spack/CHANGELOG.md

v0.13.4 (2020-02-07)

This release contains several bugfixes:

• bugfixes for invoking python in various environments (#14349, #14496, #14569)
• brought tab completion up to date (#14392)
• bugfix for removing extensions from views in order (#12961)
• bugfix for nondeterministic hashing for specs with externals (#14390)

v0.13.3 (2019-12-23)

This release contains more major performance improvements for Spack environments, as well as bugfixes for mirrors and a python issue with RHEL8.

• mirror bugfixes: symlinks, duplicate patches, and exception handling (#13789)
• don't try to fetch BundlePackages (#13908)
• avoid re-fetching patches already added to a mirror (#13908)
• avoid re-fetching alread added patches (#13908)
• avoid re-fetching alread added patches (#13908)
• allow repeated invocations of spack mirror create on the same dir (#13908)
• bugfix for RHEL8 when python is unavailable (#14252)
• improve concretization performance in environments (#14190)
• improve installation performance in environments (#14263)

v0.13.2 (2019-12-04)

This release contains major performance improvements for Spack environments, as well as some bugfixes and minor changes.

• allow missing modules if they are blacklisted (#13540)
• speed up environment activation (#13557)
• mirror path works for unknown versions (#13626)
• environments: don't try to modify run-env if a spec is not installed (#13589)
• use semicolons instead of newlines in module/python command (#13904)
• verify.py: os.path.exists exception handling (#13656)
• Document use of the maintainers field (#13479)
• bugfix with config caching (#13755)
• hwloc: added 'master' version pointing at the HEAD of the master branch (#13734)
• config option to allow gpg warning suppression (#13744)
• fix for relative symlinks when relocating binary packages (#13727)
• allow binary relocation of strings in relative binaries (#13724)

v0.13.1 (2019-11-05)

This is a bugfix release on top of v0.13.0. Specific fixes include:

• spack find now displays variants and other spec constraints
• bugfix: uninstall should find concrete specs by DAG hash (#13598)
• environments: make shell modifications partially unconditional (#13523)
• binary distribution: relocate text files properly in relative binaries (#13578)
• bugfix: fetch prefers to fetch local mirrors over remote resources (#13545)
• environments: only write when necessary (#13546)
• bugfix: spack.util.url.join() now handles absolute paths correctly (#13488)
• sbang: use utf-8 for encoding when patching (#13490)
• Specs with quoted flags containing spaces are parsed correctly (#13521)
• targets: print a warning message before downgrading (#13513)
• Travis CI: Test Python 3.8 (#13347)
• Documentation: Database.query methods share docstrings (#13515)
• cuda: fix conflict statements for x86-64 targets (#13472)
• cpu: fix clang flags for generic x86_64 (#13491)
• syaml_int type should use int.repr rather than str.repr (#13487)
• elpa: prefer 2016.05.004 until sse/avx/avx2 issues are resolved (#13530)
• trilinos: temporarily constrain netcdf@:4.7.1 (#13526)

v0.13.0 (2019-10-25)

v0.13.0 is our biggest Spack release yet, with many new major features. From facility deployment to improved environments, microarchitecture support, and auto-generated build farms, this release has features for all of our users.

Spack grew by over 700 packages in the past year, and the project now has over 450 contributors. Thanks to all of you for making this release possible.

Major new core features

• Chaining: use dependencies from external "upstream" Spack instances
• Environments now behave more like virtualenv/conda
  • Each env has a view: a directory with all packages symlinked in
  • Activating an environment sets PATH, LD_LIBRARY_PATH, CPATH, CMAKE_PREFIX_PATH, PKG_CONFIG_PATH, etc. to point to this view.
• Spack detects and builds specifically for your microarchitecture
  • named, understandable targets like skylake, broadwell, power9, zen2
  • Spack knows which compilers can build for which architectures
  • Packages can easily query support for features like avx512 and sse3
  • You can pick a target with, e.g. spack install foo target=icelake
• Spack stacks: combinatorial environments for facility deployment
  • Environments can now build cartesian products of specs (with matrix:)
  • Conditional syntax support to exclude certain builds from the stack
• Projections: ability to build easily navigable symlink trees environments
• Support no-source packages (BundlePackage) to aggregate related packages
• Extensions: users can write custom commands that live outside of Spack repo
• Support ARM and Fujitsu compilers

CI/build farm support

• spack release-jobs can detect package.py changes and generate .gitlab-ci.yml to create binaries for an environment or stack in parallel (initial support -- will change in future release).
• Results of build pipelines can be uploaded to a CDash server.
• Spack can now upload/fetch from package mirrors in Amazon S3

New commands/options

• spack mirror create --all downloads all package sources/resources/patches
• spack dev-build runs phases of the install pipeline on the working directory
• spack deprecate permanently symlinks an old, unwanted package to a new one
• spack verify chcecks that packages' files match what was originally installed
• spack find --json prints JSON that is easy to parse with, e.g. jq
• spack find --format FORMAT allows you to flexibly print package metadata
• spack spec --json prints JSON version of spec.yaml

Selected improvements

• Auto-build requested compilers if they do not exist
• Spack automatically adds RPATHs needed to make executables find compiler runtime libraries (e.g., path to newer libstdc++ in icpc or g++)
• setup-env.sh is now compatible with Bash, Dash, and Zsh
• Spack now caps build jobs at min(16, ncores) by default
• spack compiler find now also throttles number of spawned processes
• Spack now writes stage directories directly to $TMPDIR instead of symlinking stages within $spack/var/spack/cache.
• Improved and more powerful spec format strings
• You can pass a spec.yaml file anywhere in the CLI you can type a spec.
• Many improvements to binary caching
• Gradually supporting new features from Environment Modules v4
• spack edit respects VISUAL environment variable
• Simplified package syntax for specifying build/run environment modifications
• Numerous improvements to support for environments across Spack commands
• Concretization improvements

Documentation

• Multi-lingual documentation (Started a Japanese translation)
• Tutorial now has its own site at spack-tutorial.readthedocs.io
  • This enables us to keep multiple versions of the tutorial around

Deprecations

• Spack no longer supports dotkit (LLNL's homegrown, now deprecated module tool)
• spack build, spack configure, spack diy deprecated in favor of spack dev-build and spack install

Important package changes

• 3,563 total packages (718 added since 0.12.1)
• Spack now defaults to Python 3 (previously preferred 2.7 by default)
• Much improved ARM support thanks to Fugaku (RIKEN) and SNL teams
• Support new special versions: master, trunk, and head (in addition to develop)
• Better finding logic for libraries and headers

v0.12.1 (2018-11-13)

This is a minor bugfix release, with a minor fix in the tutorial and a flake8 fix.

Bugfixes

• Add r back to regex strings in binary distribution
• Fix gcc install version in the tutorial

v0.12.0 (2018-11-13)

Major new features

• Spack environments
• spack.yaml and spack.lock files for tracking dependencies
• Custom configurations via command line
• Better support for linking Python packages into view directories
• Packages have more control over compiler flags via flag handlers
• Better support for module file generation
• Better support for Intel compilers, Intel MPI, etc.
• Many performance improvements, improved startup time

License

• As of this release, all of Spack is permissively licensed under Apache-2.0 or MIT, at the user's option.
• Consents from over 300 contributors were obtained to make this relicense possible.
• Previous versions were distributed under the LGPL license, version 2.1.

New packages

Over 2,900 packages (800 added since last year)

Spack would not be possible without our community. Thanks to all of our contributors for the new features and packages in this release!

v0.11.2 (2018-02-07)

This release contains the following fixes:

• Fixes for gfortran 7 compiler detection (#7017)
• Fixes for exceptions thrown during module generation (#7173)

v0.11.1 (2018-01-19)

This release contains bugfixes for compiler flag handling. There were issues in v0.11.0 that caused some packages to be built without proper optimization.

Fixes:

• Issue #6999: FFTW installed with Spack 0.11.0 gets built without optimisations

Includes:

• PR #6415: Fixes for flag handling behavior
• PR #6960: Fix type issues with setting flag handlers
• 880e319: Upstream fixes to list_url in various R packages

v0.11.0 (2018-01-17)

Spack v0.11.0 contains many improvements since v0.10.0. Below is a summary of the major features, broken down by category.

New packages

• Spack now has 2,178 packages (from 1,114 in v0.10.0)
• Many more Python packages (356) and R packages (471)
• 48 Exascale Proxy Apps (try spack list -t proxy-app)

Core features for users

• Relocatable binary packages (spack buildcache, #4854)
• Spack now fully supports Python 3 (#3395)
• Packages can be tagged and searched by tags (#4786)
• Custom module file templates using Jinja (#3183)
• spack bootstrap command now sets up a basic module environment (#3057)
• Simplified and better organized help output (#3033)
• Improved, less redundant spack install output (#5714, #5950)
• Reworked spack dependents and spack dependencies commands (#4478)

Major new features for packagers

• Multi-valued variants (#2386)
• New conflicts() directive (#3125)
• New dependency type: test dependencies (#5132)
• Packages can require their own patches on dependencies (#5476)
  • depends_on(..., patches=<patch list>)
• Build interface for passing linker information through Specs (#1875)
  • Major packages that use blas/lapack now use this interface
• Flag handlers allow packages more control over compiler flags (#6415)
• Package subclasses support many more build systems:
  • autotools, perl, qmake, scons, cmake, makefile, python, R, WAF
  • package-level support for installing Intel HPC products (#4300)
• spack blame command shows contributors to packages (#5522)
• spack create now guesses many more build systems (#2707)
• Better URL parsing to guess package version URLs (#2972)
• Much improved PythonPackage support (#3367)

Core

• Much faster concretization (#5716, #5783)
• Improved output redirection (redirecting build output works properly #5084)
• Numerous improvements to internal structure and APIs

Tutorials & Documentation

• Many updates to documentation
• New tutorial material from SC17
  • configuration
  • build systems
  • build interface
  • working with module generation
• Documentation on docker workflows and best practices

Selected improvements and bug fixes

• No longer build Python eggs -- installations are plain directories (#3587)
• Improved filtering of system paths from build PATHs and RPATHs (#2083, #3910)
• Git submodules are properly handled on fetch (#3956)
• Can now set default number of parallel build jobs in config.yaml
• Improvements to setup-env.csh (#4044)
• Better default compiler discovery on Mac OS X (#3427)
  • clang will automatically mix with gfortran
• Improved compiler detection on Cray machines (#3075)
• Better support for IBM XL compilers
• Better tab completion
• Resume gracefully after prematurely terminated partial installs (#4331)
• Better mesa support (#5170)

Spack would not be possible without our community. Thanks to all of our contributors for the new features and packages in this release!

v0.10.0 (2017-01-17)

This is Spack v0.10.0. With this release, we will start to push Spack releases more regularly. This is the last Spack release without automated package testing. With the next release, we will begin to run package tests in addition to unit tests.

Spack has grown rapidly from 422 to 1,114 packages, thanks to the hard work of over 100 contributors. Below is a condensed version of all the changes since v0.9.1.

Packages

• Grew from 422 to 1,114 packages
  • Includes major updates like X11, Qt
  • Expanded HPC, R, and Python ecosystems

Core

• Major speed improvements for spack find and concretization
• Completely reworked architecture support
  • Platforms can have front-end and back-end OS/target combinations
  • Much better support for Cray and BG/Q cross-compiled environments
• Downloads are now cached locally
• Support installations in deeply nested directories: patch long shebangs using sbang

Basic usage

• Easier global configuration via config.yaml
  • customize install, stage, and cache locations
• Hierarchical configuration scopes: default, site, user
  • Platform-specific scopes allow better per-platform defaults
• Ability to set cflags, cxxflags, fflags on the command line
• YAML-configurable support for both Lmod and tcl modules in mainline
• spack install supports --dirty option for emergencies

For developers

• Support multiple dependency types: build, link, and run
• Added Package base classes for custom build systems
  • AutotoolsPackage, CMakePackage, PythonPackage, etc.
  • spack create now guesses many more build systems
• Development environment integration with spack setup
• New interface to pass linking information via spec objects
  • Currently used for BLAS/LAPACK/SCALAPACK libraries
  • Polymorphic virtual dependency attributes: spec['blas'].blas_libs

Testing & Documentation

• Unit tests run continuously on Travis CI for Mac and Linux
• Switched from nose to pytest for unit tests.
  • Unit tests take 1 minute now instead of 8
• Massively expanded documentation
• Docs are now hosted on spack.readthedocs.io