Glenn Johnson
e0549f5e88
ncbi-rmblastn: add v2.11.0 ( #22788 )
2021-04-22 05:20:51 +02:00
Jen Herting
5bec197de1
New package: r-assertive-files ( #23183 )
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Co-authored-by: Alex Leute <acl2809@rit.edu>
Co-authored-by: Alex C Leute <aclrc@rit.edu>
2021-04-21 17:24:22 -05:00
Jen Herting
ae045ac071
New package: r-assertive-matrices ( #23184 )
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Co-authored-by: Alex Leute <acl2809@rit.edu>
Co-authored-by: Alex C Leute <aclrc@rit.edu>
2021-04-21 17:20:36 -05:00
Jen Herting
da520d7bb3
New package: r-assertive-datetimes ( #23180 )
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Co-authored-by: Alex Leute <acl2809@rit.edu>
Co-authored-by: Alex C Leute <aclrc@rit.edu>
2021-04-21 17:18:45 -05:00
Harmen Stoppels
730fbae463
Disable multithreaded version of zstd by default ( #23167 )
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* Disable multithreaded version of zstd by default
* zstd pthreads by default again! but configurable, and turned off in GCC
2021-04-21 22:17:08 +02:00
Jen Herting
ee76c329f8
New package: r-assertive-numbers ( #23181 )
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Co-authored-by: Alex C Leute <aclrc@rit.edu>
2021-04-21 19:30:31 +00:00
Sergei Shudler
75fd886f62
MAGMA: Add e4s testsuite-inspired smoke test ( #23011 )
2021-04-21 11:12:59 -07:00
Massimiliano Culpo
d670f3aa40
lbann: remove deprecated variants in opencv ( #23176 )
2021-04-21 17:28:33 +00:00
Cameron Stanavige
0ea1b9705f
axl: add version 0.4.0 ( #23044 )
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* Swap .zip downloads with .tar.gz downloads (and update download
hashes)
* New variants: intel_cppr and bbapi_fallback support
2021-04-21 10:24:30 -07:00
Cameron Stanavige
44d995b6d5
unifyfs: add version 0.9.2 ( #22390 )
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UnifyFS has been integrated with updated versions of its mochi-margo
dependency (and mochi-margo's mercury and libfabric dependencies).
This removes support for version 0.9.0
2021-04-21 10:20:41 -07:00
Harmen Stoppels
febeca2b05
Fix GCC with zstd on CCentOS 7 where it doesn't consider the lib64 directory ( #23169 )
2021-04-21 10:25:14 -06:00
Cyrus Harrison
a97ef832d9
conduit package: avoid issue with subclass case ( #23156 )
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* avoid issue with subclass case
* catch named exception
2021-04-21 10:21:21 -05:00
Adam J. Stewart
8182994cee
OpenCV: overhaul package ( #22340 )
2021-04-21 03:01:04 -06:00
Massimiliano Culpo
3325eff486
ASP-based solve: minimize compiler mismatches ( #23016 )
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fixes #22718
Instead of trying to maximize the number of
matches (preferred behavior), try to minimize
the number of mismatches (unwanted behavior).
2021-04-21 01:02:43 -07:00
Massimiliano Culpo
9a473d6ab3
ASP-based solver: suppress warnings when constructing facts ( #23090 )
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fixes #22786
Trying to get optimization flags for a specific target from
a compiler may trigger warnings. In the context of constructing
facts for the ASP-based solver we don't want to show these
warnings to the user, so here we simply ignore them.
2021-04-21 01:02:10 -07:00
Brian Van Essen
4ee3934fb3
lbann: requirements of the new variants for the legacy versions ( #23159 )
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Fixed the range of conduit for legacy versions of LBANN.
2021-04-20 18:33:05 -07:00
Chris White
58a897be0e
check for package in spec not variant ( #23157 )
2021-04-20 18:13:15 -06:00
Glenn Johnson
09e80604f5
Catch rstudio based URL for cran attribute in create.py ( #23072 )
2021-04-20 19:03:42 -05:00
Brian Van Essen
fd9918ab6f
Removed unnecessary code to put cuda_arch in DiHydrogen ( #23158 )
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These were deprecated when the custom cuda_arch list was
removed. Also fixed up the Aluminum dependencies for Hydrogen and
DiHydrogen. Turns out that Aluminum v0.6.0 didn't have a correct
version in CMake and thus the interaction with older versions of
Hydrogen and DiHydrogen needed to be corrected.
2021-04-20 16:54:12 -07:00
Mansour Moufid
73d1c0911c
libsigsegv: update to version 2.13. ( #23155 )
2021-04-20 22:39:10 +00:00
Vanessasaurus
b9a2b1c096
Fixing typo tty.fail -> tty.die and monitor docstrings ( #23152 )
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This isn't a significant issue, but I noticed that the docstring incorrectly references "tty.fail" and I wanted to quickly fix it to reflect the correct command, tty.die. I also wanted to fix the docstrings to not be large clumps, to what @tgamblin suggested after I wrote this - having one line at the top that is a quick summary, and more verbose after that.
2021-04-20 14:53:30 -07:00
Ethan Stam
293c8bf621
Use xz instead of lzma. XZ utils provides lzma dev files ( #23144 )
2021-04-20 15:39:47 -04:00
Cameron Stanavige
5931995364
redset: add versions 0.0.5 and 0.0.4 ( #22977 )
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Also update the url and hash of v0.0.3.
2021-04-20 12:04:58 -07:00
Cameron Stanavige
f4d8382a4f
shuffile: add version 0.0.4 ( #22976 )
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Also update the url and hash for v0.0.3.
2021-04-20 12:03:58 -07:00
KoyamaSohei
fa06dbb324
New package: pmemkv
2021-04-20 11:52:36 -07:00
Sinan
d0dcde7c69
Package libsecret: turn off gobj variant by default ( #23070 )
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Co-authored-by: sbulut <sbulut@3vgeomatics.com>
2021-04-20 11:49:05 -07:00
miheer vaidya
58789130a8
emacs package: add version @master ( #23075 )
2021-04-20 11:37:38 -07:00
Shintaro Iwasaki
a42c11ff0b
argobots: support new variants ( #23133 )
2021-04-20 18:23:30 +00:00
iarspider
0fec636bf4
oracle-instant-client package: add dependency on libaio ( #23080 )
2021-04-20 11:22:51 -07:00
Massimiliano Culpo
750fa8d810
etsf-io: added missing mpi variant ( #23083 )
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The variant was mentioned in a depends_on directive,
but never declared
2021-04-20 11:21:30 -07:00
Massimiliano Culpo
67afe7016f
angsd: fix typo in variants ( #23081 )
2021-04-20 11:20:23 -07:00
Massimiliano Culpo
7dc9a0082b
geopm: remove reference to nonexistent variant ( #23084 )
2021-04-20 11:19:29 -07:00
Glenn Johnson
afd69866d1
New package: r-mcmcpack ( #23139 )
2021-04-20 11:17:49 -07:00
Glenn Johnson
25a9a40a12
New package: r-missmethyl ( #23140 )
2021-04-20 11:16:59 -07:00
Glenn Johnson
639d66720f
New package: r-projpred ( #23141 )
2021-04-20 11:15:40 -07:00
Massimiliano Culpo
8058aecd2a
lammps: fix typo in variant name ( #23085 )
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In two conflicts we used +adios instead of +user-adios
2021-04-20 11:55:29 -06:00
Brian Van Essen
5461411f21
Set the minimum version of NCCL for aluminum ( #23135 )
2021-04-20 09:49:13 -07:00
Glenn Johnson
7925705d1d
r-experimenthub: new package ( #23095 )
2021-04-20 10:31:11 -06:00
Ryan Marcellino
f1d66b767d
add py-setuptools dependency ( #23120 )
2021-04-20 11:13:42 -05:00
Tom Payerle
0c0fa26b4c
New package: py-pymumps ( #19526 )
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* New package: py-pymumps
Python bindings for MUMPS, a parallel sparse direct solver
* py-pymumps: fixing flake issues
* py-pymumps: fix dependency types
Following suggestion of @adamjstewart
* Update var/spack/repos/builtin/packages/py-pymumps/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Update var/spack/repos/builtin/packages/py-pymumps/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Update var/spack/repos/builtin/packages/py-pymumps/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Update var/spack/repos/builtin/packages/py-pymumps/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Update var/spack/repos/builtin/packages/py-pymumps/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Update var/spack/repos/builtin/packages/py-pymumps/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2021-04-20 11:12:13 -05:00
Matthieu Dorier
448ac2c68d
json-c: added two versions and converted to cmake package ( #23129 )
2021-04-20 14:05:06 +02:00
Glenn Johnson
c10944e8fd
r-bayesplot: new package ( #23091 )
2021-04-20 11:36:48 +02:00
Glenn Johnson
e005250555
r-illuminahumanmethylation450kmanifest: new package ( #23100 )
2021-04-20 03:36:32 -06:00
Glenn Johnson
89838bae1d
r-champdata: new package ( #23093 )
2021-04-20 11:36:08 +02:00
Glenn Johnson
7b54389e12
r-compquadform: new package ( #23094 )
2021-04-20 11:35:47 +02:00
Glenn Johnson
5a3a014aae
r-illumina450probevariants-db: new package ( #23099 )
2021-04-20 03:35:30 -06:00
Glenn Johnson
cbf7ad8cc0
r-fastica: new package ( #23096 )
2021-04-20 11:35:03 +02:00
Glenn Johnson
80e60ceb91
r-gamm4: new package ( #23097 )
2021-04-20 11:34:38 +02:00
Glenn Johnson
6cf91449d4
r-globaltest: new package ( #23098 )
2021-04-20 11:34:13 +02:00
Glenn Johnson
ba9eb19e5d
r-illuminahumanmethylationepicanno-ilm10b4-hg19: new package ( #23101 )
2021-04-20 11:31:05 +02:00
