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jellyfish@1.1.11: Change the type of the array dna_codes to the signed type. (#19019)

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* jellyfish@1.1.11: Change the type of the array dna_codes to the signed type.

* jellyfish@1.1.11: Add patch file
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t-nojiri 2020-10-11 10:33:08 +09:00 committed by GitHub
parent 588cf7e03c
commit b7ed6b4fe0
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2 changed files with 24 additions and 0 deletions
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22
var/spack/repos/builtin/packages/jellyfish/dna_codes.patch Normal file
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@ -0,0 +1,22 @@
--- spack-src/jellyfish/dna_codes.hpp.bak 2013-05-30 04:45:57.000000000 +0900
+++ spack-src/jellyfish/dna_codes.hpp 2020-09-28 10:37:14.580832234 +0900
@@ -14,7 +14,7 @@
static const uint_t CODE_IGNORE = (uint_t)-2;
static const uint_t CODE_COMMENT = (uint_t)-3;
static const uint_t CODE_NOT_DNA = ((uint_t)1) << (bsizeof(uint_t) - 1);
-extern const char dna_codes[256];
+extern const signed char dna_codes[256];
};
#endif /* __DNA_CODE_HPP__ */
--- spack-src/jellyfish/dna_codes.cc.bak 2013-05-30 04:45:57.000000000 +0900
+++ spack-src/jellyfish/dna_codes.cc 2020-09-28 10:29:08.810848835 +0900
@@ -7,7 +7,7 @@
#define C 1
#define G 2
#define T 3
-const char jellyfish::dna_codes[256] = {
+const signed char jellyfish::dna_codes[256] = {
O, O, O, O, O, O, O, O, O, O, I, O, O, O, O, O,
O, O, O, O, O, O, O, O, O, O, O, O, O, O, O, O,
O, O, O, O, O, O, O, O, O, O, O, O, O, R, O, O,

2
var/spack/repos/builtin/packages/jellyfish/package.py
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@ -20,3 +20,5 @@ class Jellyfish(AutotoolsPackage):
depends_on('perl', type=('build', 'run'))
depends_on('python', type=('build', 'run'))
patch('dna_codes.patch', when='@1.1.11')