hlrs-software-stack/spack
7
0
Fork 0
Code Issues Pull requests Projects Releases Packages Wiki Activity

angsd: fix typo in variants (#23081)

Browse source
This commit is contained in:
Massimiliano Culpo 2021-04-20 20:20:23 +02:00 committed by GitHub
parent 7dc9a0082b
commit 67afe7016f
No known key found for this signature in database
GPG key ID: 4AEE18F83AFDEB23
1 changed files with 9 additions and 8 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

17
var/spack/repos/builtin/packages/angsd/package.py
View file

@ -2,19 +2,20 @@
# Spack Project Developers. See the top-level COPYRIGHT file for details.
#
# SPDX-License-Identifier: (Apache-2.0 OR MIT)
from spack import *
class Angsd(MakefilePackage):
"""Angsd is a program for analysing NGS data. The software can handle a
number of different input types from mapped reads to imputed genotype
probabilities. Most methods take genotype uncertainty into account
instead of basing the analysis on called genotypes. This is especially
useful for low and medium depth data."""
"""Angsd is a program for analysing NGS data.
The software can handle a number of different input types from mapped
reads to imputed genotype probabilities. Most methods take genotype
uncertainty into account instead of basing the analysis on called
genotypes. This is especially useful for low and medium depth data.
"""
homepage = "https://github.com/ANGSD/angsd"
url = "https://github.com/ANGSD/angsd/archive/0.919.tar.gz"
url = "https://github.com/ANGSD/angsd/archive/0.919.tar.gz"
version('0.933', sha256='2f992325dc08fa25ac525d9300ef6bd61808e74c521b4cc72a2ce00d98f402bb')
version('0.921', sha256='8892d279ce1804f9e17fe2fc65a47e5498e78fc1c1cb84d2ca2527fd5c198772')
@ -29,7 +30,7 @@ class Angsd(MakefilePackage):
depends_on('lzma')
depends_on('curl')
depends_on('r', type='run', when='+rlib')
depends_on('r', type='run', when='+r')
def setup_run_environment(self, env):
env.set('R_LIBS', self.prefix.R)