Commit graph

17399 commits

Author SHA1 Message Date
Adam J. Stewart
759e8ee4c2
CUDA: update maintainers (#19262) 2020-10-11 21:11:17 -07:00
Toyohisa Kameyama
683ecb3f6e
mpifileutils: Add patch for aarch64. (#18724)
* mpifileutils: Add patch for aarch64.

* Update patch and limit version for apply patch.
2020-10-11 18:49:38 -05:00
Jean-Paul Pelteret
fe239c83fc
deal.II: Further modernisation and improvements (#19253) 2020-10-11 15:48:09 -04:00
Adam J. Stewart
cc136c27a9
Fix failing mpich build tests (#19259)
By default Spack uses the latest (highest version) GCC 
compiler available, which might change across updates
of the Github CI environment.

Since a C compiler is always installed and `mpich~fortran`
will result in faster build times, avoid building the FORTRAN
interface as part of the test.
2020-10-11 20:49:59 +02:00
Daniel Arndt
46cae921b9
Update datatransferkit (#19239)
Conflicts:
	var/spack/repos/builtin/packages/datatransferkit/package.py
	var/spack/repos/builtin/packages/xsdk/package.py
2020-10-11 13:27:54 -05:00
Roberto Di Remigio
7f46c11fda
Update XCFun with stable releases (#18784)
* Update XCFun with stable releases

* Fix lint
2020-10-10 21:14:15 -05:00
darmac
0ed8bbe765
Add new package: libgssglue (#18774) 2020-10-10 21:11:31 -05:00
darmac
be530949bb
Add new package: pinfo (#18806) 2020-10-10 21:11:03 -05:00
darmac
794f2c7510
Add new package: xdelta (#18827) 2020-10-10 21:09:55 -05:00
tcojean
a691e75af3
Ginkgo: new version and HIP support (#18842)
* Bump the Ginkgo version and add HIP support.

* Add the HIP variant to Ginkgo.

* Make HIP support work, check C++ compatibility.
2020-10-10 21:08:58 -05:00
Tom Payerle
793ffd8d9c
cpio: Fix issue compiling with newer intel compilers (#18854) (#18855)
* cpio: Fix issue compiling with newer intel compilers (#18854)

Do not add --no-gcc for recent intel compilers (e.g. 20.x)

* cpio: Remove --no-gcc flag for intel@19 as well as intel@20

Based on comments from @nrichart, removing --no-gcc option for intel@19
as well as intel@20
2020-10-10 21:07:04 -05:00
Toyohisa Kameyama
a408400619
audacious: add link type build to glib. (#18884) 2020-10-10 21:05:18 -05:00
Kelly (KT) Thompson
933aacf7b6
Provide draco-7_8_0. (#18947)
* Provide draco-7_8_0.

+ Also provide a patchfile for draco-7_6_0 to support CrayPE builds.
+ Version 7.8.0 has a new variant `+caliper`.
+ Sort dependencies alphabetically after grouping by required and optional.

* Remove patchfile that is no longer needed.

+ Newer versions of draco do not require this patch.
+ Older versions of draco are not supported for spectrum-mpi.

* Change new variant +caliper to default to False.
2020-10-10 21:02:00 -05:00
darmac
e8306e8f22
Add new package: less (#18952) 2020-10-10 21:00:54 -05:00
darmac
ec6f13aefa
Add new package: lsscsi (#18953) 2020-10-10 20:59:21 -05:00
darmac
6e4cf08984
Add new package: libnftnl (#18954) 2020-10-10 20:58:53 -05:00
darmac
edfac1a04f
Add new package: authd (#18955) 2020-10-10 20:58:29 -05:00
darmac
ff5d95da95
Add new package: backupninja (#18957) 2020-10-10 20:55:58 -05:00
darmac
3a59057f74
Add new package: universal-ctags (#18962) 2020-10-10 20:55:33 -05:00
darmac
28564620f6
Add new package: vtable-dumper (#18964) 2020-10-10 20:54:43 -05:00
Derek Ryan Strong
c9bee59bc3
pandoc: add variant for texlive (#18967)
* pandoc: add variant for texlive

Modifies the pandoc package by adding a variant for texlive, which is only needed for PDF output. Enables this variant by default.

* Fix whitespace
2020-10-10 20:53:51 -05:00
Toyohisa Kameyama
6383ef808d
poplpler: fix patch for 0.90.1. (#18969) 2020-10-10 20:53:05 -05:00
Sergey Kosukhin
5a49c2bcaf
parallel-netcdf: patch for PGI on Cray (#18972) 2020-10-10 20:50:25 -05:00
t-nojiri
b7ed6b4fe0
jellyfish@1.1.11: Change the type of the array dna_codes to the signed type. (#19019)
* jellyfish@1.1.11: Change the type of the array dna_codes to the signed type.

* jellyfish@1.1.11: Add patch file
2020-10-10 20:33:08 -05:00
Michael Kuhn
588cf7e03c
julea: Fix dependency typo and add new optional rocksdb dependency (#19045) 2020-10-10 20:28:56 -05:00
vvolkl
e37e66abd1
[dd4hep] update version v1.14.1 (#19056)
up
2020-10-10 20:26:44 -05:00
t-nojiri
1bd825674a
fl: Fix for aarch64 (#19089)
* fl: Fix for aarch64

* fl: Revise the points indicated by the review.
2020-10-10 20:25:36 -05:00
Tom Payerle
b3eb07cae0
superlu-mt: Add openmp flag to link command when using OpenMP (#19096)
Fix for #19095

When given +openmp, add the correct compiler openmp flag to the link
stage.  This seems to be required for %intel compilers.
I do this for all compilers, not just %intel, because it does not seem
to harm anything and might be beneficial for others (and just seems
'correct').
2020-10-10 20:24:08 -05:00
Pariksheet Nanda
9c5f0cab1d
meme: newer tarballs use a hyphen (#19222)
* meme: newer tarballs use a hyphen

* meme: remove trailing whitespace for flake8
2020-10-10 20:12:39 -05:00
Keita Iwabuchi
ea101daf81
Update Metall package to v0.4 and v0.5 (#19223)
* Metall: add version 0.2

* Add Metall v0.3

* Update Metall package to v0.4 and v0.5.
2020-10-10 20:11:40 -05:00
Dingwen Tao
03b9f0452c
Add cuSZ (#19228)
Co-authored-by: Dingwen Tao <tao@cs.ua.edu>
2020-10-10 20:10:55 -05:00
Melven Roehrig-Zoellner
ac91328c69
eigen: add a patch for 3.3.8 (#19229)
* eigen: add a patch for 3.3.8

* eigen: try to fix indenting
2020-10-10 20:09:21 -05:00
Hadrien G
528f86ddc4
[acts] Add version 1.1 (#19230) 2020-10-10 20:08:19 -05:00
Thomas Madlener
31772844d8
[whizard] Add compiler constraints and minimal ocaml version (#19231) 2020-10-10 20:07:43 -05:00
MichaelLaufer
ba04e8b890
parallel-netcdf: added burst buffer variant (#19237)
Co-authored-by: michael laufer <michael.laufer@toganetworks.com>
2020-10-10 19:56:51 -05:00
Andrew Gaspar
08a61006a5
Rust 1.47.0 (#19240) 2020-10-10 17:01:38 -05:00
h-denpo
cd800c20d3
asdcplib: Added PATH of openssl installed by spack to configure_args. (#19243) 2020-10-10 16:59:19 -05:00
Stan Tomov
160c00e3f7
Add MAGMA v2.5.4 release (#19245)
This release does not have conflict with CUDA 11.
2020-10-10 16:58:37 -05:00
darmac
3dd41548f6
Add new package: powertop (#18904) 2020-10-10 16:52:44 -05:00
Sajid Ali
9c56495503
py-scikit-image: bump version (#19153)
* py-scikit-image: bump version

* address reviewer comments

* address reviewer comments

* address reviewer comments

* py-scikit-image : update dependencies : part 2

* cloudpicke is a docs only dependency, enable it with a variant if necessary

* address reviewer comments

* cleanup build vs run deps

* address reviewer comments
2020-10-10 16:52:00 -05:00
Andrew Gaspar
ac7c3a1305
make py-pillow the default for pil (#19251)
py-pillow-simd is not portable to other architectures.
2020-10-10 12:55:07 -05:00
Jean-Paul Pelteret
69eb51dbfe
dealii: Reorganize package and add some new settings (#19137)
New variants:
- cxxstd
- examples
2020-10-10 09:20:53 -04:00
Geoff Womeldorff
35a9626ae9
Add package for FLCL (#19252)
* Initial cut at FLCL spackage. Works with GCC so far.

* Update spackage to list release which supports spack. Add @agaspar as a maintainer. Default unit tests to disabled when building with spack.

* Change url to 0.2.

* Nope, 0.3.
2020-10-09 17:37:17 -06:00
Danny Taller
012b4279b6
camp: new package (#19235) 2020-10-09 15:25:06 -07:00
Brian Van Essen
9a46ee0085
Fixed the dependency of newer OpenMPI on current hwloc. Pathch (#17917)
contributed by Thorsten Kurth.
2020-10-09 15:29:58 -05:00
谭九鼎
5e9f4dc982
Use https for links (#19244) 2020-10-09 11:24:09 -05:00
Andreas Baumbach
47e253f7fe
Add new package: bitsery (#19090) 2020-10-09 11:17:33 -05:00
Andreas Baumbach
830b30b8d5
Patch cereal (#19091)
Change-Id: I9fe2a1490c8c31a4174aca4ed2e270aa1efa1a50

Co-authored-by: Eric Müller <mueller@kip.uni-heidelberg.de>
2020-10-09 11:17:11 -05:00
Shahzeb Siddiqui
796561ed82
add package py-lmodule version 0.1.0 (#18856)
* add package py-lmodule version 0.1.0

Lmodule is tested with lmod >= 7.x. Lmod 6 has different json
structure in spider which is not supported by lmodule
2020-10-08 17:52:42 -05:00
Tom Payerle
47a7cd6a93
py-charm4py: new package (#18666)
* py-charm4py: new package

Charm++ for python

Installation notes:

1) charm4py ships with its own charm++ tarball.  It really wants
to use the version it ships with. It also builds charm++ in a special way to
produce libcharm.so (but not charmc, etc), so it does not seem
worthwhile to try to hack to build using a spack installed charmpp.

2) Originally, the installation was failing due to unresolved cuda
symbols when setup.py was doing a ctypes.CDLL of libcharm.so (in order
to verify version?).  This appears to be due to the fact that
libcharm.so had undefined cuda symbols, but did not show libcudart.so as
a dependency (in e.g. ldd output).  To fix this, I had to add
libcudart.so explicitly when linking libcharm.so, but since setup.py
untars a tarball to build libcharm, the solution was a tad convoluted:
2a) Add a patch in spack to py-charm4py which creates a patchfile
"spack-charm4py-setup.py.patch" which will modify a Makefile file (after it
is untarred) to add the flags in env var SPACK_CHARM4PY_EXTRALIBS to
the link command for libcharm.so
2b) The spack patch file also patches setup.py to run patch using the
aforementioned patchfile to patch the Makefile after it is untarred, and
sets the SPACK_CHARM4PY_EXTRALIBS variable appropriately in the setup
environment.

* Update var/spack/repos/builtin/packages/py-charm4py/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/py-charm4py/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* py-charm4py: flake8 fixes

remove useless import

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-10-08 16:29:47 -05:00