* update mda dependencies
* apply black
* Update var/spack/repos/builtin/packages/py-gsd/package.py
* Update var/spack/repos/builtin/packages/py-griddataformats/package.py
* Update var/spack/repos/builtin/packages/py-griddataformats/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* remove numpy upper bound
* Update var/spack/repos/builtin/packages/py-griddataformats/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Update var/spack/repos/builtin/packages/py-gsd/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
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Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* update proj
* re-add autotools support
* style
* Setup env in builders
* Drop direct windows conflict for older versions
* Default to CMake
Add new style class definiton
* Proj: setup_run_environment in package not builder
* Proj: move run env changes to pkg, rm cmake arg
* Set PROJ_LIB during build
* Style
* Rm redundant configure arg
Currently, if two compilers with the same spec differ on the flags, the concretizer will:
1. mix both sets of flags for the spec in the ASP program
2. error noting that the set of flags from the compiler (both of them) doesn't match the set from the lower priority compiler
This PR fixes both -- only flags from the highest priority compiler with a given spec are considered.
* py-elasticsearch: new versions
Also add py-elastic-transport as a new dependency
* py-elasticsearch: py-urllib3 is no longer a dependency
* Update var/spack/repos/builtin/packages/py-elasticsearch/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
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Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
`mypy` only understands `sys.platform == "win32"`, not indirect assignments of that
value to things like `is_windows`. If we don't use the accepted platform checks, `mypy`
registers many Windows-only symbols as not present on Linux, when it should skip the
checks for platform-specific code.
* add 2.14.2 py-astroid version
* add py-pylint 2.26.2
* fix black
* fix py-dill depends_on
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* fix py-astroid minor versionning
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* modify typing_extensions depends_on
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Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Start using paths found in extra_rpaths in compilers.yaml when building
* running black and changing maintainer list
* changing import order to pass isort
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Co-authored-by: Matthew Lieber <lieber.31@osu.edu>
Update `spack.util.environment` to remove legacy idioms.
* Remove kwargs from method signature and use a class for traces
* Uppercase a few global variables
* spack.util.environment: add type-hints
* Improve docstrings
* Fixed most style issues reported by pylint
* py-ipdb: updating versions
Signed-off-by: Loïc Pottier <pottier1@llnl.gov>
* py-ipdb: fixing versions problem and deleting 10.1 which is too old for Python > 3.6
Signed-off-by: Loïc Pottier <pottier1@llnl.gov>
* Update var/spack/repos/builtin/packages/py-ipdb/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* py-ipdb: removed useless dependencies
Signed-off-by: Loïc Pottier <pottier1@llnl.gov>
* Update var/spack/repos/builtin/packages/py-ipdb/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Update var/spack/repos/builtin/packages/py-ipdb/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* py-ipdb: missing @
Signed-off-by: Loïc Pottier <pottier1@llnl.gov>
* Update var/spack/repos/builtin/packages/py-ipdb/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
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Signed-off-by: Loïc Pottier <pottier1@llnl.gov>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* e3sm-scorpio: add e3sm-scorpio package
This is the Scorpio package from the e3sm.org site.
* fixed style errors
* removed unneeded dependency on cmake
Use correct `shlib_symbol_version` for Julia 1.8, work around issue where libuv-julia's git checkout has arbitrary mtime, causing make to regenerate configure scripts, sometimes.
* Add a `py-gmxapi` package.
This package provides the Python package for the GROMACS
public API. The Python package is not strongly coupled to
a specific GROMACS _version_, but its compiled extension module
is strongly coupled to a specific GROMACS _installation_.
* Update conflict info.
In order to allow `^gromacs@2022.1` while rejecting `^gromacs@2022`,
we need to compare to `gromacs@2022.0`.
* Apply suggestions from code review
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Apply suggestions from code review.
* Simplify build system structure.
* Update dependencies for completeness.
* Update var/spack/repos/builtin/packages/py-gmxapi/package.py
Per code review, pretend gmxapi <0.4 doesn't exist, for simplicity.
* Update var/spack/repos/builtin/packages/py-gmxapi/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Update var/spack/repos/builtin/packages/py-gmxapi/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
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Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
a shared library /lib64/libcxi.so, which seems to also appear on other
non-slingshot systems. This patch also checks to make sure that there
is a Cray programming enviornment in /opt/cray/pe in addition to the
shared library.
* py-pygments 2.12; fix py-docutils, again
`2.12` is the latest for which our style hack works, beyond that we need
our own package to make a plugin.
Old docutils needs old setuptools
* py-setuptools is always a dep
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Update the range
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
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Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
The Intel OneAPI's extreme pickiness continues to bring out
buggy/noncompliant code.
This patch fixes an error in the configure.in embedded 'c' test code
and also in a file with an initialized, but unused, variable.
Signed-off-by: Howard Pritchard <howardp@lanl.gov>
* Updates to release 0.6.
* Dep updates
* Dep version fix
* Another version fix
* Fix typo
* UFL version fix
* Update var/spack/repos/builtin/packages/py-fenics-dolfinx/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Update var/spack/repos/builtin/packages/py-fenics-ffcx/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Some updates following review
* Update var/spack/repos/builtin/packages/py-fenics-dolfinx/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* More updates
* More updates
* build/run updates
* Small fix
* Fix version number.
* specify lower bounds for python dependencies
* address style issues
* address style issues
* address PR comments
* amend setuptools dependency to be of type build only
* amend setuptools dependency to be of type run and build for ffcx and ufl
* add build dependency to ensure import tests pass
---------
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
Co-authored-by: Matthew Archer <ma595@cam.ac.uk>
