06-06 15:26:54 -07:00
Saravan Pantham	1f0246f970	Updated HDF5 to use MPI.	2015-06-06 15:26:43 -07:00
Saravan Pantham	9d71093500	Updated Zoltan.	2015-06-06 15:26:42 -07:00
Saravan Pantham	fd34f4b119	Added more FASTMath packages.	2015-06-06 15:26:38 -07:00
Saravan Pantham	c174fe6199	Fixed BLAS and Lapack installations	2015-06-06 15:26:31 -07:00
Saravan Pantham	d461aa3722	Added Lapack package	2015-06-06 13:06:18 -07:00
Saravan Pantham	a23e1579e3	Added BLAS package	2015-06-06 13:06:17 -07:00
Todd Gamblin	ab31f989db	Merge Alfredo's Mitos changes from github with Greg's Python changes.	2015-06-06 12:53:28 -07:00
Gregory L. Lee	96ec75f7fe	Merge branch 'develop' of ssh://cz-stash.llnl.gov:7999/scale/spack into develop	2015-06-04 15:49:57 -07:00
Gregory L. Lee	5ac5c021b8	new package versions	2015-06-04 15:49:55 -07:00
Alfredo Gimenez	dae33a31c0	Dyninst 8.2.1+ dependency for cmake	2015-06-03 22:02:47 -07:00
Alfredo Gimenez	15aee0de1a	Mitos updated with new release	2015-06-03 21:58:44 -07:00
Gregory L. Lee	c4f5a881e6	new Python extensions	2015-06-03 10:08:07 -07:00
Gregory L. Lee	6dffe2ddd1	updated url	2015-06-03 10:07:21 -07:00
Gregory L. Lee	74b0a9c059	updated Python extension versions	2015-06-01 08:39:01 -07:00
Gregory L. Lee	83af842a74	fixed cython activation conflict	2015-06-01 08:38:32 -07:00
Todd Gamblin	f813d823a1	Merge branch 'features/optional-deps' into develop ... This includes: - Much better variant support (+debug/-debug) - Optional dependency support (depends_on(... , when='<condition>') - New config file format (YAML in ~/.spack) - New Spec format (YAML in $prefix/.spack/spec.yaml)	2015-05-18 16:16:20 -07:00
Matthew LeGendre	46b91ddf57	YAML config files for compilers and mirrors	2015-05-18 16:01:21 -07:00
Gregory L. Lee	50970b72d8	added py-pandas	2015-05-12 13:47:48 -07:00
Todd Gamblin	cd5fa128c5	Work on SPACK-41: Optional dependencies work for simple conditions. ... - Can depend conditionally based on variant, compiler, arch, deps, etc - normalize() is not iterative yet: no chaining depends_ons - really need a SAT solver, but iterative will at least handle simple cases. - Added "strict" option to Spec.satisfies() - strict checks that ALL of other's constraints are met (not just the ones self shares) - Consider splitting these out into two methods: could_satisfy() and satisfies() - didn't do this yet as it would require changing code that uses satisfies() - Changed semantics of __contains__ to use strict satisfaction (SPACK-56) - Added tests for optional dependencies. - The constrain() method on Specs, compilers, versions, etc. now returns whether the spec changed as a result of the call.	2015-05-12 09:56:59 -07:00
Todd Gamblin	ef9deeccd1	Merge branch 'features/yaml-spec' into features/optional-deps	2015-05-10 19:28:47 -07:00
Todd Gamblin	43e5465592	Fix bug in directory layout hidden files()	2015-05-10 17:56:27 -07:00
Todd Gamblin	3b1898b8e4	Fix SPACK-40: Finish adding variant directive. ... - Variants are now declarable in packages using the variant() directive. - Variants are checked - you can't just ask for a random variant, it has to be declared. - conditional logic (@when, if, '+debug' in spec, etc.) still required in package to implement variant.	2015-05-10 12:24:03 -07:00
Cyrus Harrison	8c4fe6d249	added simple spack package files for uncrustify and cppcheck	2015-04-30 22:42:53 -07:00
Alfredo Gimenez	0f5b26c9cd	MemAxes and Mitos	2015-04-09 14:46:33 -07:00
Todd Gamblin	37a5c3b09f	Version bump for adept-utils	2015-04-01 00:05:26 -07:00
Matthew LeGendre	89731d4a7d	Add binutils as a gcc dependency so it doesn't use the system linker/assembler.	2015-03-30 14:23:02 -07:00
Matthew LeGendre	50687e08cb	Fix QT with gcc 4.9 build error where QT's -Wl,--no-undefined interfered with gcc's implicit libgcc_s.so library	2015-03-27 17:32:37 -07:00
Todd Gamblin	c10773503b	Merge branch 'benjaminwalters-develop' into features/blas ... Conflicts: var/spack/packages/lapack/package.py	2015-03-26 00:31:34 -07:00
Todd Gamblin	fa53bb835c	Merge branch 'kev40293-develop' into features/blas	2015-03-26 00:12:41 -07:00
Benjamin Walters	1b75b34eb6	Removed subprocess.call calls and replaced with spack symlink calls	2015-03-19 04:37:21 -05:00
Benjamin Walters	3d2df174d1	Added package files for Lapack (has virtual dependency blas) and Netlib blas (provides virtual dependency blas).	2015-03-19 03:20:24 -05:00
Todd Gamblin	32244ac733	MPICH provides environment vars to make MPI compilers behave like spack.	2015-03-13 13:32:24 -07:00
Todd Gamblin	b80e091f46	metis package.	2015-03-13 00:03:33 -07:00
Todd Gamblin	32e2f21e8d	Working scotch package.	2015-03-12 08:49:45 -07:00
Todd Gamblin	81d518438c	Point ravel download at the github release page.	2015-03-12 06:54:15 -07:00
Todd Gamblin	b24aca6da2	Add -Wno-dev to avoid cmake policy warnings.	2015-03-12 06:54:15 -07:00
Todd Gamblin	e624ebec07	Working ravel package.	2015-03-12 06:54:15 -07:00
Todd Gamblin	14a79a2ddf	Add OTF package.	2015-03-12 06:54:14 -07:00
Todd Gamblin	d6c14f40b2	SAMRAI builds on cab with new URL.	2015-03-11 19:14:43 -07:00
Todd Gamblin	f8044e0290	SAMRAI URL update.	2015-03-11 18:58:29 -07:00
Todd Gamblin	fbebb94cd6	Add cram package.	2015-03-05 11:05:42 -08:00
Todd Gamblin	30e45df8a5	Updates to atlas packages.	2015-03-04 09:34:42 -08:00
Kevin Brandstatter	8921d52a82	Working lapack install linking to installed ATLAS	2015-03-03 22:27:16 -06:00
Kevin Brandstatter	0de021d427	Added LAPACK package file that depends on and builds against ATLAS	2015-03-03 19:21:02 -06:00
Kevin Brandstatter	08f37d478f	Removed FIXME comments from atlas	2015-03-01 21:26:37 -06:00
Kevin Brandstatter	2f2eab0e15	Merge branch 'develop' of github.com:kev40293/spack into develop	2015-02-26 14:42:12 -06:00
Kevin Brandstatter	bbfc519ee5	Added packaging files for ATLAS with and without netlib's LAPACK	2015-02-26 14:41:46 -06:00
Todd Gamblin	ffdb90f39a	Last minute Qt bugfix.	2015-02-24 10:42:35 -08:00
Todd Gamblin	daef78f538	Update packaging documentataion.	2015-02-23 10:31:22 -08:00
Saravan Pantham	14e70ad689	Added netcdf package support.	2015-02-18 18:05:57 -08:00
Todd Gamblin	c7b8a4e25c	Fix for SPACK-46: cleanup spack clean, spack restage.	2015-02-18 14:00:37 -08:00
Todd Gamblin	db11373351	Resurrect combined qt4/5 package from b7dacb	2015-02-18 13:16:22 -08:00
Gregory L. Lee	59198e29f9	Merge branch 'develop' of ssh://cz-stash.llnl.gov:7999/scale/spack into develop	2015-02-18 13:14:26 -08:00
Gregory L. Lee	6e13d0985c	fixed deps for python packages	2015-02-18 13:13:19 -08:00
Todd Gamblin	3e5aa4b0f5	llvm/clang version bump	2015-02-18 10:59:03 -08:00
Todd Gamblin	959ce4f985	Downgrade standard version of ImageMagick to a non-changing URL. ... - bleeding edge still available but commented by default.	2015-02-18 10:59:03 -08:00
Gregory L. Lee	44003449d5	fixed install steps for version 4	2015-02-17 16:26:00 -08:00
Todd Gamblin	17ac609d23	Merge branch 'features/memaxes' into develop ... Conflicts: var/spack/packages/libpng/package.py	2015-02-17 00:49:52 -08:00
Todd Gamblin	724b72bdaf	take out dyninst 8.2 for now. ... - doesn't build correctly with boost 1.55	2015-02-17 00:47:35 -08:00
Todd Gamblin	4af85441db	Merge branch 'features/python-modules' into develop	2015-02-17 00:44:02 -08:00
Todd Gamblin	57f331e2ac	Ignore conflicting nose tests in py-nose and py-matplotlib.	2015-02-17 00:22:18 -08:00
Todd Gamblin	67db8ddca8	Factor ignore logic into a predicate builder.	2015-02-17 00:21:15 -08:00
Todd Gamblin	06d6b0b205	More py-setuptools dependencies added.	2015-02-16 21:53:55 -08:00
Todd Gamblin	13376efafc	Add package-specific rpath back to shiboken and pyside.	2015-02-16 21:53:34 -08:00
Todd Gamblin	614c22fc1b	Allow forced deactivation -- best effort unlinking ... spack deactivate -f will unlink even if Spack thinks the package isn't enabled. Made deactivate routines idempotent.	2015-02-16 12:41:22 -08:00
Todd Gamblin	8aa3afcfde	Python package cleanup. ... - Added a number of dependencies to python packages. - Python packages may still not build without some OS support. - Example: Numpy needs ATLAS, and will use a system ATLAS install. - Atlas requires turning off CPU throttling to build. - can't do this as a regular user -- how to build ATLAS with Spack - currnetly relying on a system ATLAS install.	2015-02-15 23:04:20 -08:00
Todd Gamblin	847ed8ad39	Add libxslt, cleanup libxml2.	2015-02-15 23:04:04 -08:00
Todd Gamblin	b86eb69552	libgcrypt and libgpg-error packages.	2015-02-15 23:03:33 -08:00
Todd Gamblin	65d60f92f5	qhull package.	2015-02-15 23:02:51 -08:00
Todd Gamblin	36579844d9	Add Tcl/Tk packages.	2015-02-15 23:02:36 -08:00
Todd Gamblin	ce011501f9	Add R package.	2015-02-15 23:02:21 -08:00
Todd Gamblin	b11061f99d	Rename py-pyqt4 to py-pyqt.	2015-02-15 12:40:02 -08:00
Todd Gamblin	2f67cdaf10	Better time output on build completion.	2015-02-15 12:39:10 -08:00
Todd Gamblin	3c0048dd89	py-sip installs properly into a prefix	2015-02-15 01:59:36 -08:00
Todd Gamblin	c0c0879924	Better extension activation/deactivation	2015-02-15 01:58:35 -08:00
Todd Gamblin	0c94a6e2b0	Merge branch 'features/python-modules' into features/memaxes ... Conflicts: var/spack/packages/qt/package.py	2015-02-12 10:01:58 -08:00
Gregory L. Lee	5c2608b032	typo: Self -> self	2015-02-09 15:55:18 -08:00
Todd Gamblin	25af341954	Python package improvements.	2015-02-09 02:54:49 -08:00
Alfredo Gimenez	27617670f0	qt with hardware accelerated opengl working	2015-02-09 00:01:07 -08:00
Todd Gamblin	20ec80295d	setup_extension_environment is now setup_dependent_environment. ... - other packages, like Qt, can now use this to set up relevant build variables and env vars for their dependencies. - not just extensions anymore.	2015-02-08 19:41:17 -08:00
Todd Gamblin	e51e01f4f0	Cleaned up python to remove redundant line.	2015-02-08 19:39:36 -08:00
Alfredo Gimenez	9e878075ac	mesa 8.0.5 working	2015-02-08 16:09:13 -08:00
Alfredo Gimenez	cc684a3ebe	older mesa for 2.6 kernel (not workin yet)	2015-02-08 13:34:45 -08:00
Alfredo Gimenez	1605e04d44	mesa and systemd (systemd not working yet)	2015-02-07 22:08:50 -08:00
Alfredo Gimenez	932f3930f4	util-linux added	2015-02-07 09:18:34 -08:00
Alfredo Gimenez	676cc84c9e	more mesa dependencies	2015-02-06 17:24:55 -08:00
Alfredo Gimenez	5fdf5438ea	flex and bison	2015-02-06 16:55:48 -08:00
Alfredo Gimenez	d95d48bbe6	py-mako and fix for setup-env.sh	2015-02-06 16:43:21 -08:00
Gregory L. Lee	5cc369c2b8	add dependent packages to PYTHONPATH for build	2015-02-06 16:35:35 -08:00
Alfredo Gimenez	a4ac1977a4	merge with python-modules	2015-02-06 16:27:33 -08:00
Todd Gamblin	457f2d1d51	Fix libpng to use a better URL ... Sourceforge URLs like this eventually die when the libpng version is bumped: http://sourceforge.net/projects/libpng/files/libpng16/1.6.14/libpng-1.6.14.tar.gz/download But ones like this give you a "permanently moved", which curl -L will follow: http://download.sourceforge.net/libpng/libpng-1.6.16.tar.gz	2015-02-06 08:37:22 -08:00
Todd Gamblin	2d9190d264	Add extensions command.	2015-02-02 11:20:36 -08:00
Gregory L. Lee	48f1ff87f8	added more Python modules	2015-02-02 11:19:54 -08:00
Gregory L. Lee	2bc3f74df2	added more Python modules	2015-02-02 11:19:54 -08:00
Todd Gamblin	de91c95e8e	Ability to ignore files in activate/deactivate for extensions.	2015-02-02 11:19:54 -08:00
Todd Gamblin	ff9cb94f4f	Add arguements to extends() and activate/deactivate.	2015-02-02 11:19:54 -08:00
Gregory L. Lee	9fa489b7f2	added several modules	2015-02-02 11:19:54 -08:00
Gregory L. Lee	7992f415fe	added py-nose	2015-02-02 11:19:54 -08:00
Todd Gamblin	bcccf02020	Add setup_extension_environment() method. ... - lets packages do some setup before their extensions run install()	2015-02-02 11:19:53 -08:00
Todd Gamblin	9977543478	Added feature: package extensions ... - packages can be "extended" by others - allows extension to be symlinked into extendee's prefix. - used for python modules. - first module: py-setuptools	2015-02-02 11:19:00 -08:00
Todd Gamblin	2c1eda66c4	First python extension package: setuptools	2015-02-02 11:16:23 -08:00
Alfredo Gimenez	6a496ef620	PSAPI v0.6 -> Mitos v0.7	2015-01-23 16:58:15 -08:00
Todd Gamblin	0ac6ffb3ef	Add extra gcc dependencies. ... - not used until optional/conditional deps are implemented.	2015-01-23 00:05:23 -08:00
Todd Gamblin	3e37903ffd	Packages have rpath property.	2015-01-23 00:03:51 -08:00
Alfredo Gimenez	e97db785d6	psapi v0.6	2015-01-21 20:42:44 -08:00
Todd Gamblin	2a0e33876e	Add PSAPI	2015-01-19 20:45:27 -08:00
Todd Gamblin	d08c0703a0	Initial build of MemAxes GUI.	2015-01-19 14:07:41 -08:00
Todd Gamblin	b7dacb427d	Qt5 & VTK builds. VTK works with Qt 4 and 5.	2015-01-19 14:07:09 -08:00
Todd Gamblin	0211adbdb6	version bump libpng	2015-01-19 14:06:25 -08:00
Todd Gamblin	53c8b4249a	Make dbus put a machine id file in the right place.	2015-01-19 14:06:09 -08:00
Todd Gamblin	a4c19eee14	Qt5 webkit requires gperf	2015-01-19 14:00:54 -08:00
Todd Gamblin	4e3662f318	Dyninst 8.2 works.	2015-01-17 17:09:42 -08:00
Todd Gamblin	fa67d69585	Merge branch 'develop' of github.com:scalability-llnl/spack into develop	2015-01-13 00:53:04 -08:00
Todd Gamblin	917d82be0d	Add list_url for ompss	2015-01-13 00:45:12 -08:00
Luc Jaulmes	844c083848	Updated versions in OmpSs and Extrae, which resolves version-dependency problems with MPI	2015-01-12 20:38:32 +01:00
Todd Gamblin	36198c525b	Merge pull request #10 from justintoo/rose ... Add Packages for ROSE and JDK	2015-01-08 09:10:52 -08:00
Justin Too	3a07ec6c7d	(Package) Add ROSE compiler package	2015-01-07 14:07:35 -08:00
Justin Too	cd9e4b5b7f	(Package) Add Oracle JDK package	2015-01-07 14:07:02 -08:00
Todd Gamblin	9dabcc8703	Git package.	2014-12-26 00:07:15 -08:00
Todd Gamblin	b0ce1b81ba	Fix SPINDLE and SCR download URLs.	2014-12-25 18:42:03 -08:00
Todd Gamblin	0bc861db6e	Fix up bzip2 install	2014-12-25 17:55:19 -08:00
Todd Gamblin	d98e475361	Qt4 builds successfully with proper RPATHs.	2014-12-25 16:09:42 -08:00
Todd Gamblin	01ca61c7cc	Updates for Qt dependencies	2014-12-23 14:43:05 -08:00
Todd Gamblin	8edf299dd2	gnutls, nettle, wget, dbus	2014-12-23 14:43:05 -08:00
Todd Gamblin	e0b5890ab5	Initial versions of Qt and some dependencies.	2014-12-23 14:43:04 -08:00
Todd Gamblin	983f35f32a	Tweak extrae indentation.	2014-12-22 23:24:21 -08:00
Adam Moody	a9be5e7239	add gperftools (tcmalloc and friends)	2014-12-18 11:31:58 -08:00
Todd Gamblin	588955a987	Disable pkgconfig files until I support this better.	2014-12-05 08:45:51 -08:00
Todd Gamblin	7dc90c7097	Add experimental gasnet package for legion.	2014-12-04 10:53:52 -08:00
Todd Gamblin	c19347a055	Merge branch 'features/mpibash' into develop	2014-12-02 23:00:11 -08:00
Adam Moody	0f04f75fa3	add autoconf and libcircle dependencies, call autoconf before configure	2014-12-02 22:59:33 -08:00
Todd Gamblin	908400bfc5	Fix dyninst 8.1.1 checksum.	2014-12-02 21:57:37 -08:00
Todd Gamblin	0c12e26026	Bugfix in boost build. ... - b2 used to be called bjam	2014-12-02 14:25:52 -08:00
Todd Gamblin	79414947ae	Merge branch 'features/gcc' into develop ... Conflicts: lib/spack/spack/package.py	2014-11-08 22:30:46 -08:00
Todd Gamblin	57076f6ca4	URL parsing improvements	2014-11-08 11:42:54 -08:00
Todd Gamblin	9033ae6460	Add package for Sandia QThreads.	2014-11-07 00:20:39 -08:00
Todd Gamblin	d78ece658b	Change to faster gcc mirror that allows spidering.	2014-11-07 00:13:52 -08:00
Todd Gamblin	b97ee67a4b	Working GCC package.	2014-11-05 09:54:43 -08:00
Todd Gamblin	a37828bafb	Packages for gcc and its dependencies.	2014-11-04 13:42:47 -08:00
Todd Gamblin	488a6737b7	Merge branch 'features/python' into develop	2014-11-03 14:20:37 -08:00
Todd Gamblin	7905b50dcb	Bump ImageMagick version	2014-11-03 14:19:24 -08:00
Todd Gamblin	6c4bac2ed8	Update libmonitor URL to point to google code.	2014-11-03 14:17:10 -08:00
Todd Gamblin	6c8c41da98	Working Python 2.7.8, ncurses, readline	2014-11-03 14:12:16 -08:00
Todd Gamblin	1656f62a12	Add bzip2 package and spack pkg add command.	2014-11-03 14:12:16 -08:00
Todd Gamblin	8c8fc749be	Initial versions of python and libffi.	2014-11-03 14:12:06 -08:00
Todd Gamblin	132c32076a	Add Muster parallel clustering library.	2014-10-28 16:44:35 -07:00
Todd Gamblin	ee50a4ccce	Merge branch 'features/mpe2' into develop	2014-10-27 21:30:58 -07:00
Todd Gamblin	f918ea1ba7	Merge branch 'features/coreutils' into develop	2014-10-27 20:44:32 -07:00
Todd Gamblin	1c4948e1b0	Fix long-standing multimethod test error. ... - New inclusive version ranges from git-fetching branch enable a fix. - Can now write :1 to include 1.3, 1.4, etc. - couldn't do this before so provides() was weird.	2014-10-27 20:02:24 -07:00
Todd Gamblin	e2af2a27bf	Merge branch 'features/git-fetching' into develop ... Conflicts: lib/spack/docs/packaging_guide.rst lib/spack/spack/cmd/info.py lib/spack/spack/package.py lib/spack/spack/stage.py	2014-10-27 19:53:05 -07:00
Bob Robey	f9149b6cb6	Fixing errors in depends_on and updating version for ImageMagick	2014-10-25 21:59:01 -06:00
Bob Robey	76ed5c212c	Adding autotools and ImageMagick and patch for mpe2	2014-10-25 21:25:25 -06:00
Todd Gamblin	340b5590f1	Add coreutils package.	2014-10-25 14:41:06 -07:00
Todd Gamblin	ce1b30c229	Adding initial version of MPE2 package.	2014-10-23 21:08:13 -07:00
Todd Gamblin	c08985f7d1	Add bib2xhtml	2014-10-22 01:08:08 -07:00
Todd Gamblin	e4c2891d4b	Test for URL extrapolation.	2014-10-22 00:49:16 -07:00
Todd Gamblin	fb3003f664	Bug fixes for URLs and mirror fetching.	2014-10-16 06:56:00 -07:00
Todd Gamblin	1fcfb80bdd	SPACK-19 no longer an issue. Removing libtool copy.	2014-10-10 09:23:28 -07:00
David Boehme	8857b1f69e	Add Scalasca 2.1	2014-10-08 17:31:11 -07:00
Todd Gamblin	4c614ac768	Add SUNDIALS solver package.	2014-10-08 03:10:29 -07:00
Todd Gamblin	36a87f5bf9	Update documentation to add an auto-generated list of packages.	2014-10-08 03:08:40 -07:00
Todd Gamblin	4cae48c8df	Add libNBC (non-blocking collectives)	2014-10-06 13:48:50 -07:00
Todd Gamblin	616d232257	Add package for Torsten's netgauge tool.	2014-10-06 10:26:54 -07:00
Todd Gamblin	37e96ff6e1	Added test for Mercurial fetching.	2014-10-04 18:38:47 -07:00
Todd Gamblin	0fa1c5b0a5	Add Mercurial fetch strategy and lwm2.	2014-10-03 16:57:32 -07:00
Todd Gamblin	faae720c36	add tests for svn fetching.	2014-10-03 16:55:53 -07:00
Todd Gamblin	da84764e97	Add test case for git fetching.	2014-10-03 16:55:53 -07:00
Todd Gamblin	c74cd63389	Callpath build works when a tag is fetched from git.	2014-10-03 16:55:53 -07:00
Todd Gamblin	1b67c8493e	Merge branch 'features/automaded' into develop	2014-09-28 11:05:42 -07:00
Todd Gamblin	3bd52678be	MPICH sets MPI compilers to use real compilers and not spack wrappers.	2014-09-27 21:36:42 -07:00
Todd Gamblin	63292c5826	Update callpath to 1.0.2	2014-09-27 16:07:20 -07:00
Todd Gamblin	bff2192498	Added SWIG package.	2014-09-23 21:48:44 -07:00
Todd Gamblin	2de2d4bea7	Modify MPI installs to work without fortran.	2014-09-23 14:59:30 -07:00
Todd Gamblin	c9fbba22a2	First version of AutomaDeD package.	2014-09-19 09:55:31 -07:00
Todd Gamblin	fa5594e13f	Merge branch 'features/llvm' into develop ... - merging parts of LLVM that can be built now. - need to wait for standalone builds for some of the others.	2014-09-18 23:30:32 -07:00
Todd Gamblin	9165a000a3	Better C++11 support, remove non-standalone llvm-compiler-rt. ... - LLVM non-standalone add-ons are difficult to build outside LLVM. - May have to wait for future versions of LLVM to build some of these	2014-09-18 23:22:03 -07:00
Todd Gamblin	e46e1d51c2	Merge branch 'features/fileutils-deps' into develop	2014-09-18 21:39:41 -07:00
Todd Gamblin	4d2ccfa028	Take fileutils out and just merge the deps into develop.	2014-09-18 21:33:09 -07:00
Todd Gamblin	e85830e313	Fileutils successfully finds libarchive; can't find dtcmp despite config arg.	2014-09-18 01:49:30 -07:00
Adam Moody	250ffc28a3	update libcircle to download tarball from github/hpc	2014-09-17 23:40:16 -07:00
Todd Gamblin	607b4c8414	Merge branch 'features/scorep-packages' into develop	2014-09-17 13:38:33 -07:00
David Boehme	31bd1e069c	Add Score-P 1.3 release. Works for gcc, still some issues with Intel builds.	2014-09-17 12:28:33 -07:00
Adam Moody	6c94fc4fd2	added mpileaks (finally!)	2014-09-17 12:28:00 -07:00
Todd Gamblin	881fdb66ae	Merge branch 'develop' into features/fileutils ... Conflicts: lib/spack/spack/packages.py	2014-09-16 23:53:44 -07:00
Todd Gamblin	a4c8e945c7	Some fixups for Adam's callpath and adept-utils packages. ... - Make spack packages RPATH *ALL* dependencies (i.e. the whole tree) - prevents callpath link from finding wrong libelf -- always uses the one dyninst used.	2014-09-16 21:59:46 -07:00
Adam Moody	656cf12cda	add adeptutils and callpath packages	2014-09-16 16:50:54 -07:00
Todd Gamblin	ec44791aa3	Remove examples from default STAT build to avoid MPI dependence.	2014-09-05 10:52:43 -07:00
Todd Gamblin	eb5efed421	Merge branch 'features/postgresql' into develop ... - add spack cd command. - Fix bug in modules hook Conflicts: lib/spack/spack/cmd/stage.py lib/spack/spack/hooks/dotkit.py share/spack/setup-env.bash	2014-08-21 22:59:39 -07:00
Todd Gamblin	e301d62332	Remove development TAU version from package.	2014-08-20 11:46:59 -07:00
Todd Gamblin	fa3b19000d	update tau tarball	2014-08-11 22:47:24 -07:00
Todd Gamblin	6127b0baa6	new prototype TAU tarball from Kevin	2014-08-11 22:47:24 -07:00
Todd Gamblin	90cd0c7efa	Add Kevin's experimental TAU version	2014-08-11 22:47:24 -07:00
Todd Gamblin	0b68d1292d	Add package for openssl, have postgres use it. ... - Updated version wildcard to include [a-z]|alpha|beta to accommodate all the letter suffixes on openssl.	2014-08-11 22:47:23 -07:00
Todd Gamblin	0740c576a7	Package for postgresql.	2014-08-11 22:47:23 -07:00
Todd Gamblin	c55041e9d4	Partial commit of more packages.	2014-08-04 07:54:22 -07:00
David Beckingsale	8738a3a88c	Added LLVM package	2014-08-04 07:54:22 -07:00
Todd Gamblin	782e45e5b1	Fix up versions to match new version format, minor formatting.	2014-08-04 07:54:05 -07:00
Adam Moody	3779c78c00	adding libarchive	2014-08-04 07:54:05 -07:00
Adam Moody	a27e178ac2	add libcircle package	2014-08-04 07:54:05 -07:00
Adam Moody	712a2c3742	fileutils package	2014-08-04 07:54:04 -07:00
Adam Moody	6e7a7d127d	adding dtcmp package	2014-08-04 07:54:04 -07:00
Adam Moody	3dd8e561b9	add lwgrp package	2014-08-04 07:54:04 -07:00
Adam Moody	741084faf4	add mvapich2 package to handle different compilers and variants	2014-08-04 07:54:04 -07:00
Todd Gamblin	d7a3c7e555	Fix up Matt's openss packages.	2014-08-03 12:57:09 -07:00
David Boehme	557ae64d51	Fix cube compiler configuration	2014-08-01 16:40:57 -07:00
Matthew LeGendre	b7fbc77bab	Add sqlite to spack	2014-08-01 15:50:43 -07:00
Matthew LeGendre	d1de958daa	Add libmonitor to spack. Still needs svn support for checkout	2014-08-01 15:48:59 -07:00
David Boehme	513b5aecf1	Improve compiler configuration in otf2 package	2014-08-01 10:16:08 -07:00
Todd Gamblin	61e2cb56a4	Got version 1.2.1 building, but 1.3 and onwards are different.	2014-08-01 09:09:57 -07:00
David Boehme	e377abc18c	Add Score-P packages.	2014-07-31 17:51:23 -07:00
Todd Gamblin	e011b767fa	Converting Luc's packages to the new version format.	2014-07-31 14:09:38 -07:00
Luc Jaulmes	5f3bcbfded	Addind missing dependency nanos->extrae necessary for traces	2014-07-31 13:57:45 -07:00
Luc Jaulmes	853784d382	Added Paraver and dependencies, restricted Extrae to OpenMPI 1.6	2014-07-31 13:57:45 -07:00
Luc Jaulmes	5a4881c086	Adding Extrae and OmpSs with some of their dependencies, hwloc and PAPI. ... Extrae does not compile for latest versions of any MPI implementation.	2014-07-31 13:57:44 -07:00
Luc Jaulmes	5dffa26711	first try for ompss build script	2014-07-31 13:51:37 -07:00