hlrs-software-stack/spack

Author	SHA1	Message	Date
Adam J. Stewart	3b4820f290	Patch pkg-config and update installs for various packages	2016-08-01 13:35:21 -05:00
Adam J. Stewart	9e05fdf4a1	Bug fixes	2016-08-01 13:35:20 -05:00
Adam J. Stewart	7e53f4328f	Add py-meep package and dependencies	2016-08-01 13:35:20 -05:00
George Hartzell	7d303afd64	Address flake8 issue	2016-08-01 13:42:55 -04:00
George Hartzell	1552ed943a	Add package for cask Add a package for cask, the emacs project/dependency management tool. Based on [Homebrew's formula][brew]. [brew]: https://github.com/Homebrew/homebrew-core/blob/master/Formula/cask.rb	2016-08-01 13:41:28 -04:00
George Hartzell	31b7580b76	Fix jdk package's use of distutils See issue #1364. @citibeth's fix works fine.	2016-08-01 13:33:27 -04:00
becker33	cc3fc2ba4c	Merge pull request #1322 from mdevlin1/feature/libxsmm Add libxsmm package	2016-08-01 09:56:09 -07:00
Paul Hopkins	cca240c8f9	Add concretize_preferences tests	2016-08-01 16:18:11 +01:00
alalazo	ec09dfe5d1	cp2k : added package	2016-08-01 10:41:33 +02:00
Todd Gamblin	fbbb82259a	Merge pull request #1407 from glennpj/r-ncdf4 New package - r-ncdf4	2016-07-31 22:15:52 -07:00
Todd Gamblin	ea11aab71f	Merge pull request #1406 from glennpj/r-np New package - r-np	2016-07-31 22:15:37 -07:00
Todd Gamblin	2042c94a6c	Merge pull request #1405 from glennpj/r-survey New package - r-survey	2016-07-31 22:15:09 -07:00
Todd Gamblin	64be8a80b2	Merge pull request #1404 from glennpj/r-tarifx New package - r-tarifx	2016-07-31 22:14:56 -07:00
Todd Gamblin	7185fe2876	Merge pull request #1403 from glennpj/r-e1071 New package - r-e1071	2016-07-31 22:14:40 -07:00
Todd Gamblin	0724eba935	Merge pull request #1402 from glennpj/r-plotrix New package - r-plotrix	2016-07-31 22:14:25 -07:00
Todd Gamblin	441bb83682	Merge pull request #1401 from glennpj/r-gdata New package - r-gdata	2016-07-31 22:13:50 -07:00
Todd Gamblin	2cffc90284	Merge pull request #1400 from glennpj/r-roxygen2 New package - r-roxygen2	2016-07-31 22:13:16 -07:00
Todd Gamblin	68cedd2599	Merge pull request #1399 from glennpj/r-testthat New package - r-testthat	2016-07-31 22:12:06 -07:00
Todd Gamblin	d00fd06095	Merge pull request #1398 from glennpj/r-xml New package - r-xml	2016-07-31 22:11:38 -07:00
Glenn Johnson	8815f0a0b5	New package - r-ncdf4 Interface to Unidata netCDF (version 4 or earlier) format data files.	2016-07-31 17:12:29 -05:00
Glenn Johnson	bfd03db12a	New package - r-np Nonparametric kernel smoothing methods for mixed data types.	2016-07-31 16:18:55 -05:00
Glenn Johnson	f14eb07dc1	New package - r-survey Analysis of complex survey samples.	2016-07-31 15:50:19 -05:00
Glenn Johnson	a9cc6a7d08	New package - r-tarifx A collection of various utility and convenience functions.	2016-07-31 15:39:09 -05:00
Glenn Johnson	be2f2e42db	New package - r-e1071 Misc functions of the Department of Statistics, Probability Theory Group (Formerly: E1071), TU Wien.	2016-07-31 15:26:13 -05:00
Glenn Johnson	05e5276aec	New package - r-plotrix Various plotting functions.	2016-07-31 15:15:55 -05:00
Glenn Johnson	dbf799bbf9	New package - r-gdata Data manipulation tools.	2016-07-31 15:07:40 -05:00
Glenn Johnson	f39e570f36	New package - r-roxygen2 In-source documentation for R.	2016-07-31 14:52:16 -05:00
Glenn Johnson	58a6039c0a	New package - r-testthat A unit testing system for R.	2016-07-31 14:40:46 -05:00
Glenn Johnson	0662b953f0	New package - r-xml Tools for parsing and generating XML within R and S-Plus.	2016-07-31 14:25:17 -05:00
Glenn Johnson	1b04b8be01	New package - r-datatable Extension of Data.frame	2016-07-31 14:11:04 -05:00
Todd Gamblin	173a16b38a	Merge pull request #1396 from glennpj/r-quantmod New package - r-quantmod	2016-07-30 20:15:53 -07:00
Todd Gamblin	68ba5377c1	Merge pull request #1395 from glennpj/r-ggmap New package - r-ggmap and dependencies	2016-07-30 20:14:57 -07:00
Todd Gamblin	253507c0c3	Merge pull request #1394 from glennpj/r-maps New package - r-maps	2016-07-30 20:14:27 -07:00
Todd Gamblin	7684652ce3	Merge pull request #1393 from glennpj/r-maptools New package - r-maptools	2016-07-30 20:14:19 -07:00
Todd Gamblin	b12dc34ba7	Merge pull request #1391 from glennpj/r-caret New package - r-caret	2016-07-30 20:14:09 -07:00
Todd Gamblin	9c31ee8a75	Merge pull request #1390 from glennpj/r-glmnet New package - r-glmnet	2016-07-30 20:13:50 -07:00
Todd Gamblin	ae5ba2b110	Merge pull request #1389 from glennpj/r-vcd New package - r-vcd	2016-07-30 20:13:05 -07:00
Todd Gamblin	13499f1655	Merge pull request #1388 from glennpj/r-multcomp New package - r-multcomp	2016-07-30 20:12:51 -07:00
Todd Gamblin	49e9f365d8	Merge pull request #1387 from glennpj/r-randomforest New package r-randomforest	2016-07-30 20:12:21 -07:00
Glenn Johnson	41cd861861	New package - r-quantmod Qualitative Financial modelling framework.	2016-07-30 18:25:43 -05:00
Glenn Johnson	2913aa8d09	New package - r-ggmap and dependencies Spatial visualization with ggplot2	2016-07-30 18:14:02 -05:00
Glenn Johnson	1bd2def41e	New package - r-maps Draw geographical maps.	2016-07-30 17:34:07 -05:00
Glenn Johnson	386f0e577a	New package - r-maptools Tools for reading and handling spatial objects.	2016-07-30 17:26:31 -05:00
Glenn Johnson	7207ce2a18	New package - r-caret Classification and Regression Training	2016-07-30 16:53:54 -05:00
Glenn Johnson	20e52e5052	New package - r-glmnet Lasso and Elastic-Net Regularized Generalized Linear Models	2016-07-30 16:38:00 -05:00
Glenn Johnson	e9944150a5	New package - r-vcd Visualizing Categorical Data	2016-07-30 16:28:43 -05:00
Glenn Johnson	fc1804974c	New package - r-multcomp Simultaneous Inference in General Parametric Models.	2016-07-30 16:09:57 -05:00
Glenn Johnson	12167e8f37	New package r-randomforest Breiman and Cutler's Random Forests for Classification and Regression.	2016-07-30 15:39:28 -05:00
Glenn Johnson	8dc26bbcd9	Have R extensions build in parallel. Set `MAKEFLAGS` so R extensions can be built in parallel if that is set in spack.	2016-07-30 15:20:14 -05:00
Glenn Johnson	ee7acc6b13	New package r-car Companion to Applied Regression.	2016-07-30 15:10:25 -05:00
Kelly (KT) Thompson	6c80b15220	GTK+3: Provide updates to package dependencies. WIP: I started trying to build gtkplus@3.20, but this package has many more dependencies than v2 and it requires newer versions of existing packages. This commit provides updates for 5 packages that are required by GTK+3. This is not the complete set of changes required for GTK+3. atk - move default version from 2.14 -> 2.20. glib - move default version from 2.42 -> 2.49 - v2.49 requires pcre+utf as a new dependency. pcre - if variant +utf is selected, add '--enable-unicode-properties' to the configure options. libepoxy - new package to spack - manages OpenGL function pointers. pango - move default version from 1.36 -> 1.40	2016-07-29 09:05:44 -06:00
Denis Davydov	aad5a4c4b3	mkl: flake8 fixes; minor docu update	2016-07-29 14:12:07 +02:00
Denis Davydov	b6ce0e6f0e	trilinos: make sure hdf5 is picked up from Spack	2016-07-29 13:11:12 +02:00
Denis Davydov	943896e237	trilinos: fix lapack lib dir	2016-07-29 13:09:34 +02:00
Denis Davydov	8ee4df8101	hypre: minor cleanup related to blas/lapack	2016-07-29 11:37:19 +02:00
Denis Davydov	572f1cd427	mkl: symlink libs to prefix.lib	2016-07-29 11:36:37 +02:00
Todd Gamblin	e04662f84f	Merge pull request #1344 from LLNL/bugfix/py-nose-nosetests do not ignore nosetests script in py-nose	2016-07-28 10:19:13 -07:00
becker33	5caaa2cd75	Merge pull request #1331 from adamjstewart/fixes/mvapich2 MVAPICH2 depends on libpciaccess	2016-07-28 09:52:51 -07:00
becker33	3759f62cba	Merge pull request #1235 from davydden/pkg/p4est_run_tests p4est: use run_tests instead of a variant	2016-07-27 18:36:36 -07:00
George Hartzell	f855cf6bab	Add package for tree Add a package for [tree](http://mama.indstate.edu/users/ice/tree/). It has a Makefile that hardcodes a prefix and some CFLAGS. Used filter_file to: - set the make variable prefix to `prefix`; and - comment out their CFLAGS, just use ours.... It installs, runs on CentOS7, and uninstalls cleanly.	2016-07-27 11:32:03 -04:00
Todd Gamblin	458deaae5e	Merge pull request #1350 from adamjstewart/fixes/openssl Fix OpenSSL url_for_version	2016-07-27 08:08:00 -07:00
Greg Lee	e4525e57bb	intel parallel studio itac fixes	2016-07-25 14:02:15 -07:00
Greg Lee	dba384108b	intel parallel studio setup mkl environment	2016-07-25 14:01:49 -07:00
Samuel Knight	a2d4dcc636	Added libhio package	2016-07-25 17:32:03 +00:00
becker33	969e785d94	Merge pull request #1352 from glennpj/r_googlevis New package - r-googlevis	2016-07-25 10:25:47 -07:00
becker33	5b7ec8de95	Merge pull request #1351 from glennpj/r_htmlwidgets New packages - R htmlwidgets	2016-07-25 10:25:19 -07:00
Glenn Johnson	eb865b0df2	Add py-setuptools as dependency With the addition of dependency types and with `py-setuptools` set as type='build' there are more packages that need to have `py-setuptools` added as a dependency. This PR adds that dependency for the following packages: - py-h5py - py-networkx - py-pytables - py-scikit-image	2016-07-25 11:23:09 -05:00
Glenn Johnson	81cd458c26	r-curl update and chaged remote archive This updates to the 1.0 version of r-curl. The remote archive directory name also changed so change that here as well.	2016-07-24 16:48:07 -05:00
Glenn Johnson	27986c9edf	New packages - R htmlwidgets	2016-07-24 16:43:35 -05:00
Glenn Johnson	b7bf88c761	New package - r-googlevis	2016-07-24 16:38:36 -05:00
Adam J. Stewart	29278090eb	Fix OpenSSL url_for_version	2016-07-24 15:19:27 -05:00
Glenn Johnson	a8855f48aa	Add dependency type tp r- packages This PR adds the `nolink` dependency type to r- package dependencies. This is needed due to the new dependency types in Spack. A couple of packages were updated with new versions as well.	2016-07-23 19:43:55 -05:00
Greg Lee	773bca159a	do not ignore nosetests script in py-nose	2016-07-22 15:49:36 -07:00
Glenn Johnson	ec9959b152	R extension dependencies with compiler wrapper This commit introduces a mechanism to insure that R package dependencies are built with the Spack compiler wrapper. A copy of Makeconf is made before `filter_compilers` is called. This is then pointed to by the R_MAKEVARS_SITE environment variable set up in `setup_dependent_environment`. With this the normal compilers are used outside of spack and the spack wrapper compilers are used inside of spack. This commit also standardizes on the `join_path` call. It also sets the commented build command to reflect what is actually used with the newer string formatting.	2016-07-22 17:05:01 -05:00
Adam J. Stewart	1be486c90a	Add CGNS package	2016-07-22 17:02:45 -05:00
Todd Gamblin	395c616a48	Merge pull request #950 from xjrc/packages/python Enhancement Proposal: Make Python Spack Installs Ignore User Configuration	2016-07-22 13:56:19 -07:00
Joseph Ciurej	fa92f58167	Adding temporary script that fixes all Python extensions w/ 'setup_py'.	2016-07-22 11:17:19 -07:00
Joseph Ciurej	ac2e0962ce	Improved the build flag construction code in the python install method.	2016-07-22 11:12:02 -07:00
Joseph Ciurej	fb2d2303d6	Fixed a bug that was causing Python installs to be affected by user config.	2016-07-22 11:11:08 -07:00
Todd Gamblin	f5b4664c7c	Merge pull request #1336 from glennpj/rcase Fix alpha case of dependencies for some r-packages	2016-07-22 10:08:14 -07:00
Todd Gamblin	adffba5081	Merge pull request #1230 from hartzell/update-jdk Add URL and md5 for jdk-8u92.	2016-07-21 22:06:29 -07:00
Glenn Johnson	e083c91d5e	Fix alpha case of dependencies. A while ago I was asked to convert packages to all lowercase. That was done but some dependencies did not get converted in the specification. This commit fixes that as well as a couple of urls that need to be made explicit and a missing dependency on jdk.	2016-07-21 19:58:04 -05:00
Todd Gamblin	ed737cb2a2	Merge pull request #1333 from LLNL/features/no-openssl-pinging Remove remote website pinging from OpenSSL	2016-07-21 16:46:59 -07:00
Todd Gamblin	488550c2e6	Merge pull request #1334 from hartzell/add-gcc-5.4.0 Update gcc package with info about gcc-5.4.0	2016-07-21 16:37:31 -07:00
Todd Gamblin	8523f75e6c	Remove remote website pinging from OpenSSL - OpenSSL no longer checks remote versions on the openssl site. - Spack is used on systems that aren't connected to the internet, and this check is probably in the wrong place and affects too many commands. We can work on figuring out a better, more configurable place to put a check like this.	2016-07-21 16:35:20 -07:00
George Hartzell	4efe022165	Update with info about gcc-5.4.0	2016-07-21 15:36:22 -04:00
Mitchell Devlin	796308ed85	edit	2016-07-21 13:39:27 -05:00
George Hartzell	4c105895ab	Fix flake8 violations	2016-07-21 14:24:51 -04:00
George Hartzell	9523e50732	Fix shebang line in tcl scripts Lmod's configure script goes to the trouble of finding tclsh. This change uses that info to rewrite the #! lines in the tcl scripts so that they call the tclsh that the configure script discovered. It needs to massage the existing shebang lines into something that the sed statement in the makefile can manipulate and it needs to add the path_to_tclsh info into the set of sed statements. Checked with versions 6.4.1 and 6.3.7 (the checksum for 6.0.1 is incorrect, a fix for another time).	2016-07-21 13:58:16 -04:00
George Hartzell	52f0249c61	tcl is actually a runtime dependency. lmod uses tclsh at runtime, so adjust the depends_on accordingly (thanks @davydden!).	2016-07-21 13:51:03 -04:00
George Hartzell	a27cb639d8	The lmod package should depend_on('tcl') The lmod package needs a tclsh. Up until now it just assumed that one was available on the system. This change adds a depends_on('tcl') to the lmod package. The tcl package installs a tclsh script with an embedded version number (e.g. tclsh8.6) but the lmod configuration looks for tclsh. This change extends the tcl package to symlink tclshX.Y to tclsh in the tcl package bin directory.	2016-07-21 13:51:03 -04:00
Adam J. Stewart	cf8f14780f	MVAPICH2 depends on libpciaccess	2016-07-21 11:13:17 -05:00
Glenn Johnson	ead1b93f75	MPI related changes - Redid the code for setting the itac symlink for the cluster edition. - Removed the *PATH variables for MPI to avoid a conflict with other MPI environment modules. - Added missing test for `+all` when checking variants.	2016-07-20 20:03:05 -05:00
Glenn Johnson	0be4c7dfbd	Changes as discussed in PR review - removed unneeded entry for `debugger/gdb/intel64_mic` - set `+mpi` directory name to impi	2016-07-20 20:03:05 -05:00
Glenn Johnson	5e5e36a659	Fix flake8 errors.	2016-07-20 19:54:35 -05:00
Glenn Johnson	16f67b5bb1	Setup environment for Intel Parallel Studio Set up the environment for the Intel compilers and tools. This commit does the following: - Unset variables that were incorrect from the auto guess prefix inspections. - Add a RemovePath environment_modifications_formats for dotkit. - Set the module environment variables appropriate for the different variants. - Change the component logic so that the '+all' variant works. It was getting split by letter and leaving COMPONENTS empty. - Added a variant checking function. - Added NONRPM_DB_DIR to the silent.cfg so that the product database goes to the installation directory. - With the product database in prefix the code to remove the product database file from the home directory is no longer needed and was removed. - Reformat the 'tools' variant description. There are probably more variables needed for the '+tools' for the 'professional' product version but I do not have access to that.	2016-07-20 19:54:35 -05:00
mwilliammyers	b8444aa518	Merge remote-tracking branch 'upstream/develop' into package-opencv * upstream/develop: (126 commits) Fix indent/flake8 error. openexr : Add new package Set environment variables Added gnu packages datamash, parallel, and screen added package as argument to setup_platform_environment ilmbase : Add new IlmBase package Documented linker default fixed flake errors removed commented-out code Set default link type to dynamic on cray. Includes hooks for platform-based environment changes fixed flake errors fixed flake errors Improved cray_xc detection bug fix Improved cray_xc detection remove FIXMEs Ensure that per-4.4.1 NetCDF doesn't use HDF5 1.10 Re-ignore licenses directory Add "default" configuration scope. Draft CDO Make frontend OS on Cray machines a proper linux distro. ...	2016-07-20 18:34:53 -06:00
mwilliammyers	a09bebcaea	opencv : Add section comments	2016-07-20 18:19:59 -06:00
mwilliammyers	a9541997ae	opencv : Reorder depends_on statements	2016-07-20 18:19:03 -06:00
mwilliammyers	bd02892f7b	opencv : Use dso_suffix for python lib	2016-07-20 18:10:10 -06:00
mwilliammyers	ea9fa81ba5	opencv : Fix python include dir for cmake	2016-07-20 18:10:09 -06:00
mwilliammyers	670157b364	opencv : Add zlib cmake support	2016-07-20 18:10:09 -06:00
mwilliammyers	e5ae48a9da	opencv : Add jasper cmake support	2016-07-20 18:10:09 -06:00
mwilliammyers	47514d07b1	opencv : Use dso_suffix	2016-07-20 18:10:08 -06:00
mwilliammyers	f2e8f27c15	opencv : Add libpng cmake support	2016-07-20 18:10:08 -06:00
mwilliammyers	fc79b104f0	opencv : Add libjpeg-turbo cmake support	2016-07-20 18:10:07 -06:00
mwilliammyers	97143768c8	opencv : Add libtiff cmake support	2016-07-20 18:10:07 -06:00
mwilliammyers	d3b97227a1	opencv : Add optional jdk dependency	2016-07-20 18:10:07 -06:00
mwilliammyers	da2b695f93	opencv : Fix lib finding for python	2016-07-20 17:25:05 -06:00
mwilliammyers	10c285a774	opencv : Use string.format()	2016-07-20 17:25:01 -06:00
mwilliammyers	0654ee6a10	opencv : Fix style inconsistencies	2016-07-20 17:24:55 -06:00
mwilliammyers	8cf03c209f	opencv : Make extending python optional	2016-07-20 17:24:50 -06:00
mwilliammyers	c588ce9648	opencv : Improve cmake detecting python	2016-07-20 17:24:46 -06:00
mwilliammyers	3fac2dcc41	opencv : Fix cmake not disabling gtk	2016-07-20 17:24:40 -06:00
mwilliammyers	0080ffcf9f	opencv : Use `in` operator	2016-07-20 17:24:35 -06:00
mwilliammyers	ce902bf27a	opencv : Minor style changes	2016-07-20 17:24:30 -06:00
mwilliammyers	2cde6aaabd	opencv : Add GUI support	2016-07-20 17:24:26 -06:00
mwilliammyers	578ddea418	opencv : Fix pep8 style issues	2016-07-20 17:24:21 -06:00
mwilliammyers	cf0f5756f5	opencv : Fix python extensions issues	2016-07-20 17:24:13 -06:00
mwilliammyers	9e1d26e973	opencv : Add CUDA extensions	2016-07-20 17:23:46 -06:00
Todd Gamblin	e389afedaa	Merge pull request #1323 from glennpj/rlib Set environment variables for R	2016-07-20 15:43:26 -07:00
Todd Gamblin	b9c79824a2	Merge pull request #1313 from sknigh/gnu-tools Added packages for GNU tools screen, datamash, and parallel	2016-07-20 15:38:55 -07:00
Todd Gamblin	0777d3a5ba	Merge pull request #1326 from mwilliammyers/package-openexr openexr : Add new package	2016-07-20 15:35:36 -07:00
Mitchell Devlin	2344ffd0c7	add libxsmm package	2016-07-20 16:36:31 -05:00
Glenn Johnson	0c75174ec3	Fix indent/flake8 error.	2016-07-20 15:56:20 -05:00
mwilliammyers	e973adf84b	openexr : Add new package	2016-07-20 14:49:03 -06:00
Glenn Johnson	f9137f606f	Set environment variables This commit adds `setup_environment` to export the libraries and headers. Fixes #1314.	2016-07-20 15:37:31 -05:00
Todd Gamblin	d8acd41ba1	Merge pull request #1321 from mwilliammyers/package-ilmbase ilmbase : Add new IlmBase package	2016-07-20 13:13:21 -07:00
Todd Gamblin	8efbec3c0b	Merge pull request #1292 from eschnett/eschnett/hdf5-default-1.10 Make newest HDF5 release the default version	2016-07-20 12:57:45 -07:00
Todd Gamblin	4c7c9f4ff5	Merge pull request #1303 from adamjstewart/features/armadillo Updates to Armadillo package	2016-07-20 12:56:41 -07:00
Samuel Knight	24c14ff7a8	Added gnu packages datamash, parallel, and screen	2016-07-20 19:53:14 +00:00
mwilliammyers	c9f4e8ce5a	ilmbase : Add new IlmBase package	2016-07-20 13:13:47 -06:00
alalazo	40cb314638	Merge branch 'develop' of https://github.com/LLNL/spack into features/install_with_phases Conflicts: lib/spack/spack/package.py	2016-07-20 21:02:19 +02:00
Todd Gamblin	4434f482c0	remove FIXMEs	2016-07-20 09:48:54 -07:00
Todd Gamblin	3def8ef60e	Merge branch 'cdo' of https://github.com/robertdfrench/spack into robertdfrench-cdo	2016-07-20 09:48:01 -07:00
Todd Gamblin	20584ab084	Merge pull request #1302 from robertdfrench/adios-url Get adios from github, not NCCS	2016-07-20 09:47:23 -07:00
Todd Gamblin	7c28338d60	Merge pull request #1301 from robertdfrench/silver-searcher Silver Searcher 0.32 is out	2016-07-20 09:47:12 -07:00
Todd Gamblin	17a63c9646	Merge pull request #1284 from eschnett/eschnett/py-h5py.2 Declare dependency of "py-h5py +mpi" on "py-mpi4py"	2016-07-20 09:45:54 -07:00
Todd Gamblin	7f20678969	Merge pull request #1291 from eschnett/eschnett/netcdf-4.4.1 Update NetCDF to version 4.4.1	2016-07-20 09:34:14 -07:00
Erik Schnetter	69e36c9821	Ensure that per-4.4.1 NetCDF doesn't use HDF5 1.10	2016-07-20 11:25:46 -04:00
Robert D. French	6b0fb476ab	Draft CDO	2016-07-19 15:57:55 -07:00
Robert D. French	1c9cf668a1	Silver Search 0.32 is out PEP8 Love + Re-adding v0.30.0	2016-07-19 10:48:53 -07:00
Adam J. Stewart	8034536054	Fix shared object suffix for macOS	2016-07-19 12:37:34 -05:00
Adam J. Stewart	afa4cdc2d8	Updates to Armadillo package	2016-07-19 12:33:04 -05:00
Robert D. French	25e765baae	Download Adios from Github Get adios from github, not NCCS Use correct hash, thanks Ben	2016-07-19 10:31:59 -07:00
Todd Gamblin	a64a2e72cf	Merge pull request #1226 from adamjstewart/features/tkinter Add Tkinter support for Python	2016-07-19 09:41:12 -07:00
Todd Gamblin	4ad29b6c9b	Merge pull request #1262 from davydden/pkg/suite_sparse_fix_blas suite-sparse: enable TBB and fix Blas/Lapack libs	2016-07-19 09:18:42 -07:00
Erik Schnetter	71684cb071	Flex requires m4	2016-07-18 23:04:20 -04:00
Erik Schnetter	4dec06e4f4	Make HDF5 1.10 the default version Apply this only after NetCDF 4.4.1 is supported.	2016-07-18 20:14:44 -04:00
Erik Schnetter	94df1b801a	Update NetCDF to version 4.4.1 This version supports HDF5 1.10 in a backward-compatible manner.	2016-07-18 20:11:32 -04:00
Todd Gamblin	7555c3d949	Merge pull request #1204 from goxberry/cmake-3.6.0 cmake@3.6.0	2016-07-18 16:53:17 -07:00
Todd Gamblin	25a9181a1b	Merge pull request #1287 from mwilliammyers/package-jasper jasper: Add new jasper package	2016-07-18 15:43:18 -07:00
mwilliammyers	02340062b4	package - jasper - Add new jasper package	2016-07-18 16:17:07 -06:00
Todd Gamblin	607813d5ce	setuptools is a build dependency in numpy.	2016-07-18 14:13:14 -07:00
Erik Schnetter	67fade5b1e	Declare dependency of "py-h5py +mpi" on "py-mpi4py"	2016-07-18 17:08:56 -04:00
Todd Gamblin	a9ed2296a1	Merge pull request #1282 from eschnett/eschnett/py-numpy py-numpy: Add py-setuptools dependencies	2016-07-18 13:58:17 -07:00
Todd Gamblin	fa0bbb57ea	Merge pull request #1270 from davydden/pkg/mumps_scalapack_fix_blas Pkg/mumps scalapack fix blas	2016-07-18 13:57:26 -07:00
Erik Schnetter	49cd6f6269	py-numpy: Add py-setuptools dependencies Closes #1281.	2016-07-18 16:01:48 -04:00
Todd Gamblin	089189afaf	Merge pull request #1238 from davydden/pkg/mkl_update mkl: add provide blas/lapack	2016-07-18 11:52:30 -07:00
Adam J. Stewart	ea425a101a	Flake8 and new tk version	2016-07-18 07:51:08 -05:00
Adam J. Stewart	583232ea52	Build Python with Tkinter support	2016-07-18 07:51:08 -05:00
Todd Gamblin	b3789a4693	Merge pull request #1269 from davydden/pkg/hypre_trilinos_blas Pkg/hypre trilinos blas	2016-07-18 03:06:37 -07:00
Denis Davydov	2e4966c854	netlib-scalapack: use dso_suffix	2016-07-18 10:11:18 +02:00
alalazo	6c00a13ed5	Merge branch 'develop' of https://github.com/LLNL/spack into features/install_with_phases Conflicts: var/spack/repos/builtin/packages/swiftsim/package.py	2016-07-18 08:49:24 +02:00
Todd Gamblin	c898b9db04	Merge pull request #1188 from epfl-scitas/packages/py-numpy RPATH for blas in py numpy	2016-07-17 21:20:39 -07:00
Todd Gamblin	28ce08b9e2	Merge pull request #1258 from eschnett/eschnett/openmpi-2.0.0 Update to OpenMPI 2.0.0	2016-07-17 21:01:21 -07:00
Denis Davydov	1bd3a702c9	mumps: flake8 fixes	2016-07-16 15:14:06 +02:00
Denis Davydov	561748a063	netlib-scalapack: flake8 fixes	2016-07-16 08:03:54 +02:00
Denis Davydov	9ea4f80f15	flake8 fixes	2016-07-16 07:58:51 +02:00
Denis Davydov	0752eccfa5	mumps: don't hardcode blas name; remove unused depends_on(lapack)	2016-07-16 07:38:42 +02:00
Denis Davydov	6175ce7559	netlib-scalapack: make sure Spack's Lapack is used	2016-07-16 07:37:38 +02:00
Denis Davydov	987fb137f9	trilinos: don't hardcode blas/lapack names	2016-07-16 07:31:38 +02:00
Denis Davydov	514c61b8fe	hypre: don't hardcode blas/lapack/mpi; optionally run tests	2016-07-16 07:28:31 +02:00
Denis Davydov	96e9dbca08	suite-sparse: enable TBB and fix Blas/Lapack libs	2016-07-16 00:33:39 +02:00
Erik Schnetter	5a1ed51dcd	Correct indentation	2016-07-15 18:10:33 -04:00
becker33	c0be585b67	Merge pull request #1168 from epfl-scitas/packages/gts gts : added package	2016-07-15 14:07:59 -07:00
becker33	656b2d562f	Merge pull request #1177 from epfl-scitas/packages/swiftsim_and_metis swiftsim : fixed configuration for metis	2016-07-15 14:05:28 -07:00
becker33	f761130343	Merge pull request #1187 from paulhopkins/bugfix/python-updates Bugfix/python updates	2016-07-15 14:04:46 -07:00
becker33	f1d85ac2e9	Merge pull request #1227 from glennpj/ggvis New package - r-ggvis	2016-07-15 14:00:15 -07:00
becker33	37ce4108ce	Merge pull request #1254 from mdevlin1/features/hmmer add HMMER package	2016-07-15 13:52:56 -07:00
Erik Schnetter	4663288b49	Update to OpenMPI 2.0.0	2016-07-15 13:00:48 -04:00
George Hartzell	64b1bafd41	Make flake8 happy with .../jdk/package.py My PR for adding a new jdk version failed its travis run because of existing flake8 violoations. This package cleans them up. I'm not particularly pythonic, but most of the complaints were obvious. HOWEVER, I'm not particularly confident about handling long lines by taking an flake8 exception comment onto the end. Feedback welcome...	2016-07-15 12:39:40 -04:00
Mitchell Devlin	5f1b6f000d	add HMMER package	2016-07-15 11:03:57 -05:00
Denis Davydov	b29b7595dd	mkl: add info on interface and threading layers to the docstring	2016-07-15 17:35:10 +02:00
alalazo	893a5565fe	Merge branch 'develop' of https://github.com/LLNL/spack into features/install_with_phases Conflicts: lib/spack/spack/__init__.py var/spack/repos/builtin/packages/gmp/package.py var/spack/repos/builtin/packages/openjpeg/package.py	2016-07-15 11:02:55 +02:00
Todd Gamblin	077848fc0b	Merge pull request #378 from mathstuf/dep-types dependency types	2016-07-15 00:29:16 -07:00
Todd Gamblin	f3e9588457	Fix package name bug.	2016-07-14 23:15:54 -07:00
Gregory Becker	487ec2aff1	added py-pydatalog package	2016-07-14 23:12:35 -07:00
Todd Gamblin	b8e2799700	Add GNU Prolog package.	2016-07-14 14:38:30 -07:00
Ben Boeckel	a0584c78a8	foam-extend, sundials: add cmake as a builddep The sundials doesn't use CMake directly, but it is referenced in the patch step. I suspect it calls CMake somewhere else in its build system.	2016-07-14 16:21:47 -04:00
Ben Boeckel	d71a12438b	cantera: use nolink for python module dependencies Unsure about this, but this is probably true.	2016-07-14 16:21:47 -04:00
Ben Boeckel	39aef5fc00	lua: bring in run deps of build and run deps	2016-07-14 16:21:47 -04:00
Ben Boeckel	a82385cdae	R: look only at run dependencies of build and run deps	2016-07-14 16:21:46 -04:00
Ben Boeckel	0ca1a481a3	python: setup the dependent environment properly We want the run dependencies of all build and run dependencies of the current package.	2016-07-14 16:21:46 -04:00
Ben Boeckel	ac1701ae29	msgpack-c: add missing dependency on cmake	2016-07-14 16:21:46 -04:00
Ben Boeckel	77965ce5bf	py-matplotlib: require py-setuptools to build	2016-07-14 16:21:46 -04:00
Ben Boeckel	6fd45520da	deptypes: mark deptypes in packages	2016-07-14 16:21:46 -04:00
Ben Boeckel	45c675fe7f	spack: introduce dependency types deptypes: allow for different queries For things like Python modules, they are required for the build and runtime, but rather than adding a new parameter for what to query across the dependency DAG, just expose the recursive query parameter.	2016-07-14 16:21:46 -04:00
Ben Boeckel	bdf82246f7	darwin: explicitly use the 'when=' kwarg	2016-07-14 16:21:45 -04:00
Ben Boeckel	1ae43b3405	doxygen: add missing import	2016-07-14 16:21:45 -04:00
Denis Davydov	668b4f1b2c	mkl: set MKLROOT	2016-07-13 23:36:23 +02:00
Adam J. Stewart	3864da6300	Flake8	2016-07-13 11:45:16 -05:00
Adam J. Stewart	d09b0c95ec	Filter both makefiles to allow intel to build bzip2	2016-07-13 11:45:16 -05:00
alalazo	7cedd620f1	package.py : added CMakePackage, changed qhull, ibmisc, openjpeg to work as examples	2016-07-13 17:36:06 +02:00
Denis Davydov	de9cce3e80	p4est: flake8	2016-07-13 11:45:33 +02:00
Denis Davydov	52ca215e29	mkl: add provide blas/lapack	2016-07-13 11:42:40 +02:00
Denis Davydov	b8bd02c5b2	p4est: use run_tests instead of a variant	2016-07-13 10:56:40 +02:00
alalazo	5cc59507f7	package.py : hdf5 and lzo have examples of run_tests	2016-07-13 09:27:09 +02:00
alalazo	97c2224cd6	package.py : extra arguments, fixed inheritance issue - added attribute to hold extra arguments in PackageBase instances - fixed registration from within packages - examples : hdf5, lzo	2016-07-13 09:27:09 +02:00
alalazo	a43c63f149	package : added EditableMakefile Modifications : - added EditableMakefile to PackageBase subclasses - astyle modified as an example - preliminary hook to stop at a certain phase of install	2016-07-13 09:27:09 +02:00
alalazo	8f75d34331	package : added a stub for AutotoolsPackage, examples in szip and swiftsim	2016-07-13 09:27:09 +02:00
alalazo	8ed028e2d6	package : introduced InstallPhase, added decorators for prerequisites and sanity_checks of phases	2016-07-13 09:27:09 +02:00
George Hartzell	a73d91a2e5	Add URL and md5 for jdk-8u92. Installed on Centos7.2 system, `java -version` works.	2016-07-12 16:59:08 -04:00
Glenn Johnson	955d02049c	New package - r-ggvis Bring in ggvis and dependencies. GGvis is an implementaion of the 'Grammar of Graphics', combined with shiny.	2016-07-12 12:27:54 -05:00
Todd Gamblin	069de3f008	Merge pull request #1223 from glennpj/tidyr New package - r-tidyr	2016-07-12 00:23:09 -07:00
Todd Gamblin	04b3d8d86f	Merge pull request #1222 from glennpj/libxml2 Use the site_packages_dir from the Python class	2016-07-12 00:22:45 -07:00
Glenn Johnson	502d15fd3b	New package - r-tidyr Tools for changing the layout of data sets.	2016-07-11 21:12:28 -05:00
Glenn Johnson	5e323b052a	Remove import of os The import of `os` is no longer needed.	2016-07-11 20:21:25 -05:00
Glenn Johnson	81daaddfe9	Use the site_packages_dir from the Python class It is not necessary to set site_packages_dir in this package as it is already provided by the Python package class.	2016-07-11 20:08:30 -05:00
Todd Gamblin	15790d7018	Merge pull request #1207 from davydden/pkg/dealii_update_petsc37 dealii: update for petsc37	2016-07-11 15:32:32 -07:00
Glenn Johnson	1b08296392	Fix flake8 error	2016-07-11 17:22:31 -05:00
Glenn Johnson	8de84b5d8a	Fix error reported on Google Groups list Fixes the reported `TypeError: not enough arguments for format string` error.	2016-07-11 16:56:26 -05:00
Todd Gamblin	efdcd199c1	Merge pull request #1218 from glennpj/dplyr New package - r-dplyr	2016-07-11 13:19:09 -07:00
Glenn Johnson	d99fbbb68f	New package - r-lubridate Functions to work with date-times and timespans.	2016-07-11 14:59:47 -05:00
Glenn Johnson	11960e53ef	New package - r-dplyr This brings in dplyr and dependencies.	2016-07-11 14:50:33 -05:00
Todd Gamblin	255d05a9c1	Merge pull request #1214 from glennpj/rfilter Filter compilers for R	2016-07-11 11:37:39 -07:00
Glenn Johnson	664bdd359f	Filter compilers for R This adds a filter_compilers function to have the Makeconf file for R point to the actual compilers rather than the spack wrappers. Also added version 3.3.1.	2016-07-11 13:29:43 -05:00
Todd Gamblin	691e628726	Merge pull request #1206 from davydden/pkg/slepc_371_fix slepc: fix install_name for binaries on macOS for 3.7.1	2016-07-11 09:14:53 -07:00
Paul Hopkins	0d3a52ae29	Fix typo in Octave variant suitesparse	2016-07-11 16:00:19 +01:00
Denis Davydov	1b553f2b21	dealii: fix directory structure	2016-07-11 13:21:16 +02:00
Denis Davydov	f14cd67446	dealii: flake8 fixes	2016-07-11 10:56:57 +02:00
Denis Davydov	84afaf385f	dealii: run tests only when self.run_tests=true	2016-07-11 10:22:29 +02:00
Denis Davydov	1cc6e42682	dealii: add petsc/slepc 3.7 support	2016-07-11 10:20:15 +02:00
Denis Davydov	38550bbc1b	slepc: fix install_name for binaries on macOS for 3.7.1	2016-07-11 10:17:09 +02:00
Geoffrey Oxberry	7551e4c14f	cmake@3.6.0 Add CMake version 3.6.0.	2016-07-10 18:02:51 -07:00
Todd Gamblin	b0f4052bd8	Merge pull request #1169 from davydden/feature/install_argument_tests_petsc_fixes --run-tests install argument and petsc fixes	2016-07-09 12:10:16 -07:00
Denis Davydov	e482994a15	petsc: add -lm when building example	2016-07-09 08:12:34 +02:00
Erik Schnetter	c8137194f0	Update Cereal to 1.2.0	2016-07-08 15:20:09 -04:00
Todd Gamblin	f04258eb29	Merge pull request #1192 from SteVwonder/develop docbook-xml: replace 'cp -t' with install_tree	2016-07-08 11:09:41 -07:00
Todd Gamblin	1fa67e458c	Merge pull request #1194 from SteVwonder/lua-fix lua: switch self.version[:2] to .up_to(2)	2016-07-08 11:09:18 -07:00
Stephen Herbein	bb8a8ecda3	json-c: fix build by running serially	2016-07-08 10:39:47 -07:00
Paul Hopkins	49e8e4b590	Add comments explaining UCS4 and prevent variant being used on Python 3.3 and above	2016-07-08 13:47:25 +01:00
Stephen Herbein	1a1bf31032	lua: switch self.version[:2] to .up_to(2) Previous package would not install correctly, would throw: return os.path.join('share', 'lua', '%d.%d' % self.version[:2]) TypeError: %d format: a number is required, not Version	2016-07-07 18:58:52 -07:00
Stephen Herbein	1b53452618	docbook-xml: replace 'cp -t' with install_tree '-t' is not supported by the default cp on Mac OS X replace with install/install_tree cannot just use install_tree since shutil.copytree insists that the dst directory not exist	2016-07-07 17:41:53 -07:00
Nicolas Richart	d339f2af29	flake8 corrections	2016-07-07 18:22:27 +02:00
Nicolas Richart	4c1b53660d	fixes #719	2016-07-07 18:18:01 +02:00
Paul Hopkins	a2be05f24b	Fix whitespace	2016-07-07 14:00:37 +01:00
Paul Hopkins	719b6bfffd	Modify range for ucs4 2.* configure arguments	2016-07-07 13:18:40 +01:00
Paul Hopkins	8c1274bbbb	Fix Python configure arguments for ucs4 variant on Python 3.0 and above	2016-07-07 13:12:43 +01:00
Paul Hopkins	fb6d850637	Add more python versions	2016-07-07 13:09:08 +01:00
Todd Gamblin	6bb31a9a4c	Merge pull request #1175 from davydden/pkg/arpack-3.4.0 Pkg/arpack 3.4.0	2016-07-06 14:45:21 -07:00
Todd Gamblin	91da3d8e64	Merge pull request #1174 from LLNL/bugfix/github-1172-suite-sparse Bugfix/GitHub 1172 suite sparse	2016-07-06 14:35:59 -07:00
Todd Gamblin	c6e89d9283	Merge pull request #1180 from davydden/pkg/oce_update_and_fix oce: add 0.17.2; fix running tests	2016-07-06 14:27:05 -07:00
Denis Davydov	14cef6eab8	oce: flake8 fixes	2016-07-06 22:51:20 +02:00
Denis Davydov	c096bb332a	petsc: fix unit tests	2016-07-06 22:45:43 +02:00
Greg Lee	3df0f1902d	clean up suitesparse deps	2016-07-06 12:15:20 -07:00
Greg Lee	4e27d91351	flake 8 fixes	2016-07-06 11:51:32 -07:00
Denis Davydov	57eaea2e8c	oce: add 0.17.2; fix running tests	2016-07-06 20:35:59 +02:00
Paul Hopkins	61fe89bda0	Add ucs4 unicode variant to Python package	2016-07-06 18:29:54 +01:00
Denis Davydov	3d755a148b	arpack-ng: fix binaries for macOS	2016-07-06 18:30:38 +02:00
alalazo	379f23be02	swiftsim : fixed configuration for metis	2016-07-06 17:51:46 +02:00
Denis Davydov	c8fc56686c	arpack-ng: fix corrupted parpack_cmake.patch	2016-07-06 13:42:59 +02:00
Denis Davydov	63e45c586c	arpack-ng: flake8 fixes and minor update of incode comments	2016-07-06 13:27:02 +02:00
Denis Davydov	a47b3ba01b	arpack-ng: use spec['mpi'].mpif77	2016-07-06 13:23:51 +02:00
Denis Davydov	f5f7abd71f	arpack-ng: add 3.4.0 with cmake build	2016-07-06 12:59:42 +02:00
Greg Lee	4c063c6055	kludge to get suite-sparse-4.5.1 to link with -lstdc++	2016-07-05 13:48:32 -07:00
Greg Lee	976b2b4d25	added suitesparse version 4.5.3	2016-07-05 13:45:22 -07:00
Erik Schnetter	79b3ef0362	Don't enforce `hdf5~mpi`	2016-07-05 10:58:11 -04:00
alalazo	55c4a676ad	gts : added package	2016-07-05 14:30:48 +02:00
Todd Gamblin	d687e332ad	Fix compile bugs for gcc on Mac OS X with macports. - add macports to things that are cleaned out of the environment. - linker incompatibilities cause issues with packages like OpenSSL. - also clean up NOQA stuff in OpenSSL	2016-07-04 22:59:02 -07:00
Todd Gamblin	f2a692c515	Merge pull request #1163 from epfl-scitas/fixes/reserved_name_for_system_packages fixes : reserved name for system packages	2016-07-04 21:25:50 -07:00
Todd Gamblin	d166c04db5	Merge pull request #1166 from glennpj/rstan New package - RStan	2016-07-04 21:23:10 -07:00
Todd Gamblin	1de675e976	Merge pull request #1165 from robertdfrench/ruby-needs-ffi-zlib Ruby 2.2.0 needs ffi and zlib	2016-07-04 21:22:38 -07:00
Glenn Johnson	d5abcc5c88	Fix flake errors	2016-07-04 17:55:10 -05:00
Glenn Johnson	519b760222	New package - RStan This PR creates the RStan package and its dependencies.	2016-07-04 17:30:05 -05:00
Robert D. French	53bbbfbe21	Require libffi, zlib; Make Openssl, readline optional	2016-07-04 15:21:13 -04:00
Nicolas	85982017b6	Revert "Corrected the shared libraries and tests in mumps package"	2016-07-04 18:19:09 +02:00
alalazo	861f174f66	qa : fixed flake8 issues	2016-07-04 10:26:32 +02:00
alalazo	3e8391458c	openssl : changed tag for system reserved versions fixes #1150	2016-07-04 10:25:20 +02:00
Todd Gamblin	890df7153a	Merge branch 'efischer/160311-StagedPackage' of https://github.com/citibeth/spack into citibeth-efischer/160311-StagedPackage	2016-07-04 00:27:32 -07:00
Glenn Johnson	729f23b432	Use Executable to set script Use `Executable("./install.sh")` to set `install_script`. This allows it to work when the current directory is not on the PATH.	2016-07-01 22:13:40 -05:00
Tzanio Kolev	137db14b75	Update package.py	2016-06-30 15:40:02 -07:00
Tzanio	d3b0cb56b7	Updating MFEM package with v3.2 info.	2016-06-30 15:23:30 -07:00
Elizabeth Fischer	50ac98bc04	Merge remote-tracking branch 'upstream/develop' into efischer/160630-StagedPackage # Conflicts: # lib/spack/docs/packaging_guide.rst # lib/spack/spack/package.py Mostly minor/formatting issues in lib/spack/spack/package.py (the heavyweight merge was already done recently). Only one serious issue: it looks like the feature branch had accidentally deleted the line `spack.hooks.post_install(self)`. This got added back in from develop.	2016-06-30 09:13:24 -04:00
Todd Gamblin	a7b8cb6901	Merge pull request #1145 from davydden/pkg/petsc_tests petsc: run a test	2016-06-30 01:58:35 -07:00
Denis Davydov	6f4b0e9bda	petsc: fix flake8 and ~mpi case in tests	2016-06-30 08:22:01 +02:00
Denis Davydov	37728afada	petsc: run a test	2016-06-30 00:19:50 +02:00
Adam J. Stewart	2fcaa011ce	Add py-restview package	2016-06-29 12:57:58 -05:00
Todd Gamblin	7df89896f4	Merge pull request #1113 from davydden/octave_extensions Octave extensions	2016-06-29 00:38:05 -07:00
Todd Gamblin	0fd58fb585	Merge pull request #1133 from davydden/pkg/dealii_fix_tests dealii: run more unit tests when building @dev	2016-06-28 10:02:43 -07:00
Denis Davydov	32c801bbf6	dealii: run more unit tests when building @dev	2016-06-28 18:06:56 +02:00
Todd Gamblin	ad48ad7586	Merge pull request #1131 from epfl-scitas/fixes/swift_git_environment_variables fix : swiftsim will set git environment variables in the appropriate hook	2016-06-28 09:05:26 -07:00
alalazo	5cdd37959a	swiftsim : substituted tag with corresponding commit	2016-06-28 18:03:28 +02:00
Todd Gamblin	6810965457	Merge pull request #1130 from davydden/gmsh Gmsh -- various fixes	2016-06-28 08:49:06 -07:00
alalazo	18612eca59	qa : fixed flake8 issues	2016-06-28 12:59:13 +02:00
alalazo	48888b0f8e	swift : setting environment variables in the right place	2016-06-28 12:57:19 +02:00
Denis Davydov	c4c167c1ca	octave: rename executable Octave to octave	2016-06-28 11:25:45 +02:00
Denis Davydov	51b0f53b33	gmsh: flake8 fixes	2016-06-28 10:50:35 +02:00
Denis Davydov	06e38d2ca2	gmsh: various fixes (i) add new version (ii) add OCE, PETSc and SLEPc as dependencies (iii) fix Blas/Lapack configuration (iv) disable internal Metis which does not compile	2016-06-28 10:33:25 +02:00
Todd Gamblin	793c9f5546	Merge pull request #1116 from mwilliammyers/package-lrzip Add package lrzip & its dependency lzo	2016-06-27 22:32:57 -07:00
mwilliammyers	9bb918915f	Add package lrzip & its dependency lzo	2016-06-27 15:19:13 -06:00
Todd Gamblin	d7c2f683d9	Merge pull request #1004 from UCL-RITS/bare-eigen Option to install eigen without dependencies	2016-06-27 13:35:35 -07:00
Nicolas Richart	9026fb8e8a	Corrections for PETSc 3.7 and detection of PETSC version to enable TAO	2016-06-27 20:52:05 +02:00
Todd Gamblin	3ea9d1e665	Merge pull request #1122 from LLNL/bugfix/newarch-sys_type Bugfix/newarch sys type	2016-06-27 10:07:03 -07:00
Todd Gamblin	bf4eeb48b9	Merge pull request #1099 from adamjstewart/fixes/hdf5 Fix self-check for hdf5@1.10.0-patch1	2016-06-27 09:47:17 -07:00
Todd Gamblin	76458f5bfc	Merge pull request #1002 from epfl-scitas/packages/foam-extend Package foam-extend	2016-06-27 09:40:49 -07:00
Denis Davydov	0faa6dd753	octave: make extendable and add a package	2016-06-27 13:44:58 +02:00
Todd Gamblin	305d5698df	Rename spack.architecture.sys_type() to spack.architecture.platform()	2016-06-27 02:19:08 -07:00
alalazo	13fcb3c083	swift : renamed swiftsim	2016-06-27 09:25:58 +02:00
alalazo	f3f309a22a	Merge branch 'develop' of https://github.com/LLNL/spack into packages/swift_durham	2016-06-27 09:08:37 +02:00
Todd Gamblin	a1db306a0c	Merge pull request #1009 from epfl-scitas/packages/emacs Emacs: adding dependencies to be able to build without the system libs	2016-06-26 22:46:45 -07:00
Todd Gamblin	bad32724ec	Merge pull request #1092 from adamjstewart/features/netcdf-f Add latest version of netcdf-fortran and curl	2016-06-26 22:38:00 -07:00
Todd Gamblin	8b35940857	Merge pull request #1103 from adamjstewart/features/mpi Add MPI environment variables to packages	2016-06-26 22:35:39 -07:00
Todd Gamblin	f86f6c6274	Merge pull request #1104 from mwilliammyers/py-protobuf Add new package py-protobuf	2016-06-26 22:28:57 -07:00
Todd Gamblin	7d85902f37	Merge pull request #1093 from eschnett/eschnett/julia-update Update Julia to 0.4.6	2016-06-26 22:28:33 -07:00
Todd Gamblin	c096aa9557	Merge pull request #997 from glennpj/glib_gcc Get glib to compile with gcc-6.1	2016-06-26 22:28:07 -07:00
Nicolas Richart	f3accb111e	correcting flake8	2016-06-27 01:23:14 +02:00
Nicolas Richart	7cf1313572	changes to use from_sourcing_file	2016-06-27 00:55:26 +02:00
alalazo	9de0503188	qa : flake8 issues	2016-06-26 22:00:10 +02:00
alalazo	11863d2de3	packages : moved adios and mxml into builtin repo	2016-06-26 21:56:06 +02:00
alalazo	a2ba60f6a8	qa : flake8 issues	2016-06-26 17:38:48 +02:00
alalazo	e5b36583b5	swift : added package	2016-06-26 17:36:53 +02:00
alalazo	acd9014553	autotools : set Executable() in dependent modules	2016-06-26 17:36:33 +02:00
mwilliammyers	2c6c21a3bf	Add new package py-protobuf	2016-06-23 15:54:20 -06:00
Adam J. Stewart	8921bf4552	Add MPI environment variables to packages	2016-06-23 10:08:40 -05:00
Adam J. Stewart	d566510a40	Flake8 and url_for_version fixes	2016-06-22 15:22:42 -05:00
Adam J. Stewart	3f4bf04dde	Fix self-check for hdf5@1.10.0-patch1	2016-06-22 14:40:51 -05:00
Erik Schnetter	c904a42c5b	Address flake errors	2016-06-22 11:09:45 -04:00
Adam J. Stewart	b66f5b6231	Add latest version of cURL	2016-06-22 10:05:20 -05:00
Erik Schnetter	e398c0dc5b	Update Julia to 0.4.6	2016-06-22 11:00:00 -04:00
Adam J. Stewart	060fb596f7	Add latest version of netcdf-fortran	2016-06-22 09:52:17 -05:00
Nicolas Richart	97feca0888	Merge branch 'develop' into packages/foam-extend	2016-06-22 14:51:57 +02:00
Todd Gamblin	e41d67e031	Merge pull request #1078 from adamjstewart/features/pillow Allow py-pillow to link to Spack-built libraries	2016-06-22 01:11:25 -07:00
Todd Gamblin	8b5467e65d	Merge pull request #1049 from glennpj/newR_database New R database packages	2016-06-21 13:23:58 -07:00
Adam J. Stewart	a7ffb2c1a4	Flake8	2016-06-21 15:21:53 -05:00
Todd Gamblin	bbe2db5814	Merge pull request #1087 from LLNL/bugfix/new-harfbuzz-fix Bugfix/new harfbuzz fix	2016-06-21 13:10:50 -07:00
Adam J. Stewart	66089c89aa	Depend on pil	2016-06-21 14:55:49 -05:00
Adam J. Stewart	2efc67da60	Remove +tk variant, provide pil	2016-06-21 14:50:33 -05:00
Gregory L. Lee	e0fbf14f99	consolidated f2py regex	2016-06-21 09:23:58 -07:00
Gregory L. Lee	8f3954c1bd	flake 8 fixes for cairo, freetype, and harfbuzz	2016-06-21 08:47:22 -07:00
Gregory L. Lee	4041f45b6c	fixed conflicts in python package	2016-06-21 08:47:11 -07:00
Todd Gamblin	f18e1a9371	Merge branch 'features/cantera' of https://github.com/adamjstewart/spack into adamjstewart-features/cantera	2016-06-20 23:53:48 -07:00
Glenn Johnson	77cd474a2d	Make all packages lowercase.	2016-06-20 20:10:44 -05:00
alalazo	b86e3047f3	openmpi : revert part of #1079 (OpenMPI can be built without fortran) Building OpenMPI without fortran is possible, and was already handled. Raising an install error we effectively renounce at clang+OpenMPI. build_environment : sets 'CC', 'CXX', and similar variables only if a compiler is found	2016-06-20 20:46:11 +02:00
Todd Gamblin	f74d4b0660	Merge pull request #1052 from adamjstewart/features/psi4 Add Psi4 Package	2016-06-20 10:49:45 -07:00
Todd Gamblin	9b299cb2bb	Merge pull request #1023 from epfl-scitas/packages/mumps Corrected the shared libraries and tests in mumps package	2016-06-20 10:48:12 -07:00
Todd Gamblin	cec283f608	Merge pull request #1059 from epfl-scitas/packages/mpi_wrappers_with_rpath MPI : have wrappers set RPATH instead of RUNPATH	2016-06-20 10:47:24 -07:00
Todd Gamblin	c2d0870924	Merge pull request #1063 from eschnett/eschnett/openmpi-1.10.3 Update OpenMPI to 1.10.3	2016-06-20 10:45:56 -07:00
Todd Gamblin	31bb47356f	Merge pull request #1022 from glennpj/r-devtools new package: r-devtools	2016-06-20 10:34:23 -07:00
Todd Gamblin	b3881701c5	Merge pull request #1021 from glennpj/packrat new package: r-packrat	2016-06-20 10:33:55 -07:00
Todd Gamblin	0fbd2fe224	Merge pull request #1000 from glennpj/new_R Add version 3.3.0 of R and extensions	2016-06-20 10:33:43 -07:00
Todd Gamblin	c09111bbef	Merge pull request #1053 from davydden/pkg/dealii_suite_update update Petsc, Slepc, Trilinos, Superlu-dist and deal.II	2016-06-20 10:32:52 -07:00
Todd Gamblin	8047edfb56	Merge pull request #1029 from adamjstewart/features/armadillo Add Armadillo and SuperLU packages	2016-06-20 10:29:29 -07:00
Todd Gamblin	265b9bcb0f	Merge pull request #1076 from JRWynneIII/ferret Added spec to build Ferret	2016-06-20 10:28:42 -07:00
Adam J. Stewart	c9eb5f8173	Use non-checksummed PyPi download URLs	2016-06-20 12:24:45 -05:00
Adam J. Stewart	7e1ee463ca	Install examples for sundials	2016-06-20 12:24:45 -05:00
Adam J. Stewart	81ac3b62fc	Filter compilers and link boost properly	2016-06-20 12:24:45 -05:00
Adam J. Stewart	a21e845ce7	Flake8	2016-06-20 12:24:45 -05:00
Adam J. Stewart	2220784eda	Add scons support, .zip support, and Cantera package	2016-06-20 12:24:45 -05:00
Todd Gamblin	12b9d6da10	Merge pull request #1083 from robertdfrench/tmux-2.2 Tmux 2.2	2016-06-20 09:36:55 -07:00
Robert.French	83b0c16728	Tmux 2.2 with PEP8 Tmux 2.2 Provide variant to skip utempter Remove utempter variant; 2.2 doesn't need it Flake8ify	2016-06-20 16:26:49 +00:00
Erik Schnetter	e43eaad557	New package porta	2016-06-19 14:11:36 -04:00
Erik Schnetter	a0c0728ea8	New package polymake	2016-06-19 13:47:26 -04:00
Erik Schnetter	b4da4425ff	Add header files to lrslib install	2016-06-19 13:47:02 -04:00
Erik Schnetter	fa471a4ed1	Add missing header files to Bliss install	2016-06-19 13:46:38 -04:00
Erik Schnetter	d8b9cda632	Build Bliss both with and without GMP	2016-06-19 12:48:47 -04:00
Denis Davydov	cf4a34c657	openmpi: raise an error without Fortran compiler	2016-06-19 11:59:29 +02:00
Denis Davydov	1cc04cff27	openblas: raise an error without Fortran compiler	2016-06-19 11:59:10 +02:00
Erik Schnetter	71e92774eb	New package cddlib	2016-06-18 22:47:59 -04:00
Erik Schnetter	8fa8fc239f	New package "nauty and Traces"	2016-06-18 22:22:58 -04:00
Erik Schnetter	e5b08544ff	New package Panda	2016-06-18 22:02:36 -04:00
Erik Schnetter	2009354719	Add fourier tool to lrslib	2016-06-18 21:38:15 -04:00
Erik Schnetter	a5086f474e	New package lrslib	2016-06-18 18:03:09 -04:00
Erik Schnetter	92a7c0ddd5	Update Bliss to use -O3	2016-06-18 18:02:52 -04:00
Erik Schnetter	64aaf7ba81	New package cdd	2016-06-18 16:37:08 -04:00
Erik Schnetter	83d4cdc090	Update Bliss	2016-06-18 16:36:43 -04:00
Erik Schnetter	a07056d67b	Add Bliss package	2016-06-18 16:20:37 -04:00
Adam J. Stewart	652a5eb592	Allow py-pillow to link to Spack-built libraries	2016-06-17 18:09:03 -05:00
Todd Gamblin	62b2f2a7c9	Merge pull request #1065 from epfl-scitas/packages/espresso_update espresso : update to 5.4.0	2016-06-17 14:51:45 -07:00
Todd Gamblin	9a8d109650	Merge pull request #1044 from adamjstewart/features/sncosmo Add py-sncosmo package	2016-06-17 14:50:37 -07:00
Todd Gamblin	0bbbfc2ef7	Merge pull request #946 from LLNL/features/intel2 Intel software packages and license enhancements	2016-06-17 14:28:39 -07:00
Adam J. Stewart	536fa73d5f	Python flake8 overhaul	2016-06-17 13:33:09 -05:00
Robert D. French	448f8c43d4	Added working Ferret spec Fixed ferret spec. It builds now Made ferret spec more flake8-y Fixed homepage and info text about Ferret Removed vim swap file Reverted changes to netcdf-fortran spec and added netcdf~mpi dependency to ferret spec to compensate for it Fixed flake8 issues!	2016-06-17 14:23:50 -04:00
Adam J. Stewart	80d444624b	Fix activation of sites.py for sncosmo	2016-06-17 11:08:16 -05:00
Adam J. Stewart	24f65c502e	Add additional Astropy dependencies	2016-06-17 10:45:10 -05:00
Adam J. Stewart	b2aa78d6ab	Remove version constraints	2016-06-17 10:45:10 -05:00
Adam J. Stewart	4eeaff175c	Allow packages to build	2016-06-17 10:44:28 -05:00
Adam J. Stewart	a660c60eb1	Add py-sncosmo package	2016-06-17 10:43:34 -05:00
Glenn Johnson	8970785d33	Add 'jdk' as a dependency. Add jdk as a dependency so that R has support for java and allow packages that need java to work.	2016-06-16 23:08:55 -05:00
Glenn Johnson	a813f03955	Add list_url for old versions.	2016-06-16 23:08:55 -05:00
Glenn Johnson	4850b9d4d1	Make install comment consistent with actual call.	2016-06-16 23:08:55 -05:00
Glenn Johnson	7da405e630	Add validator for bioconductor packages This commit adds a validator function to make sure the versions of R and bioconductor are in sync.	2016-06-16 23:08:55 -05:00
Glenn Johnson	7213b12324	Tweak how R packages are built. Add bzip2 as a dependency to base R. Switch from installing the R packages from tar files to installing from the extracted directory. This is more in line with a standard install and also allows installing from VCS. Use the Bioconductor version for BiocGenerics and future Bioconductor packages. Suffix the package with 'bioc-$version' to indicate which Bioconductor release the package is a part of. This is actually more important than the actual version attached to individual packages although those are subject to change within the Bioconductor branch.	2016-06-16 23:08:55 -05:00
Glenn Johnson	0e64c25ffc	Fix flake8 errors Use Bioconductor provided Short URL for homepage in BiocGenerics. Wrap description text for utf variant in pcre.	2016-06-16 23:08:54 -05:00
Glenn Johnson	37dc13edaf	Update version of BiocGenerics The BioConductor repositories only keep the most recent version so this has to be bumped.	2016-06-16 23:08:54 -05:00
Glenn Johnson	8704a4ed35	Use configure_args rather than options Replaced 'options' with 'configure_args'. That seems like a better name and is consistent with the packaging guide.	2016-06-16 23:08:54 -05:00
Glenn Johnson	fe256870b4	Add variant for UTF support to pcre This will build PCRE with UTF support by default. That seems to be reasonable for most environments.	2016-06-16 23:08:54 -05:00
Glenn Johnson	cb3505769b	Clean up R extensions Run the existing R extension packages through autopep8 to clean up.	2016-06-16 23:07:13 -05:00
Glenn Johnson	6649f9edc2	Add version 3.3.0 of R This commit adds the 3.3.0 version of R and adds dependencies on curl and pcre.	2016-06-16 23:07:13 -05:00
Glenn Johnson	64acbbfcf0	Clean up R package files - remove unused imports - apply pep8 - reformat text strings	2016-06-16 23:07:13 -05:00
Todd Gamblin	9ee6cbfb40	Merge pull request #944 from adamjstewart/features/bertini Add bertini package	2016-06-16 16:57:50 -07:00
Todd Gamblin	344280154a	Merge pull request #962 from adamjstewart/features/hpl Add HPL benchmark package	2016-06-16 16:57:24 -07:00
Todd Gamblin	88b73bacdb	Merge branch 'features/newarch' into develop Conflicts: lib/spack/spack/config.py var/spack/repos/builtin/packages/lua/package.py	2016-06-16 03:03:26 -07:00
alalazo	a1cbb73f8b	qa : fixed flake8 issues	2016-06-16 11:24:18 +02:00
alalazo	8d9ffcf565	espresso : updated to 5.4.0, added Parallel=False	2016-06-16 11:22:26 +02:00
Todd Gamblin	76dfaa71a7	fix up packages for new architecture.	2016-06-16 01:47:20 -07:00
Todd Gamblin	40d25d9062	Add libxcb dependencies. Fix up packages to get py-basemap and stat to build.	2016-06-16 00:56:53 -07:00
Erik Schnetter	a7ab064a9e	Update OpenMPI to 1.10.3	2016-06-15 18:05:23 -04:00
Massimiliano Culpo	daa46105a7	mpich based providers : shortened filter_compilers	2016-06-15 21:37:12 +02:00
Adam J. Stewart	44e188f111	Remove MPI support, fix INCLUDE filters	2016-06-15 14:17:30 -05:00
Adam J. Stewart	7b97ea248a	More template filtering	2016-06-15 14:17:29 -05:00
Adam J. Stewart	9cf1257be4	Filter compilers	2016-06-15 14:17:29 -05:00
Adam J. Stewart	deb4f919cf	Psi4 tweaks	2016-06-15 14:17:29 -05:00
Adam J. Stewart	9d99042fed	Add Psi4 package	2016-06-15 14:17:29 -05:00
Denis Davydov	0e04e65ae0	trilinos: specify superlu-dist version dependency	2016-06-15 18:44:59 +02:00
Denis Davydov	5fe531050c	flake8 fixes for dealii	2016-06-15 18:33:34 +02:00
Denis Davydov	e76083205f	flake8 fixes for slepc	2016-06-15 18:33:08 +02:00
Denis Davydov	6390acc660	flake8 fixes for petsc	2016-06-15 18:32:42 +02:00
Denis Davydov	6d714e4425	flake8 fixes for superlu-dist	2016-06-15 18:31:39 +02:00
Denis Davydov	d0d83cfe1e	slepc: build by default with Arpack	2016-06-15 18:21:13 +02:00
Denis Davydov	d04dc8440f	dealii: specify petsc/slepc version dependencies	2016-06-15 18:21:13 +02:00
Denis Davydov	4d40f86bd3	trilinos: add 12.6.2 and 12.6.3	2016-06-15 18:21:13 +02:00
Denis Davydov	5358ffbe5a	slepc: add 3.6.3 and 3.7.1; specify petsc version dependency	2016-06-15 18:21:13 +02:00
Denis Davydov	9ceb8fea78	petsc: add 3.6.4 and 3.7.2; specify superlu-dist version dependency	2016-06-15 18:21:13 +02:00
Denis Davydov	a860a3d614	superlu-dist: avoid harcoding blas/lapack/mpi; remove preferred version	2016-06-15 18:21:13 +02:00
Todd Gamblin	c803f7ae98	Merge pull request #1045 from eschnett/eschnett/openmpi-verbs-usr Do not pass "/usr" or "/usr/local" as path to configure	2016-06-15 09:06:12 -07:00
Todd Gamblin	4ede87a8b0	Merge pull request #1058 from eschnett/eschnett/blosc Add packages c-blosc and hdf5-blosc	2016-06-15 09:04:48 -07:00
Todd Gamblin	9dd1f2747a	Merge pull request #1028 from JRWynneIII/boost-graph-parallel-fix Add variant for boost graph and parallel graph	2016-06-15 09:03:01 -07:00
Todd Gamblin	08badb5a35	Merge pull request #1040 from KineticTheory/pkg-trilinos Make Boost an optional feature of Trilinos.	2016-06-15 08:57:38 -07:00
Todd Gamblin	ff3469385b	Merge pull request #1037 from KineticTheory/develop Package serf also depends on zlib.	2016-06-15 08:57:14 -07:00
Todd Gamblin	bfedeadacb	Merge pull request #1031 from opoplawski/pcre Add patch to compile pcre with Intel 16.0.3 compiler	2016-06-15 08:56:53 -07:00
alalazo	b09bee8158	qa : fixed flake8 issues	2016-06-15 13:29:30 +02:00
alalazo	b59d4f243b	openmpi, mvapich2, mpich : filtered out "--Wl,--enable-new-dtag" in wrappers, as it turns RPATH into RUNPATH Apart from that turned `os.path.join` into `join_path` and `os.environ` into `env` in the packages	2016-06-15 13:21:39 +02:00
Erik Schnetter	05d7378da5	Install shared libraries correctly on Linux	2016-06-14 17:13:20 -04:00
Erik Schnetter	ca5180f7a2	Correct Blosc install on Darwin	2016-06-14 17:03:00 -04:00
Erik Schnetter	e6ec372926	Add packages c-blosc and hdf5-blosc c-blosc provides the Blosc compression filter, and hdf5-blosc provides a plugin for HDF5 to use that filter.	2016-06-14 09:59:48 -04:00
Glenn Johnson	e226837d33	Fix flake8 error.	2016-06-13 23:04:26 -05:00
Glenn Johnson	8861c99333	New package - r-foreign	2016-06-13 22:50:07 -05:00
Glenn Johnson	5ba5ef6c46	Add list_url for older versions.	2016-06-13 17:50:27 -05:00
Glenn Johnson	94d0f21823	New package - r-xlsxjars	2016-06-13 17:50:06 -05:00
Glenn Johnson	4767185082	New package - r-xlsx	2016-06-13 17:48:59 -05:00
Glenn Johnson	5cd09af066	New package - r-XLConnect	2016-06-13 17:48:44 -05:00
Glenn Johnson	3c234a7d3b	New package - r-XLConnectJars	2016-06-13 17:36:50 -05:00
Glenn Johnson	450b082daf	Do not need to depend on jdk here because R itself does.	2016-06-13 17:35:35 -05:00
Glenn Johnson	427fa7fd0a	New package - rJava	2016-06-13 17:26:01 -05:00
David Boehme	52160bff18	Use https for github	2016-06-13 11:47:28 -07:00
Glenn Johnson	d398ebe21f	New package - r-RSQLite	2016-06-12 22:06:06 -05:00
Glenn Johnson	b96b32e9ec	New package - r-RPostgreSQL	2016-06-12 22:05:45 -05:00
Glenn Johnson	77e8096a6f	New package - r-RODBC	2016-06-12 22:05:26 -05:00
Glenn Johnson	bfb0985c38	New package - r-RMySQL	2016-06-12 22:05:10 -05:00
Glenn Johnson	a7a640bfb8	New package - rDBI	2016-06-12 22:04:37 -05:00
Glenn Johnson	b05a565648	New package - mariadb	2016-06-12 22:04:09 -05:00
Glenn Johnson	5d3965c7a6	New package - unixODBC	2016-06-12 22:03:24 -05:00
Glenn Johnson	7727f6fc7e	New package - libaio	2016-06-12 22:02:46 -05:00
Glenn Johnson	4dcb15cf6d	Ran through autopep8 and cleaned up.	2016-06-12 22:00:49 -05:00
Glenn Johnson	bdb9af63ed	Add version 9.5.3 and add readline as a dependency.	2016-06-12 21:58:41 -05:00
Glenn Johnson	8ff7cbb9ce	Run binutils/package.py through autopep8.	2016-06-12 21:57:03 -05:00
Glenn Johnson	1601cf1b14	Patch binutils This commit adds a patch to update symbol versions from linker scripts. This is seen with libmysqlclient.so which has to maintain compatibility across two versions. Only one can be the default. https://sourceware.org/git/gitweb.cgi?p=binutils-gdb.git;a=commitdiff;h=544ddf9322b1b83982e5cb84a54d084ee7e718ea	2016-06-12 21:46:11 -05:00
Kelly (KT) Thompson	31d2c38687	Update formatting to meet code style requirements.	2016-06-12 19:56:29 -06:00
Kelly (KT) Thompson	b89bcdff62	Make Boost an optional feature of Trilinos. I have been unable to build Boost with some toolset/platform combinations. The users I support don't need the Boost features in Trilinos, so I have been manually hacking trilinos/package.py to disable boost. I would like to propose that these changes be added to the released version. + Add boost as a variant, default to true so there is no change to existing behavior. + Move the CMake configure options related to Boost into a conditional block that is triggered by "if '+boost' in spec".	2016-06-12 19:48:45 -06:00
Tom Scogland	1b28991e0a	Merge pull request #1026 from epfl-scitas/packages/lmod lmod : updated package and dependencies	2016-06-12 17:01:41 -07:00
Glenn Johnson	59c9816dbf	Make quotations in variables consistent.	2016-06-11 16:01:23 -05:00
Glenn Johnson	0e9f8bd38d	Add list_url for old versions.	2016-06-11 15:53:28 -05:00
Erik Schnetter	953b65abcc	Do not pass "/usr" or "/usr/local" as path to configure	2016-06-11 16:41:39 -04:00
Glenn Johnson	6c0ea77d1d	Add list_url for older versions.	2016-06-11 15:36:43 -05:00
Adam J. Stewart	85502e34f9	CMake knows how to create PIC	2016-06-10 14:35:19 -05:00
Kelly (KT) Thompson	883f601bca	Fix style issues.	2016-06-09 19:18:25 -06:00
Kelly (KT) Thompson	915115386a	Package serf also depends on zlib. + Add zlib as a required dependency. + Point scons build system to the spack provided zlib installation.	2016-06-09 18:30:28 -06:00
Orion Poplawski	454acf58af	Add additional blank line for flake8	2016-06-08 16:49:42 -06:00
Orion Poplawski	e3ca5e6676	Add patch to compile pcre with Intel 16.0.3 compiler	2016-06-08 16:23:04 -06:00
Adam J. Stewart	65896ff2ed	Add Armadillo and SuperLU packages	2016-06-08 14:11:14 -05:00
James Riley Wynne III	4b9707f8ea	Fixed flake8 formatting problems	2016-06-08 14:36:45 -04:00
James Riley Wynne III	42a10d5690	Fixes issue #438	2016-06-08 12:43:05 -04:00
Nicolas Richart	2d21693b9d	Missing file to patch mumps	2016-06-08 17:09:13 +02:00
alalazo	564483936f	qa : fixed flake8 issues	2016-06-08 16:33:49 +02:00
alalazo	4a61efe641	lmod : fixed issues with LUA_PATH during installation	2016-06-08 16:21:09 +02:00
alalazo	f4a39457de	lmod : updated package and dependencies	2016-06-08 15:35:15 +02:00
Nicolas Richart	165411f4a5	bug fix in the +mpi case	2016-06-08 15:17:12 +02:00
Nicolas Richart	498c098d11	Cleaning flake warnings in mumps package	2016-06-08 14:57:54 +02:00
Nicolas Richart	e124c86a4f	Corrected the shared libraries and tests in mumps package	2016-06-08 14:17:46 +02:00
Glenn Johnson	bb19dffb26	Fix flake8 error.	2016-06-07 23:40:12 -05:00
Glenn Johnson	ad0cfa41aa	Fix flake8 errors	2016-06-07 23:37:49 -05:00
Glenn Johnson	738720a000	new package: r-devtools This PR brings in the R devtools package and it dependencies.	2016-06-07 23:20:46 -05:00
Greg Lee	bb57b82794	flake8 fixes	2016-06-07 20:15:02 -07:00
Glenn Johnson	2262bc95f1	new package: r-packrat Manage the R packages your project depends on in an isolated, portable, and reproducible way. https://github.com/rstudio/packrat/	2016-06-07 22:04:11 -05:00
Greg Lee	25b2f7b1d7	put older versions back + version-specific dwarfdump dir	2016-06-07 20:02:38 -07:00
Mayeul d'Avezac	0b5ce9e16a	💄 style points requested by flake8	2016-06-03 11:52:19 +01:00
Nicolas Richart	8b6035ab82	Making emacs dependent on internal packages	2016-06-03 00:24:00 +02:00
Todd Gamblin	3d2b25e45c	Merge pull request #1014 from epfl-scitas/packages/mvapich2 Changes to take into account slurm in version @2.1: of mvapich2	2016-06-02 01:08:28 -07:00
Todd Gamblin	27bc49d8c8	Merge pull request #1001 from ashkan2200/develop Dealii, fixed issue with tests	2016-06-02 01:01:29 -07:00
Todd Gamblin	b843b73bb5	Merge pull request #1005 from eschnett/eschnett/hdf5-update Update HDF5 to version 1.10.0-patch1	2016-06-02 00:57:15 -07:00
Todd Gamblin	1fb4fa02e3	Merge pull request #1010 from epfl-scitas/packages/tetgen Adding a version to tetgen	2016-06-02 00:54:09 -07:00
Nicolas Richart	53dcc39b72	removing useless selfs	2016-06-01 17:33:54 +02:00
Nicolas Richart	3ab8468e73	Correcting the flake8 warnings	2016-06-01 16:43:08 +02:00
Nicolas Richart	0451c8e55f	Addapting the mvapich2@2.1: configure options for slurm	2016-06-01 15:58:00 +02:00
Nicolas Richart	d802144f39	Introduced a bug by correcting flake8 warnings	2016-06-01 03:31:29 +02:00
Nicolas Richart	5d4a0e4050	Corrections for flake8	2016-06-01 03:28:42 +02:00
Nicolas Richart	97bad2c1ac	Corrections for flake8	2016-06-01 03:25:37 +02:00
Nicolas Richart	58052e6632	Adding package fenics	2016-06-01 03:20:56 +02:00
Nicolas Richart	cb673765c2	Adding a version to tetgen	2016-06-01 03:02:48 +02:00
Nicolas Richart	0df0677d5b	Adding a variant to link against the spack libraries instead of the system ones	2016-06-01 03:00:03 +02:00
Nicolas Richart	9db8dc1895	Removing extra dependencies + minor fix according to remarks on #1002	2016-06-01 00:57:01 +02:00
Erik Schnetter	c03c689cb2	Update HDF5 to version 1.10.0-patch1	2016-05-31 12:18:17 -04:00
Adam J. Stewart	564e7f5e5b	Don't build in parallel	2016-05-31 09:32:24 -05:00
Mayeul d'Avezac	29b85fbce0	Eigen can be installed with dependencies	2016-05-31 10:10:12 +01:00
Ali Dorostkar	6f96484f83	Spacing correction More spacing correction	2016-05-31 09:58:29 +02:00
Ali Dorostkar	e82fb5b58f	Fixed spacing Replaced tabs with spaces	2016-05-31 08:44:46 +02:00
Todd Gamblin	f3f0122f11	Merge branch 'develop' into features/newarch	2016-05-30 13:54:53 -07:00
Ali Dorostkar	c4d5bd13c7	dealii, Added comment Added comment for why step-40 is done differently for dealii 8.4.0 and later	2016-05-30 18:11:34 +02:00
Nicolas Richart	fd345c8ef0	Merge branch 'packages/foam-extend' of github.com:epfl-scitas/spack into packages/foam-extend	2016-05-30 17:04:21 +02:00
Nicolas Richart	9f4e599232	Ignoring the flake8 error for a line too long	2016-05-30 16:58:06 +02:00
Nicolas Richart	08c8d1d1f7	limiting package to foam-extend to start	2016-05-30 16:49:25 +02:00
Nicolas Richart	4122ecbc80	First try at OpenFOAM-extend	2016-05-30 16:49:25 +02:00
Ali Dorostkar	4f591a6fe3	Step-40 test for 8.3.0 and earlier Integrated part of step-40 to be tested for earlier versions of dealii	2016-05-30 16:42:24 +02:00
Nicolas Richart	fe79e43459	limiting package to foam-extend to start	2016-05-30 15:46:39 +02:00
Ali Dorostkar	d7e84fe07c	dealii, test for specific version Specified that test case “step-40” is only to be run when using dealii version 8.4.0 or later	2016-05-30 14:03:27 +02:00
Glenn Johnson	66aaaa1751	Add a comment regarding the reason for the patch.	2016-05-29 15:30:09 -05:00
Ali Dorostkar	c2ac47235f	additional versions for Dealii Included additional versions for Deal.II package.	2016-05-29 13:22:19 +02:00
Glenn Johnson	c16d7c481c	Get glib to compile with gcc-6.1 This commit adds a patch to fix the case where gcc-6.1 emits an error for string format literal that was a warning in previous versions of gcc. The patch reference is https://bugzilla.gnome.org/show_bug.cgi?id=761550 Also ran the package file through autopep8.	2016-05-28 23:30:56 -05:00
Mario Melara	33e1dcc476	Adding mock package file for external module	2016-05-28 10:14:40 -07:00
Gregory Becker	9dad7c2ace	re-merged mainline develop	2016-05-27 13:13:19 -07:00
Greg Lee	6dcdb50a3e	Merge branch 'develop' of https://github.com/llnl/spack into develop	2016-05-27 12:44:57 -07:00
Greg Lee	0ae1298d25	updated libdwarf version and dwarfdump build	2016-05-27 12:43:13 -07:00
Adam J. Stewart	dd5a6914f1	Undo changes to flex	2016-05-27 12:56:43 -05:00
Todd Gamblin	f6a0cd1bf8	Merge pull request #973 from eschnett/eschnett/openmpi-verbs Auto-detect verbs location	2016-05-27 11:01:44 -05:00
Todd Gamblin	7b063e3e6c	Merge pull request #975 from adamjstewart/features/stream Add STREAM benchmark package	2016-05-27 10:59:13 -05:00
Todd Gamblin	dc4ca26441	Merge pull request #992 from davydden/update/dealii Update/dealii	2016-05-26 17:39:37 -05:00
Todd Gamblin	96f65479e7	Merge pull request #993 from xjrc/packages/metis Update Package : METIS/ParMETIS	2016-05-26 17:37:33 -05:00
Denis Davydov	040c122719	dealii: formatting	2016-05-26 23:00:22 +02:00
Denis Davydov	0036483ded	dealii: don't hardcode blas and mpi; minor fixes to dependencies	2016-05-26 18:07:27 +02:00
Todd Gamblin	76d42b5200	Merge pull request #982 from trws/rust Rust	2016-05-25 15:15:51 -05:00
Joseph Ciurej	734fb459a4	Fixing a small bug with metis@4+shared installs on the Mac platform.	2016-05-25 12:27:52 -07:00
Joseph Ciurej	483ec0d762	Added preliminary improved testing code for METIS@:4.	2016-05-24 16:13:52 -07:00
Joseph Ciurej	c9ba73d931	Added staging support and improved error handling for METIS@:4 installs.	2016-05-24 16:05:29 -07:00
Joseph Ciurej	b5d0a38860	Fixed a few linking/testing bugs in the METIS@:4 install method.	2016-05-24 15:03:21 -07:00
Greg Lee	1bca69f272	updated launchmon url and version	2016-05-24 14:54:09 -07:00
Joseph Ciurej	064d3584c0	Updating 'metis' and 'parmetis' to conform to PEP8 standards.	2016-05-24 12:28:05 -07:00
Joseph Ciurej	0ef6843d85	Improved MPI path specification for ParMETIS using PR #893 features.	2016-05-24 12:28:05 -07:00
Joseph Ciurej	9c95ec0b29	Updated and added new versions to the METIS/ParMETIS packages. - Added a 'url_for_version' function to the METIS/ParMETIS packages. - Added installation support for METIS@5.0.2 and ParMETIS@4.0.2. - Changed the 'double' variant to 'real64' to make it more consistent with the 'idx64' variant naming. - Removed an unnecessary dependency on gdb.	2016-05-24 12:28:05 -07:00
Denis Davydov	c78349a3a4	octave: fix formatting	2016-05-23 15:08:10 +02:00
Denis Davydov	ce3146e91a	octave: add missing dependencies and update to 4.0.2	2016-05-23 14:50:06 +02:00
Tom Scogland	00de72272d	rust compiler/builder package, new llvm variants	2016-05-22 11:16:00 -07:00
Tom Scogland	425beb4d97	updates for rust-bindgen	2016-05-22 11:16:00 -07:00
Tom Scogland	404b7c7c4f	initial rust support	2016-05-22 11:16:00 -07:00
Nicolas Richart	4c87ef915f	First try at OpenFOAM-extend	2016-05-22 18:55:29 +02:00
Erik Schnetter	09eed08b9c	Auto-detect verbs location	2016-05-20 16:24:48 -04:00
Todd Gamblin	d94972503a	Merge pull request #964 from davydden/update/tbb tbb: add 4.4.4; raise InstallError when building 4.4.3 with GCC6.1	2016-05-19 22:44:03 -07:00
Nicolas Richart	2e77cc635e	missing @ in version definition	2016-05-20 00:51:58 +02:00
Nicolas Richart	a233ed2de7	changes scotch package to make he coverage test pass	2016-05-20 00:42:34 +02:00
Nicolas Richart	a51566ec6e	changes to simplify the esmumps variant for version < 6.0.0 + typos corrections, according to the remarks on PR #979	2016-05-20 00:31:12 +02:00
Nicolas Richart	1bf306bbbd	Adding +metis variant to scotch + minor changes	2016-05-19 17:26:44 +02:00
Gregory Becker	9f59c128be	Partial merge of mainline develop	2016-05-18 15:13:40 -07:00
Tom Scogland	29635b7bbd	initial docs for find and flake8 cleanup	2016-05-18 14:04:39 -07:00
Adam J. Stewart	434ff28af4	Add STREAM benchmark package	2016-05-18 15:14:21 -05:00
Todd Gamblin	d391670755	Merge pull request #966 from verolero86/develop Add option to disable VT support in openmpi package	2016-05-18 08:36:23 -07:00
Todd Gamblin	78c46aab35	Merge pull request #969 from Rombur/boost Add boost 1.61.0	2016-05-18 08:35:51 -07:00
Todd Gamblin	637da63506	Merge pull request #948 from davydden/bugfix/astyle astyle: fix filter command which failed on OSX with python 2.7.10	2016-05-18 08:35:01 -07:00
Bruno Turcksin	bbbffe7423	Add boost 1.61.0	2016-05-18 08:51:22 -04:00
Denis Davydov	267666cd97	formatting	2016-05-18 08:35:47 +02:00
Greg Lee	582d01784a	added newdtags variant, default to false (i.e., remove --enable-new-dtags)	2016-05-17 21:18:34 -07:00
Todd Gamblin	d592a1655f	Merge pull request #961 from xjrc/features/flake8-improvements Enhancement Proposal: Exempt '@when' Functions from Style Redefinition Errors	2016-05-17 17:00:49 -07:00
Todd Gamblin	502420ceff	Merge branch 'features/cflags' into develop Conflicts: lib/spack/spack/cmd/find.py var/spack/repos/builtin/packages/ghostscript/package.py	2016-05-17 16:44:54 -07:00
Denis Davydov	1a187e73ae	tbb: add 4.4.4; raise InstallError when building 4.4.3 with GCC6.1	2016-05-17 22:57:32 +02:00
Todd Gamblin	138307dd0c	Merge pull request #955 from trws/lua-rework complete lua rework	2016-05-17 13:21:51 -07:00
Veronica G. Vergara Larrea	6c95a5d496	the right flag here is +, the default behavior is controlled in the variant	2016-05-17 14:37:36 -04:00
Adam J. Stewart	f16228d811	Add more install directories	2016-05-17 13:36:38 -05:00
becker33	3d9c8f4fd4	Merge pull request #952 from davydden/package/sed sed: add package	2016-05-17 11:27:57 -07:00
Adam J. Stewart	631cbdbda8	Flake8	2016-05-17 13:22:00 -05:00
Adam J. Stewart	7b9b18f03c	Add HPL benchmark package	2016-05-17 13:14:59 -05:00
Veronica G. Vergara Larrea	471950434e	add a flag to openmpi to allow users to disable vt support	2016-05-17 13:40:01 -04:00
Todd Gamblin	1774c7a7b3	Merge pull request #958 from trws/golang-new Golang new	2016-05-17 05:56:06 -07:00
Tom Scogland	80c02ad36a	flake8-related cleanup	2016-05-17 05:30:35 -07:00
Tom Scogland	af4af94203	rework for gopath and bootstrapping	2016-05-17 05:21:11 -07:00
Joseph Ciurej	761c5c8450	Added line limit exemptions for 'variant' and 'version' directives. Updated the 'scotch' package to use oneline 'variant' directives.	2016-05-16 12:14:57 -07:00
Joseph Ciurej	52c8bedb9c	Updated style checking to ignore refinition errors for '@when' fxns. Updated the Scotch package to conform to PEP8 standards and to test style checking improvements.	2016-05-16 11:09:44 -07:00
Todd Gamblin	a74bc9369b	Merge pull request #953 from citibeth/150514-NetCDFCXX4 netcdf-cxx4: Update to latest released version 4.3.0	2016-05-16 10:58:27 -07:00
Elizabeth Fischer	65ff89a0b0	Placate flake8 demands.	2016-05-16 12:53:24 -04:00
Tom Scogland	62dd040a8f	add GOPATH support Also fixes flex to depend on bison for its yacc implementation.	2016-05-16 09:30:37 -07:00
Tom Scogland	9780427940	fixing more flake8 errors that only appear on travis...	2016-05-16 05:37:04 -07:00
Tom Scogland	dacedfcc0e	formatting to appease flake8	2016-05-16 05:12:30 -07:00
Tom Scogland	52c359bc77	fix linking issue on ubuntu Evidently some readline variants are built with only a dynamic dependency on ncurses, this addresses that problem for such systems.	2016-05-16 03:36:31 -07:00
Todd Gamblin	53df9fbb4f	Merge pull request #959 from davydden/bugfix/doxygen_ghostscript_graphviz Bugfix/doxygen ghostscript graphviz	2016-05-16 00:12:59 -07:00
Denis Davydov	0fbf70d95d	indentation fixes	2016-05-15 23:37:09 +02:00
Denis Davydov	459c647bc9	doxygen: add graphviz variant; enable flex and bison on OSX and they build fine	2016-05-15 19:43:01 +02:00
Tom Scogland	71d9911539	go cleanup, adding hub	2016-05-15 10:23:33 -07:00
Tom Scogland	b7aa47a178	remove debug print	2016-05-15 09:52:09 -07:00
Denis Davydov	a045154b5e	graphviz: add missing dependency and fix installation on darwin	2016-05-15 18:34:50 +02:00
Denis Davydov	21d4f3a356	ghostscript: url was changed upstream	2016-05-15 18:33:06 +02:00
Greg Lee	c2ca5f44b4	flake8 fixes	2016-05-15 08:19:55 -07:00
Tom Scogland	2bfa4d7e4f	removing comments also randomly changed unnecessary licence block	2016-05-14 22:42:14 -07:00
Tom Scogland	577657b3f7	go rework This commit includes: * a new go package that uses gccgo to bootstrap the go toolchain * env support added to Executable * a new Go fetch strategy that uses `go get` to fetch a package and all of its deps * A platinum searcher package that leverages the new go package and fetch strategy	2016-05-14 22:35:55 -07:00
Tom Scogland	0816e9554d	adding go_compiler providers	2016-05-14 18:06:42 -07:00
Tom Scogland	915f91a619	moving go packages to the new path	2016-05-14 18:06:42 -07:00
Tom Scogland	0c33e8ac48	go and a basic go package	2016-05-14 18:06:41 -07:00
Tom Scogland	f50439b990	appeasing the great vengeful flake8 gods	2016-05-14 17:49:06 -07:00
Tom Scogland	0668b6d7ba	changes to appease flake8 for lua-luaposix package	2016-05-14 17:38:32 -07:00
Tom Scogland	21161a60ff	changes to appease flake8 (mostly) for lua package	2016-05-14 17:38:13 -07:00
Glenn Johnson	fffc2d2765	Updated turbomole package file. This PR updates the turbomole package file but does not introduce any new funtionality. The updtes are: - use spack interface for subprocess.PIPE and subprocess.Popen - clean up based on flake8 - remove some extra whitespace	2016-05-14 19:33:45 -05:00
Tom Scogland	b5979b13e3	complete lua rework, also module path fix This is a complete rework of the lua package, it also allows the environment modification classes to handle paths that are not separated by colons, and uses the support for same in TCL modules as well. The biggest difference is the handling for lua extension packages, which now have their paths set correctly by the lua parent package, and have access to both lua and luarocks as installation tools. See the luaposix package for what should be required for most lua packages after this.	2016-05-14 16:18:26 -07:00
Denis Davydov	c5a35acd67	sed: add package	2016-05-14 22:29:16 +02:00
Elizabeth Fischer	4bf9b168a5	netcdf-cxx4: Update to latest released version 4.3.0	2016-05-14 16:19:10 -04:00
Gregory L. Lee	e3cd0a67d0	address flake8 issues	2016-05-13 16:12:48 -07:00
Gregory L. Lee	e9b71872a8	addressed PR#946 comments from @adamjstewart	2016-05-13 15:16:07 -07:00
Todd Gamblin	4a6ec6377d	Merge pull request #940 from gzagaris/feature/doxygen-version-1.8.11 Add doxygen version 1.8.11	2016-05-13 10:10:23 -07:00
Denis Davydov	8db35ab9a2	openblas: use spack_cc/spack_f77 and add a note on compiler mixing	2016-05-13 17:28:30 +02:00
Denis Davydov	67999d1b1c	astyle: fix filter command which failed on OSX with python 2.7.10	2016-05-13 17:13:45 +02:00
George Zagaris	e763eeacdd	fix format in doxygen/package.py	2016-05-12 23:25:10 -07:00
Gregory L. Lee	b8a91db089	Intel software packages and license enhancements	2016-05-12 20:04:45 -07:00
Adam J. Stewart	088dce709e	Make flake8 happy	2016-05-12 16:33:37 -05:00
Adam J. Stewart	ab41fd6692	Add bertini package Also add missing dependency. Flex would not build for me without bison. It complained about not being able to find `yacc`.	2016-05-12 16:21:06 -05:00
Adam J. Stewart	03307f91df	Fix bug when compiling elk~mpi	2016-05-12 10:27:05 -05:00
Adam J. Stewart	3526d92660	Indentation fix	2016-05-12 10:27:05 -05:00
Adam J. Stewart	d7020434d9	Use new-ish blas_shared_lib and more flake8 fixes	2016-05-12 10:27:04 -05:00
Adam J. Stewart	e2e72b14b2	Use new openmp_flag and mpi attributes	2016-05-12 10:26:10 -05:00
George Zagaris	3ece0e7b76	Add doxygen version 1.8.11	2016-05-12 00:42:22 -07:00
Todd Gamblin	e7ced54369	Correct LLNL LGPL license template for clarity.	2016-05-11 21:22:25 -07:00
Todd Gamblin	14fe0b8ad2	Merge pull request #558 from adamjstewart/features/pgi Add Licensed Software Support	2016-05-11 17:17:47 -07:00
Todd Gamblin	2dc49ee88d	Merge pull request #938 from KineticTheory/pkg-moab Provide new package: MOAB	2016-05-11 17:14:05 -07:00
Kelly (KT) Thompson	c5a19b57f7	Clean up formatting.	2016-05-11 16:33:57 -06:00
Gregory Becker	2e1810e3a7	re-merging develop	2016-05-11 15:26:09 -07:00
Kelly (KT) Thompson	8bec127a1d	Attempt to fix formatting issues (flake8).	2016-05-11 14:00:44 -06:00
Kelly (KT) Thompson	9482ce1fce	Remove some extraneous comments.	2016-05-11 12:39:20 -06:00
Kelly (KT) Thompson	e200a41d3d	New package MOAB.	2016-05-11 12:34:33 -06:00
Adam J. Stewart	c043275f1b	Final flake8 changes	2016-05-11 11:46:41 -05:00
Adam J. Stewart	5879f8207f	Flake8 formatting changes	2016-05-11 11:32:08 -05:00
Adam J. Stewart	8ea5e946a2	Add Allinea packages	2016-05-11 11:32:08 -05:00
Adam J. Stewart	8bcb812529	Allow multiple license symlinks	2016-05-11 11:32:08 -05:00
Adam J. Stewart	6906911e85	Allow license files to use different symbols for comments	2016-05-11 11:32:08 -05:00
Adam J. Stewart	240c0643f2	Add NAG Fortran compiler package	2016-05-11 11:27:11 -05:00
Adam J. Stewart	82ce798f41	Bug fix	2016-05-11 11:27:11 -05:00
Adam J. Stewart	2fb128fb34	Add PGI Compiler Package	2016-05-11 11:27:11 -05:00
Denis Davydov	eba264fcd0	fix formatting	2016-05-11 16:11:34 +02:00
Denis Davydov	361b629034	openblas: make unit test more robust by outputing only the solution vector from dgesv	2016-05-11 15:10:13 +02:00
Denis Davydov	809ded74c9	add functions for simple unit tests; refactor openblas to use them	2016-05-11 15:10:13 +02:00
Todd Gamblin	9030541e4b	Merge pull request #929 from epfl-scitas/differentiate_framework_from_packages QA : make qa checking less painful	2016-05-11 02:26:07 -07:00
Todd Gamblin	d7847ff768	Use just one flake8 file; mark package.py files to avoid E501 w/url.	2016-05-11 01:16:41 -07:00
alalazo	7d74e209f3	qa : this should still fail due to F821	2016-05-10 19:20:26 +02:00
Todd Gamblin	3e717842c9	Merge pull request #924 from hegner/feature/python-diverse Add a few more python packages	2016-05-10 09:44:32 -07:00
Todd Gamblin	836d081bca	Merge pull request #927 from davydden/astyle_fix_ubuntu astyle: compile with spack_cxx	2016-05-10 09:43:44 -07:00
alalazo	979b53cab6	qa : modifying 2 packages and a framework file just for the sake of it	2016-05-10 18:33:07 +02:00
Tom Scogland	8fec824484	Merge pull request #769 from epfl-scitas/openmpi_variants openmpi : added variants	2016-05-10 09:02:33 -07:00
Denis Davydov	c8d8860742	astyle: fix formatting	2016-05-10 18:01:19 +02:00
Benedikt Hegner	fa44cd5cef	renaming py-Genshi into py-genshi	2016-05-10 17:30:44 +02:00
Benedikt Hegner	f5fb771573	fixing imports; configure commands aren't available at import time yet	2016-05-10 14:52:14 +02:00
Denis Davydov	cd9cdd6410	astyle: compile with spack_cxx	2016-05-10 13:37:57 +02:00
Benedikt Hegner	ad42579f08	addressing coding style rules	2016-05-10 13:17:36 +02:00
Benedikt Hegner	aca5941a0e	Add a few more python packages py-Genshi py-astroid py-jinja2 py-logilab-common py-markupsafe py-mistune py-prettytable py-py2neo py-storm	2016-05-10 11:48:18 +02:00
Todd Gamblin	35cf52d182	Merge pull request #707 from dhandeo/visit VisIt v2.10.1	2016-05-10 01:40:27 -07:00
Todd Gamblin	a1ebdf63f3	Merge pull request #812 from eschnett/eschnett/hdf5-check-install Check the installed HDF5 library for consistency	2016-05-10 01:34:10 -07:00
Todd Gamblin	6c46a5d623	Merge pull request #807 from gartung/fftw-openmp FFTW: openmp needs to be an option for clang build	2016-05-10 01:33:13 -07:00
Todd Gamblin	2a38ec4c93	Merge pull request #788 from citibeth/efischer/140416-UpdatePNetCDF parallel-netcdf: Updated package	2016-05-10 01:31:57 -07:00
Todd Gamblin	57e495943f	Merge pull request #757 from glennpj/extend_r Make R extendable	2016-05-10 01:30:13 -07:00
Todd Gamblin	b1da3664ec	Merge pull request #795 from adamjstewart/features/argcomplete Add argcomplete python package	2016-05-10 01:29:08 -07:00
Todd Gamblin	87c772b117	Merge pull request #845 from davydden/openblas_cleanup_unit_test openblas: fix a bug and cleanup the unit test	2016-05-10 01:28:49 -07:00
Todd Gamblin	ccccd7b60d	Merge pull request #806 from davydden/openblas_openmp_clang openblas: do not use OpenMP with Clang	2016-05-10 01:28:12 -07:00
Todd Gamblin	f21fcb3b88	Merge pull request #798 from jgalarowicz/osscbtf-changes Update the main Krell Institute and Argo Navis Tech. packages for MPI…	2016-05-10 01:26:48 -07:00
Todd Gamblin	d2004a186c	Merge pull request #825 from xjrc/packages/scotch Update Package : Scotch	2016-05-10 01:26:21 -07:00
Todd Gamblin	0f427ed334	Tweak nccmp to be more spack-compatible. - Spack doesn't set F90, but it confuses the nccmp build. Just remove it from the environment. - TODO: should build environment unset this variable?	2016-05-10 01:07:34 -07:00
Todd Gamblin	1cc94a0f79	Merge branch 'efischer/160425-nccmp' of git://github.com/citibeth/spack into citibeth-efischer/160425-nccmp	2016-05-10 01:04:46 -07:00
Todd Gamblin	1568e64f95	Merge pull request #862 from davydden/glib_libxcb_missing_dependencies Glib libxcb missing dependencies	2016-05-10 00:57:27 -07:00
Todd Gamblin	5e471719a6	Merge pull request #907 from eschnett/eschnett/binutils-werror Disable -Werror	2016-05-10 00:54:24 -07:00
Todd Gamblin	2fde72075f	Merge pull request #918 from hegner/bugfix/bison Add missing m4 dependency to bison	2016-05-10 00:54:04 -07:00
Todd Gamblin	e672e10219	Merge pull request #912 from citibeth/efischer/160506-NCO nco: Added new package	2016-05-10 00:53:51 -07:00
Todd Gamblin	a996b8aa7f	Merge pull request #919 from jppelteret/bugfix/gmsh-2 GMsh: Fix binary linking against its own libraries	2016-05-10 00:53:22 -07:00
Todd Gamblin	813fefbc71	Merge pull request #922 from bcouturi/gdbupdate Added gdb 7.11 released on 24 Feb 2016	2016-05-10 00:53:00 -07:00
Todd Gamblin	e3115aa505	Kripke variants.	2016-05-10 00:31:06 -07:00
alalazo	474048ae8b	openmpi : fixes #920 , added sqlite as a dependency The default for the variant `pmi` has been set to `False` `sqlite` is now a dependency if `+sqlite3`	2016-05-10 09:02:16 +02:00
alalazo	405b04efab	Merge branch 'develop' of https://github.com/LLNL/spack into openmpi_variants	2016-05-10 08:40:26 +02:00
Denis Davydov	b063ab42bf	openblas: fix and cleanup the unit test	2016-05-10 07:33:57 +02:00
Todd Gamblin	2e0ee5404d	clean up Kripke package and dependencies.	2016-05-09 17:14:25 -07:00
Todd Gamblin	92b7534885	Merge branch 'features/kripke' of git://github.com/tzislam/spack into tzislam-features/kripke	2016-05-09 17:00:47 -07:00
Tanzima Z. Islam	23ec6c6bb0	Removed FIXME comments	2016-05-09 16:34:27 -07:00
Tanzima Z. Islam	045e5bd458	Adding a new package: Kripke from the public tar ball	2016-05-09 16:22:07 -07:00
Joseph Ciurej	ceab445b9f	Integrated improvements from PR #893 to remove hardcoded MPI path.	2016-05-09 14:39:42 -07:00
Joseph Ciurej	88d2f6b83a	Enabled the '+esmumps' variant for 'scotch@:6.0.0'. Added support for 'scotch@6.0.0'.	2016-05-09 14:19:42 -07:00
Joseph Ciurej	7e6be184bc	Updated and fixed the Scotch package. - Fixed a bug that was causing shared library usage to fail when linking with another application. - Updated the repository URL to allow for more general version downloading. - Added installation support for version 5.1.10b. - Cleaned up the installation file to make it a bit easier to follow and modify.	2016-05-09 14:19:42 -07:00
Ben Couturier	3948b082ad	Added gdb 7.11	2016-05-09 22:32:46 +02:00
Jean-Paul Pelteret	970196d825	GMsh: Fix binary linking against its own libraries GMsh binary now links against full path name of libraries. This fixes problems, such as `dyld: Library not loaded: libGmsh.2.11.dylib`, when running the executable.	2016-05-09 14:23:07 +02:00
Benedikt Hegner	6e07f46df8	add missing m4 dependency to bison	2016-05-09 14:02:41 +02:00
alalazo	3d7684277a	Merge branch 'openmpi_variants' of github.com:epfl-scitas/spack into openmpi_variants Conflicts: var/spack/repos/builtin/packages/openmpi/package.py	2016-05-09 10:56:26 +02:00
alalazo	497ed9f933	Merge branch 'develop' of https://github.com/LLNL/spack into openmpi_variants Conflicts: var/spack/repos/builtin/packages/openmpi/package.py	2016-05-09 08:23:30 +02:00
Todd Gamblin	ea408cc0d0	Merge pull request #911 from castillo23/packages/crypto add support for crypto version 5.6.1	2016-05-08 14:40:21 -07:00
Todd Gamblin	7145b72482	Merge pull request #914 from trws/packages-leading-to-neovim pile of dependencies for neovim, including luajit and libuv	2016-05-08 14:37:51 -07:00
Todd Gamblin	bd63545b0c	Merge pull request #913 from trws/mpi-should-have-pmi add pmi support and process managers to the MPIs	2016-05-08 14:36:38 -07:00
Jean-Paul Pelteret	95c7f4fba3	Fixes #915	2016-05-08 16:53:31 +02:00
Denis Davydov	72b91758c9	openblas: raise an error when using +openmp with clang; set +openmp to false by default	2016-05-08 16:51:06 +02:00
Massimiliano Culpo	7d5bb088b4	Merge branch 'develop' of https://github.com/LLNL/spack into openmpi_variants Conflicts: var/spack/repos/builtin/packages/openmpi/package.py	2016-05-07 15:08:27 +02:00
Tom Scogland	22afc6dadd	pile of dependencies for neovim, including luajit and libuv	2016-05-06 15:33:26 -07:00
Tom Scogland	7ec28231d9	Merge pull request #906 from adamjstewart/features/xerces-c Remove FIXME comments	2016-05-06 15:30:09 -07:00
Tom Scogland	1de110fbba	Merge pull request #794 from adamjstewart/features/jpeg Add latest jpeg version	2016-05-06 15:20:43 -07:00
Tom Scogland	7dbf6f97f6	Merge pull request #841 from eschnett/eschnett/hwloc Update hwloc to 1.11.3	2016-05-06 15:19:16 -07:00
Tom Scogland	1cf2526a79	Merge pull request #865 from davydden/silver_searcher_dependencies the_silver_searcher: add missing dependency	2016-05-06 15:18:50 -07:00
Tom Scogland	86449790fe	add pmi support and process managers to the MPIs	2016-05-06 15:15:40 -07:00
Elizabeth Fischer	c82db2116b	nco: Added new package	2016-05-06 17:42:42 -04:00
Cecilia W. Castillo	7bf724b1d3	add support for crypto version 5.6.1	2016-05-06 14:14:13 -07:00
Tanzima Z. Islam	9f212e7201	Adding a new package file for Kripke	2016-05-06 13:50:34 -07:00
Erik Schnetter	db80c5e97e	Disable -Werror This leads to problems if new compiler versions report new kinds of warnings.	2016-05-05 21:11:54 -04:00
Gregory Becker	11b62114bb	versioning the database	2016-05-05 16:58:00 -07:00
Gregory Becker	44f089508b	Changed other packages to fit new syntax	2016-05-05 15:40:22 -07:00
Gregory Becker	d45b2c7947	Fixed openssl to work with new syntax	2016-05-05 15:36:48 -07:00
Adam J. Stewart	1203a14563	Remove tutorial comments	2016-05-05 14:01:21 -05:00
Todd Gamblin	9fb1a9537d	Merge branch 'develop' into features/cflags	2016-05-05 10:49:15 -07:00
Robert D. French	18d2b28c49	Build and install BBCP Build and install BBCP Use correct destination for install	2016-05-05 10:58:24 -04:00
Todd Gamblin	10b0cb108c	Merge pull request #893 from davydden/mpi_dependent_env Introduce variables for MPI compiler wrappers and document their usage	2016-05-05 01:40:11 -07:00
Denis Davydov	c3bc4d6195	mpich: remove module.mpicc as no formula is using it and it is a duplicate of self.spec.mpicc	2016-05-05 10:28:04 +02:00
Denis Davydov	b12fb7ebc8	mpi: move mpicc/mpicxx/mpifc/mpif77 to setup_dependent_package()	2016-05-05 10:24:32 +02:00
Todd Gamblin	56557f7ff6	Merge pull request #871 from davydden/dealii_updated_dependencies dealii: add new dependency -- gsl	2016-05-05 01:00:55 -07:00
Todd Gamblin	4ee1bca1d9	Merge pull request #881 from KineticTheory/pkg-superlu-dist + Add version 5.0 download for SuperLU_DIST.	2016-05-05 00:57:24 -07:00
Todd Gamblin	c6a7af3fa7	Merge pull request #885 from davydden/p4est_test_option p4est: put back +tests variant	2016-05-05 00:53:58 -07:00
Todd Gamblin	d00680a883	Merge pull request #886 from eschnett/eschnett/openblas-make Disable OpenBLAS's overriding of our "make -jN" option	2016-05-05 00:53:47 -07:00
Todd Gamblin	c7f23ca0d6	Merge pull request #887 from adamjstewart/features/openmpi Re-add hwloc as a dependency of openmpi	2016-05-05 00:53:10 -07:00
Todd Gamblin	d0acc9827a	Merge pull request #884 from davydden/libtool_missing_dependency libtool: add a missing dependency	2016-05-05 00:52:39 -07:00
Todd Gamblin	c1010c3422	Merge pull request #889 from adamjstewart/features/netcdf Remove hdf5 ~cxx constraint on netcdf	2016-05-05 00:51:49 -07:00
Todd Gamblin	1181ad2bf0	Merge pull request #891 from adamjstewart/features/gcc Add latest version of GCC	2016-05-05 00:51:05 -07:00
Todd Gamblin	053e687e79	Merge pull request #800 from eschnett/eschnett/qthreads Add some qthreads patches	2016-05-05 00:49:32 -07:00
Todd Gamblin	7ac8ddde96	Merge pull request #897 from robertdfrench/https-urls-for-subversion Build Subversion with HTTP/S support	2016-05-05 00:20:59 -07:00
Todd Gamblin	3dd5b2845b	Merge pull request #900 from eschnett/eschnett/flex Update Flex to 2.6.0	2016-05-05 00:11:50 -07:00
Todd Gamblin	55f1cafb70	Merge pull request #899 from LLNL/bugfix/github-808-mrnet added git commit for clang support	2016-05-05 00:11:19 -07:00
Dhanannjay 'Djay' Deo	ef202fbe0c	Build static and shared libraries for silo	2016-05-04 22:50:15 -04:00
Dhanannjay 'Djay' Deo	45e77e7739	Correctly extend std_cmake_args	2016-05-04 22:49:47 -04:00
Dhanannjay 'Djay' Deo	1785de0f31	remove hdf5 which is silo actually a silo dependency	2016-05-04 22:08:01 -04:00
Erik Schnetter	27de2a42d9	Update Flex to 2.6.0	2016-05-04 20:27:58 -04:00
Greg Lee	514a8c737a	added git commit for clang support	2016-05-04 16:38:43 -07:00
Dhanannjay 'Djay' Deo	32f7b06a36	Add version 2.10.2	2016-05-04 18:14:38 -04:00
Patrick Gartung	67d64b804f	more succinctly	2016-05-04 23:53:10 +02:00
Robert.French	bfe009f98d	Subversion uses serf for http repos Add Scons package Add serf package Subversion uses serf for http repos	2016-05-04 16:16:36 +00:00
Denis Davydov	796bf5f85c	mvapich2: add self.spec.[mpicc\|mpicxx\|mpifc\|mpif77]	2016-05-04 17:33:19 +02:00
Patrick Gartung	7eb463a66e	only fail when it is apples clang	2016-05-04 15:05:56 +02:00
Denis Davydov	f417b1cf90	p4est: use mpicc,mpicxx,mpifc,mpif77 compiler variables instead of hardcoding names	2016-05-04 11:51:45 +02:00
Denis Davydov	c3317819cb	mpi: add self.spec.[mpicc\|mpicxx\|mpifc\|mpif77] to avoid hardcoding MPI wrappers names	2016-05-04 10:37:52 +02:00
Adam J. Stewart	88fa9084e2	Add latest version of GCC	2016-05-03 15:58:14 -05:00
Adam J. Stewart	a3d2d0cd22	Add latest OpenSSL versions	2016-05-03 15:44:23 -05:00
Adam J. Stewart	eaa45d8a9a	Remove hdf5 ~cxx constraint on netcdf	2016-05-03 13:28:38 -05:00
Kelly (KT) Thompson	f4260da1c2	Mark SuperLU_DIST version 4.3 as the preferred version since petsc and trilinos are not tested with 5.0.	2016-05-03 12:05:35 -06:00
Adam J. Stewart	51c6867f72	Re-add hwloc as a dependency of openmpi	2016-05-03 10:30:35 -05:00
Erik Schnetter	40d578be95	Disable OpenBLAS's overriding of our "make -jN" option	2016-05-03 10:38:05 -04:00
Denis Davydov	0583bc9859	p4est: put back +tests variant	2016-05-03 16:21:10 +02:00
Denis Davydov	98f8192bde	libtool: add a missing dependency	2016-05-03 15:15:55 +02:00
Kelly (KT) Thompson	89621faaea	+ Add version 5.0 download for SuperLU_DIST.	2016-05-02 20:21:03 -06:00
David Poliakoff	e74cc0df27	Updated docstring	2016-05-02 15:53:43 -07:00
David Poliakoff	afef04bb54	Added cnmem package`	2016-05-02 15:49:37 -07:00
David Poliakoff	179d308fe0	Added a package for the RAJA system	2016-05-02 14:32:57 -07:00
Todd Gamblin	372a455bea	Merge pull request #873 from jppelteret/bugfix/paradiseo Add extra dependencies for Paradiseo	2016-05-02 09:57:30 -07:00
Todd Gamblin	aa7444cd3d	Merge pull request #870 from jppelteret/bugfix/glm Add missing dependency for glm	2016-05-02 09:57:11 -07:00
Todd Gamblin	4fecf33416	Merge pull request #877 from vishalkenchan/develop bugfix: missing dependencies (m4) added for netcdf and autoconf	2016-05-02 09:56:44 -07:00
Denis Davydov	2eb4248f90	dealii: fix a bug where P4EST_DIR was unconditionally requested	2016-05-02 18:53:13 +02:00
Denis Davydov	cde1d18399	dealii: add new dependency -- gsl	2016-05-02 18:53:13 +02:00
Todd Gamblin	999dda8f83	Merge pull request #708 from adamjstewart/fixes/qt Prevent use of system GTK+	2016-05-02 09:41:51 -07:00
Todd Gamblin	568800c045	Merge pull request #875 from jppelteret/features/adol-c Added Adol-C package	2016-05-02 09:30:23 -07:00
Adam J. Stewart	7255f6969b	Merge branch 'develop' into features/argcomplete	2016-05-02 11:29:52 -05:00

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2815 commits