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#!/bin/bash -l # # Install script inspired by the ebuild system of Gentoo Linux # # Christoph Niethammer <niethammer@hlrs.de> (C) 2011-2013 # # exit on any error! set -e # for debugging: # set -x # Reading in execution option SIT_RUN_OPTION=$2 if [[ -n $SIT_RUN_OPTION ]] ; then echo "Executing with option: $SIT_RUN_OPTION" else echo "Default execution" fi SIT_PATH=$(dirname $PWD/$0) SIT_CONFIG_FILE=$SIT_PATH/etc/sit.conf SIT_USER_CONFIG_FILE=$HOME/.sit # Reading in user configuration file if it exists if [[ -e $SIT_USER_CONFIG_FILE ]] ; then source $SIT_USER_CONFIG_FILE fi # Reading in global configuration file if [[ -e $SIT_CONFIG_FILE ]] ; then source $SIT_CONFIG_FILE fi source "$SIT_PATH/functions.sh" sit_countdown 1 # identify platform manually if no environment variable was set PLATFORM=${PLATFORM:=$SITE_PLATFORM_NAME} if [ -z $PLATFORM ]; then sit_info "Unknown platform using default platform '${DEFAULT_PLATFORM}' configuration" PLATFORM="${DEFAULT_PLATFORM}" fi sit_info "Platform: $PLATFORM" # compiler to use # (gnu|intel|pgi) COMPILER=${COMPILER:=${DEFAULT_COMPILER}} # use specific compiler version COMPILER_VERSION=${COMPILER_VERSION:=} # add a descriptor at the end of the installation path e.g. for special config options etc. PACKAGE_DESCRIPTOR=${PACKAGE_DESCRIPTOR:+-$PACKAGE_DESCRIPTOR} # Compiler specifications COMPILER_CONFIG_FILE="$SIT_PATH/etc/platform-configs/${PLATFORM}/compiler/${COMPILER}" if [ -e $COMPILER_CONFIG_FILE ] ; then source $COMPILER_CONFIG_FILE else sit_fail "Could not find configuration file for compiler '${COMPILER}' on platform '${PLATFORM}'." fi if [ "$COMPILER" == "system" ] ; then echo "Using system default compiler" COMPILER="" # prevent any compiler specs in the prefix else case $PLATFORM in hermit|hermit1) module swap $(module list -l 2>&1 | awk '/^PrgEnv-/{print $1}') PrgEnv-${COMPILER} if [ ! -z "$COMPILER_VERSION" ] ; then if [ "${COMPILER}" == "gnu" ] ; then module swap gcc gcc/$COMPILER_VERSION else module swap $COMPILER $COMPILER/$COMPILER_VERSION fi fi ;; laki|*) if [ -z "$COMPILER_VERSION" ] ; then COMPILER_MODULE=compiler/${COMPILER} else COMPILER_MODULE=compiler/${COMPILER}/${COMPILER_VERSION} fi echo "Loading compiler module ${COMPILER_MODULE}" module load ${COMPILER_MODULE} ;; esac fi if [ ! -z "${COMPILER}" ] ; then # reevaluate compiler version COMPILER_VERSION=$(eval "$COMPILER_VERSION_CMD") fi # make the compiler variables CC, CXX, FC and F77 available if [ ! -z "$COMPILER_OPTS" ] ; then echo "Compiler env: ${COMPILER_OPTS}" export ${COMPILER_OPTS} fi if [ ! -z $COMPILER ] ; then echo "Using compiler: $COMPILER version: $COMPILER_VERSION" fi if [ ! -z "$MPI" ] ; then MPI_MODULE="mpi/$MPI" if [ ! -z "$MPI_VERSION" ] ; then MPI_VERSION_NUM=${MPI_VERSION%%-*} case $MPI in impi) MPI_MODULE=${MPI_MODULE}${MPI_VERSION_NUM:+"/${MPI_VERSION_NUM}"} ;; *) MPI_MODULE=${MPI_MODULE}${MPI_VERSION_NUM:+"/${MPI_VERSION_NUM}-$COMPILER-$COMPILER_VERSION"} ;; esac fi echo "Loading MPI module ${MPI_MODULE}" module load $MPI_MODULE case $COMPILER in intel) if [[ $MPI == "impi" ]] ; then MPICC="mpiicc" MPICXX="mpiicpc" MPIFC="mpiifort" else MPICC="mpicc" MPICXX="mpicxx" MPIFC="mpif90" fi ;; gnu|*) MPICC="mpicc" MPICXX="mpicxx" MPIFC="mpif90" ;; esac echo "MPI compiler env: MPICC=$MPICC, MPICXX=$MPICXX, MPIFC=$MPIFC" MPI_DIR=${MPI_DIR:=$(dirname $(dirname $(which $MPICC)))} fi SCLASSFILE=$1 ACTION=$2 if [ -f $SCLASS_DIR/$SCLASSFILE ] ; then source $SCLASS_DIR/$SCLASSFILE else sit_fail "Could not find file $SCLASS_DIR/$SCLASSFILE" fi PACKAGENAME=${PACKAGENAME:=$PACKAGE} # construct the final installation directory path if [ -z $PREFIX ] ; then PREFIX="${PREFIX_BASE}/${CATEGORY}/${PACKAGE}/${VERSION}" PREFIX_SUFFIX=${MPI:+"-$MPI"}${MPI_VERSION_NUM:+"-$MPI_VERSION_NUM"} PREFIX_SUFFIX=$PREFIX_SUFFIX${COMPILER:+"-$COMPILER"}${COMPILER_VERSION:+"-$COMPILER_VERSION"} PREFIX_SUFFIX=$PREFIX_SUFFIX${PACKAGE_DESCRIPTOR} PREFIX=$PREFIX${PREFIX_SUFFIX:+"$PREFIX_SUFFIX"} fi # final working directory path WORKDIR=${WORKDIR_BASE}/${CATEGORY}/${PACKAGE}/${VERSION}$PREFIX_SUFFIX # path to the source code directory SRCDIR=${WORKDIR}/${P} # build directory (should be different from source directory): BUILDDIR=${WORKDIR}/build # logfile directory LOGDIR=${WORKDIR} # source the package class file a second time, so we can modify variables # using their default values. (Defaults depend on other vairables in # the class file like CATEGORY or PACKAGE) source $SCLASS_DIR/$SCLASSFILE echo "Package name: $PACKAGENAME" echo "Installation PREFIX: $PREFIX" echo "Working dir: $WORKDIR" echo "Source dir: $SRCDIR" echo "Build dir: $BUILDDIR" echo "Logfile dir: $LOGDIR" sit_countdown 3 # if working dir already exists and execution option is Default then remove # previous working directory and create new if [[ -d ${WORKDIR} && -z $SIT_RUN_OPTION ]] ; then sit_info "Removing existing working directory ${WORKDIR}" sit_countdown 5 rm -rf ${WORKDIR} fi if [ ! -d ${WORKDIR} ] ; then mkdir -p ${WORKDIR} mkdir -p ${BUILDDIR} fi if [ ! -z ${LOGDIR} ] ; then mkdir -p ${LOGDIR} else # TODO: this is dangerous as we compress and copy all *.log files inside LOGDIR! LOGDIR="/tmp" fi case $SIT_RUN_OPTION in "sitinfo") sit_sitinfo >> "$LOGDIR/sit_cmd.log" ;; "unpack") sit_unpack 2>&1 | tee "$LOGDIR/unpack.log"; ( exit ${PIPESTATUS[0]} ) ;; "prepare") sit_prepare 2>&1 | tee "$LOGDIR/prepare.log"; ( exit ${PIPESTATUS[0]} ) ;; "configure") sit_configure 2>&1 | tee "$LOGDIR/configure.log"; ( exit ${PIPESTATUS[0]} ) ;; "build") sit_build 2>&1 | tee "$LOGDIR/make.log"; ( exit ${PIPESTATUS[0]} ) ;; "pretest") sit_pretest 2>&1 | tee "$LOGDIR/pretest.log"; ( exit ${PIPESTATUS[0]} ) ;; "install") sit_install 2>&1 | tee "$LOGDIR/make_install.log"; ( exit ${PIPESTATUS[0]} ) ;; "posttest") sit_posttest 2>&1 | tee "$LOGDIR/posttest.log"; ( exit ${PIPESTATUS[0]} ) ;; "postinst") sit_postinst 2>&1 | tee "$LOGDIR/postinst.log"; ( exit ${PIPESTATUS[0]} ) ;; "copy_logs") sit_copy_logs ;; "setperms") sit_setperms ;; "") sit_sitinfo >> "$LOGDIR/sit_cmd.log" sit_unpack 2>&1 | tee "$LOGDIR/unpack.log"; ( exit ${PIPESTATUS[0]} ) sit_prepare 2>&1 | tee "$LOGDIR/prepare.log"; ( exit ${PIPESTATUS[0]} ) sit_configure 2>&1 | tee "$LOGDIR/configure.log"; ( exit ${PIPESTATUS[0]} ) sit_build 2>&1 | tee "$LOGDIR/make.log"; ( exit ${PIPESTATUS[0]} ) sit_pretest 2>&1 | tee "$LOGDIR/pretest.log"; ( exit ${PIPESTATUS[0]} ) sit_install 2>&1 | tee "$LOGDIR/make_install.log"; ( exit ${PIPESTATUS[0]} ) sit_posttest 2>&1 | tee "$LOGDIR/posttest.log"; ( exit ${PIPESTATUS[0]} ) sit_postinst 2>&1 | tee "$LOGDIR/postinst.log"; ( exit ${PIPESTATUS[0]} ) sit_copy_logs sit_setperms ;; *) echo "Argument $SIT_RUN_OPTION unrecognized." esac #sit_sitinfo >> "$LOGDIR/sit_cmd.log" #sit_unpack 2>&1 | tee "$LOGDIR/unpack.log"; ( exit ${PIPESTATUS[0]} ) #sit_prepare 2>&1 | tee "$LOGDIR/prepare.log"; ( exit ${PIPESTATUS[0]} ) #sit_configure 2>&1 | tee "$LOGDIR/configure.log"; ( exit ${PIPESTATUS[0]} ) #sit_build 2>&1 | tee "$LOGDIR/make.log"; ( exit ${PIPESTATUS[0]} ) #sit_pretest 2>&1 | tee "$LOGDIR/pretest.log"; ( exit ${PIPESTATUS[0]} ) #sit_install 2>&1 | tee "$LOGDIR/make_install.log"; ( exit ${PIPESTATUS[0]} ) #sit_posttest 2>&1 | tee "$LOGDIR/posttest.log"; ( exit ${PIPESTATUS[0]} ) #sit_postinst 2>&1 | tee "$LOGDIR/postinst.log"; ( exit ${PIPESTATUS[0]} ) #sit_copy_logs #sit_setperms cat <<EOF ############################################################################## # IMPORTANT! ############################################################################## # Do not forget to provide a module file! ############################################################################## EOF exit 0
2014-06-16 22:13:33 +00:00
#!/bin/bash -l
scripts for new versions of numlib packages
2013-06-12 08:27:24 +00:00
# sit class file
#
# Christoph Niethammer <niethammer@hlrs.de> (C) 2012
#
added sit command as comment, new package scripts
2013-10-17 10:22:26 +00:00
# laki sit command:
# PREFIX_BASE=/opt ./sit numlib/metis/5.1.0
#
# hermit sit command:
# PREFIX_BASE=/opt/hlrs ./sit numlib/metis/5.1.0
scripts for new versions of numlib packages
2013-06-12 08:27:24 +00:00
CATEGORY="numlib"
PACKAGE="metis"
VERSION="5.1.0"
URL="http://glaros.dtc.umn.edu/gkhome/metis/metis/overview"
INSTALLER="Elke Flehmig <flehmig@hlrs.de>"
# cmake 2.8 or higher is required
case $PLATFORM in
hermit|hermit1)
module load tools/cmake/2.8.10
module swap PrgEnv-cray PrgEnv-gnu
;;
laki)
module load tools/cmake/2.8.11.1
;;
esac
# Archive A and package name P
A=${PACKAGE}-${VERSION}.tar.gz
P=${PACKAGE}-${VERSION}
BUILDDIR=$SRCDIR
src_prepare() {
# set 64bit width for elementary data types
sit_info "patching metis.h with 64bit width"
cd $SRCDIR/include
patch metis.h < $SRC_POOL/5.1.0_metis.h_patch
}
src_configure() {
make config prefix=$PREFIX
}
src_install() {
make install
# mv manual to target (not included in make install)
sit_info "Installing manual"
cd $SRCDIR/manual; mv manual.pdf $PREFIX
}
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