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r-globaltest: new package (#23098)

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Glenn Johnson 2021-04-20 04:34:13 -05:00 committed by GitHub
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# Copyright 2013-2021 Lawrence Livermore National Security, LLC and other
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class RGlobaltest(RPackage):
"""Testing Groups of Covariates/Features for Association with a Response
Variable, with Applications to Gene Set Testing:
The global test tests groups of covariates (or features) for association
with a response variable. This package implements the test with diagnostic
plots and multiple testing utilities, along with several functions to
facilitate the use of this test for gene set testing of GO and KEGG
terms."""
bioc = "globaltest"
version('5.44.0', commit='571933d5c779a241740be913ff49ecdd59bcbc45')
depends_on('r-survival', type=('build', 'run'))
depends_on('r-biobase', type=('build', 'run'))
depends_on('r-annotationdbi', type=('build', 'run'))
depends_on('r-annotate', type=('build', 'run'))