Commit graph

2815 commits

Author SHA1 Message Date
Kim Serradell
70a4c4e105 Bug fontconfig (#2652)
* Added uuid: OSSP uuid is a ISO-C:1999 application programming interface

* Fixed install error in cmor package

* Added uuid: OSSP uuid is a ISO-C:1999 application programming interface

* Fixed install error in cmor package

* Modifiying fontconfig file to allow install in OpenSuse 13.2

* Adding pkg-config dependency to freetype and libxml2

* Removed first possible solution. With @adamjstewart selecting the one adding pkg-config to dependencies
2016-12-21 14:27:15 -08:00
Federico Padua
60dc751225 Fix homepage for the package libspatialindex (#2656)
Small fix for the homepage of the package libspatialindex.
2016-12-21 14:23:32 -08:00
Michael Kuhn
3ce3165ae6 Update gdal to 2.1.2 (#2643) 2016-12-19 17:06:57 -08:00
Adam J. Stewart
b3ba45afa9 Various improvements to H5hut (#2636) 2016-12-19 17:06:14 -08:00
Andrey Prokopenko
d306893d83 moab: changed trilinos dependency to zoltan, and added fortran variant (#2582)
Trilinos dependency is very heavy, the zoltan one is light. I'm not sure
if there is a situation where one needs the former.
2016-12-19 14:41:09 -08:00
Adam J. Stewart
d24186ea84 Update PnetCDF to AutotoolsPackage (#2637) 2016-12-19 14:26:47 -08:00
George Hartzell
d8efeabf77 Update digest for vim@8.0 tarball. (#2600)
* Update digest for vim@8.0 tarball.

The digest appears to have changed.

The new digest value matches the value in their
[MD5SUMS](ftp://ftp.vim.org/pub/vim/unix/MD5SUMS)
file.

* Change ftp.vim.org -> github.com/vim/vim/archive

Vim seems to do weekly releases, but the name of the tarball on
ftp.vim.org doesn't change so we have to regularly play 'update the
digest' (aka Internet whack-a-mole).

This commit changes the url so that we are now downloading particular
versions from the Vim project's github archive.

I didn't walk back through of time to get all of the versions that
used to be explicit.  I grabbed the final `7.4` and the current `8.0`
releases.  If people need more we can add them.
2016-12-19 14:26:16 -08:00
Adam J. Stewart
46436a0909 GSL: Add latest version, update to AutotoolsPackage (#2630) 2016-12-19 09:21:38 -08:00
Adam J. Stewart
08d323b1f8 NCO: Add latest version, update to AutotoolsPackage (#2629) 2016-12-19 08:49:37 -08:00
Todd Gamblin
b18738e03d Add gawk (GNU awk) (#2625)
* Add gawk, GNU awk.

* flake8 fix.
2016-12-18 22:35:23 -08:00
George Hartzell
6e1b3f621d Feature/add package for fastqc (#1573)
* Add package for fastqc

This tool is a java mess.  Their Way To Do It is to just copy the entire
tree into it's final resting place, make the perl script at the top
level executable and take it from there.

Yuck.

This package assumes that `set_executable` actually sets all the user
bits.  If that change doesn't go in, then something equivalent needs to
be done.

* Use chmod to make fastqc executable

I haven't gotten any feedback on changing set-executable, so switch to
using chmod (from the cuda package).

* Flake8 cleanup

* Install files neatly, don't just copy top level of dir

Rather than blindly copying everything in the distribution, carefully
put the necessary bits into reasonable places.  Neatness counts, etc...

This requires patching the `fastqc` perl script, so this commit adds a
patch file.

* Additional pep8 cleanup

* Let dependency handle adding jdk to PATH

* Flake8 cleanup

* Ensure that java is on PATH

I thought that the run dependency on the jdk would put
java on my PATH, but it does not appear to work.

For now, do it by hand.
2016-12-18 16:38:14 -08:00
Alfredo Adolfo Gimenez
68e9a2ed8d Added customization for make targets in 'build' and 'install' phases for AutotoolsPackage (#2464)
* Customization for make targets in build and test phases for AutotoolsPackage

* Updated Blitz++ to use customized make build and test targets

* Removed flake8 error

* Removed make test customization, added make install customization, need to figure out issues with multiple make targets

* Changed build_targets and install_targets to normal attributes
2016-12-18 16:27:47 -08:00
Chris MacMackin
0de7b5504e py-markdown: Add new package for python-markdown. (#2611)
* py-markdown: Add new package for python-markdown.

* py-markdown: Added restrictions on Python version.

* py-markdown: Removed upper-limit on compatible Python versions.

* py-markdown: Reinstated upper bound on Python version. Also fixed small formatting error.
2016-12-18 16:23:31 -08:00
Denis Davydov
1c0f28c559 gmsh: add 2.15.0 and switch to CMakePackage (#2620) 2016-12-18 16:20:37 -08:00
Denis Davydov
da2350a1c9 tbb: add 2017.3 (#2619) 2016-12-18 16:20:26 -08:00
Denis Davydov
aeb58dc2de cmake: add 3.7.1 (#2618) 2016-12-18 16:20:13 -08:00
Gregory Lee
592df25aef build fixes for openblas (#2601)
* build fixes for openblas

* avx2 in openblas nnot supported with older gcc

* merge fix for openblas
2016-12-17 17:04:59 -08:00
Denis Davydov
0ef55b831f dealii: fix config for Netcdf with lib64 (#2616) 2016-12-17 08:57:33 -08:00
Chris MacMackin
a1a41bb4c7 graphviz: fixed build error due to specifying ltdl lib but not include. (#2609)
* graphviz: fixed build error due to specifying ltdl lib but not include.

* graphviz: Fixed dependencies on libtool and expat.
2016-12-16 16:22:13 -08:00
Andrey Prokopenko
394f010952 libmesh: added mpi variant (#2584) 2016-12-16 15:39:55 -08:00
Thierry
5f88bea442 init nfft 3.3.2 package file (#2612)
* init nfft 3.3.2 package file

* shorten comment line
2016-12-16 15:36:34 -08:00
Chris MacMackin
3089d118c1 py-beautifulsoup4: Added version 4.5.1 (#2610) 2016-12-16 14:21:26 -08:00
Jon Rood
d7ff4b8f34 Updating Trilinos with superlu variant and fixing git branch version options. (#2604) 2016-12-16 14:14:50 -08:00
Adam J. Stewart
36072c4776 [HACK] Make concretization great again! (#2590)
* Always default to +mpi

* Always default to ~X
2016-12-16 10:49:02 -08:00
Massimiliano Culpo
87c9b01033 openblas: derives from MakefilePackage (#2488)
* MakefilePackage: changed build_args and install_args for consistency with #2464
openblas: derives from MakefilePackage

* MakefilePackage: changed default edit behavior
2016-12-15 10:15:52 -08:00
Massimiliano Culpo
f9ca5b9f27 go: see #2567, temporary fix (#2588) 2016-12-15 09:12:33 -08:00
Todd Gamblin
6971918c27 Add GNU patch to Spack. (#2598) 2016-12-15 01:35:45 -08:00
Jean-Paul Pelteret
8816cdea9e Blacklist flex 2.6.2 by commenting out package version (#2571)
Fixes #2554
2016-12-14 14:34:55 -08:00
George Hartzell
f487102c0c Update texlive digest (#2591)
Texlive is *live*, they update the contents of their tarball on a whim.

Here's the current one.
2016-12-14 11:55:48 -08:00
Kim Serradell
c02de564e4 New package py-cdo (#2569)
* Add python cdo support

* Correct pypi url

* Corrected a blanck space that was failing CI

* Corrected url that was failing CI

* Following @alalazo indications, Write this line wrapping it around 80 chars to pass Travis

* Added cdo package depency
2016-12-13 14:36:06 -08:00
Gregory Lee
392ed4f0cc Merge pull request #2506 from skosukhin/pr_python
A couple of updates for python package.
2016-12-13 13:56:15 -08:00
amklinv
f613445eb2 Added support for xSDKTrilinos package (#2201)
* Added support for xSDKTrilinos package

* Updated xsdktrilinos/package.py for PR review

* Added trilinos version # reqs to xsdktrilinos

* xsdktrilinos now uses CMakePackage

* Cleaned up xsdktrilinos/package.py

* Removed unused cxxflags from xsdktrilinos

* Removed unused sys import from xsdktrilinos
2016-12-13 11:50:10 -08:00
Denis Davydov
d855403546 likwid: remote root from INSTALL_CHOWN (#2564) 2016-12-13 10:46:31 -08:00
Denis Davydov
fab9af7081 slepc/petsc: fix python dependency (#2560) 2016-12-13 01:32:42 -08:00
Sergey Kosukhin
d8c4418952 Updated python: refactoring and warning messages. 2016-12-13 08:36:56 +01:00
Sergey Kosukhin
3ba88a7509 Updated python: pass LDSHARED to dependants' setup scripts. 2016-12-13 08:36:56 +01:00
Sergey Kosukhin
ec855df071 Updated python: account for lib64 when filtering compilers. 2016-12-13 08:36:56 +01:00
Sergey Kosukhin
58cb2cc2af Updated python: reformat code. 2016-12-13 08:36:56 +01:00
Adam J. Stewart
9f71382912 Add missing bzip2 dependency to freetype (#2536)
* Add freetype dependency on bzip2

* Switch package with an install method for the docs
2016-12-12 14:20:36 -08:00
Jean-Paul Pelteret
6698650679 Doxygen: Add new version (#2561) 2016-12-12 13:45:29 -08:00
Denis Davydov
eb645a8e46 p4est: remove unneded lua dependency (#2559) 2016-12-12 09:51:58 -08:00
Javier
641db8b9bd New package - r-xgboost (#2493) 2016-12-11 11:49:33 -08:00
Denis Davydov
c8a89d84b5 atlas: fix lapack stage path (#2371)
* atlas: fix lapack stage path

* atlas: add a few links to other package managers
2016-12-11 11:48:23 -08:00
Denis Davydov
d8fd5835b6 rename: add new package (#2486) 2016-12-11 11:44:30 -08:00
Denis Davydov
62dedc80b1 likwid: add todo (#2531)
* likwid: add todo

* liwkid: add a note on hwloc dependency
2016-12-11 11:39:56 -08:00
Denis Davydov
6475937fc2 numdiff: fix dependency type on macOS (#2538) 2016-12-11 11:38:40 -08:00
Sergey Kosukhin
42dbd4f855 Updated cmor: corrected way to set constraints for the extendee. (#2543) 2016-12-11 11:37:00 -08:00
Jean-Paul Pelteret
70f1e92951 Update Adol-C package (#2556)
Rename developer version, add new version, and make patch version
specific.
2016-12-11 11:35:57 -08:00
Denis Davydov
1570f90fde clang: do xcode mockup iff requested by a package (#2544)
* clang: do xcode mockup iff requested by a package

* add a note

* add pkg to setup_custom_environment() and decide whether or not to use mockup XCode there based on the package
2016-12-10 16:23:39 -08:00
Stephen McDowell
b03881d1bb Eigen 3.3.1 is latest stable version. (#2551)
Main page states [3.3.1 is latest stable](http://eigen.tuxfamily.org/index.php?title=Main_Page).
2016-12-10 16:23:20 -08:00