Commit graph

12324 commits

Author SHA1 Message Date
Jordan Moxon
9176dc29b0 ssht: new package (#9518) 2018-10-15 12:44:09 -07:00
snehring
ac68ed8fa8 redundans: replace incorrect hard-coded path for sspace-standard (#9483) 2018-10-15 12:43:02 -07:00
Matthias Diener
13c83b8ca4 cmake: add version 3.12.3 (#9528) 2018-10-15 12:40:38 -07:00
Michael Kuhn
cc6e765d28 meson: explicitly add --libdir (#9504)
If we do not specify libdir explicitly, Meson chooses something like
lib/x86_64-linux-gnu, which causes problems when trying to find libraries
and pkg-config files.
2018-10-15 11:14:59 -07:00
Ricardo Silva
24865fccdc sra-toolkit: new version and preserve symlinks (#9525)
Before this, the same files were copied 3 times
2018-10-15 11:09:00 -07:00
Jon Rood
3a2088b4f7 Build Nalu-Wind and Trilinos statically on Darwin (#9522)
* Added conflict in Trilinos for STK when building as shared on Darwin.
* Created shared variant for Nalu and Nalu-Wind to automatically build
  Trilinos as static library on Darwin. 
* Moved ECP tags from Nalu to Nalu-Wind (the latter is the official
  ECP application).
2018-10-15 11:03:11 -07:00
Leonhard Reichenbach
91f9a25905 py-scikit-learn: added version 0.20.0 (#9526) 2018-10-15 10:25:05 -07:00
Justin M Wozniak
ec81ec5f54 Swift/T Release 1.3 (#4641)
New release of Swift/T along with turbine, adlbx, and exmcutils
dependencies. Update URLs for archive downloads.
2018-10-12 17:32:27 -07:00
Andreas Baumbach
028391c0a3 py-spyder: update dependencies and fix build (#9207)
* Remove py-setuptools dependency from py-spyder (fixes #9205)
* Add constraint on transitive qt dependency to build with webkit
  extension (required for this package)
* Update pycodestyle dependency constraints
* reordered dependencies (py-zmq, py-chardet) to confirm to the
  ordering in setup.py
2018-10-12 10:57:32 -07:00
Peter Scheibel
6977d933c8
buildcache install: generate modules (#9509)
Spack packages installed using spack buildcache were not running
post-install hooks, which create module files and manage licenses
(if necessary).

This was already occurring for Spack packages installed with
spack install --use-cache
2018-10-12 10:43:06 -07:00
Leonhard Reichenbach
b0430457aa Added py-pandas@0.23.4 and py-bottleneck@1.2.1 (#9515) 2018-10-12 18:52:39 +02:00
Michael Kuhn
84f4e86358 Update scorep and friends (#9495)
- cube: Add 4.4.2, add conflicts for ~gui, build 4.4 from cubegui tar
- cubelib: Add 4.4.2
- cubew: Add 4.4.1
- opari2: Add 2.0.4
- scorep: Add 4.1
2018-10-12 18:51:52 +02:00
Satish Balay
e38f39e4ea
superlu-dist: fix v5.3.0 buid - its attempting to build internal blas (#9517)
https://github.com/spack/spack/issues/9514
2018-10-12 10:58:37 -05:00
Lars Bilke
6db1472c58 vtk: Added mpi variant (#9494) 2018-10-12 11:33:01 +02:00
Michael Kuhn
24c75d39e4 codes, dia, nest: fix pkg-config dependency (#9498)
pkgconfig is the virtual provider, pkg-config is a specific
implementation.
2018-10-12 09:57:44 +02:00
Michael Kuhn
cfd0b46941 at-spi2-atk: add missing pkgconfig dependency (#9503) 2018-10-12 09:56:44 +02:00
Michael Kuhn
1200b19b52 dbus: add missing pkgconfig dependency (#9497) 2018-10-12 09:55:33 +02:00
sknigh
a7dc725e2d Ease nlohmann-json conflict with gcc 4.8 (#9506) 2018-10-12 09:45:54 +02:00
Michael Kuhn
2ae75702c0 libepoxy: fix build (#9508)
- Add missing pkgconfig dependency
- Explicitly disable egl
2018-10-12 09:34:09 +02:00
Denis Davydov
5196c1a51a dealii: add 9.0.1 and update to sha256 (#9511) 2018-10-12 09:17:26 +02:00
Greg Becker
d1a5113cfe permissions: add permission configuration to packages.yaml (#8773)
Spack can now be configured to assign permissions to the files installed by a package.

In the `packages.yaml` file under `permissions`, the attributes `read`, `write`, and `group` control the package permissions. These attributes can be set per-package, or for all packages under `all`. If permissions are set under `all` and for a specific package, the package-specific settings take precedence.  The `read` and `write` attributes take one of `user`, `group`, and `world`.

   packages:
    all:
      permissions:
        write: group
        group: spack
    my_app:
      permissions:
        read: group
        group: my_team
2018-10-11 14:29:07 -07:00
Satish Balay
91fbc59f22
amrex: add in new version for xsdk [18.09.1, 18.10] (#9501) 2018-10-11 12:47:21 -05:00
Miroslav Stoyanov
a3ffaefebd updated tasmanian package with v6.0, improved depend_on and conflicts information (#9438) 2018-10-11 11:25:20 -05:00
Satish Balay
0226546c29
superlu-dist: switch to sha256sum (#9499)
replace 5.1.1 with 5.1.2 as 5.1.1 does not build for me. [and 5.1.3 is preferable in this 5.1 series anyway]
2018-10-11 10:59:27 -05:00
Gustavo Chávez
4b50928a36 Update superlu-dist package.py to support latest release v6.0.0 (#9445)
* superlu-dist: Update package.py for superlu-dist v6.0.0 using CMake

* superlu_dist: Update the header of package.py

* Specify lapack_blas and DCMAKE_INSTALL_LIBDIR
disable support for superlu-dist before v5
2018-10-11 10:06:43 -05:00
Denis Davydov
a6fb2fdea4 trilinos: disable superlu-dist by default (#9492)
current stable releases of PETSc and Trilinos have non-overlapping
requirements on Superlu-dist. For now turn it off by default in
Trilinos, which requires older versions.
2018-10-11 08:19:32 -05:00
Michael Kuhn
d8414dd770 go: Add 1.11.1 (#9493) 2018-10-11 12:08:42 +02:00
Zack Galbreath
bc8bb9dfaf Make CDash reporting easier to use (#9357)
* Better default CLI arguments for CDash reporting

--log-format=cdash is now implied if you specify the --cdash-upload-url
option to spack install.

We also now default to writing CTest XML files to cdash_report/ when using
the CDash reporter if no --log-file argument was specified.

* Improved documentation on how to use the CDash reporter
2018-10-10 22:29:14 -07:00
Robert Blake
b18fea6c83 ncdu: add new versions (#9477) 2018-10-10 19:15:33 -07:00
Piotr Luszczek
b100d1fc40 Magma: add version 2.4.0 (#9478) 2018-10-10 19:14:31 -07:00
Denis Davydov
2914644b30 openblas: patch experimental USE_TLS makefile option for 0.3.3 (#9474) 2018-10-10 18:58:47 -07:00
Greg Becker
7ece1a8676 Correct name for install_path_scheme in defaults config.yaml (#9482)
Default config.yaml mis-named `install_path_scheme` as `directory_layout`.
This commit corrects the error.
2018-10-10 18:54:58 -07:00
Phil Carns
312de47594 update rdma-core package to specify rundir (#9370) 2018-10-10 18:51:19 -07:00
sknigh
aac8d52075 vtk: added v8.1.1, added option to disable libharu (#9475)
* Added VTK 8.1.1, added option to disable libharu
* Add variant description to vtk+libharu
2018-10-10 14:57:28 -07:00
Serban Maerean
113b750b89 Update compile flags for netlib-lapack when building with the XL compiler. (#9318)
We need to use -O3 -qstrict -qnohot. Modified ibm-xl.patch and netlib-lapack
package file.
2018-10-10 14:16:50 -07:00
sknigh
013d4ad6a0 Added sst-core and variant for core to sst-macro. (#9380) 2018-10-10 11:02:18 -07:00
Levi Baber
53b19e7919
perl-scalar-util-numeric: new package (#9466) 2018-10-10 12:35:37 -05:00
Gregory Lee
7699419fc1 new xdot.py package and necessary updates to GUI libs (#9179)
* new xdot.py package and necessary updates to GUI libs

* new xdot.py package and necessary updates to GUI libs
2018-10-10 19:07:51 +02:00
Michael Kuhn
e176f2a2f5 Fix missing dependencies and glibc build failures (#9106)
* bison: Add missing build dependencies

bison also depends on cmp, which is currently not available in Spack.

* help2man: Add missing build dependency

* m4: Fix build with newer versions of glibc

* openssl: Add missing build dependency

openssl's configure script is actually a Perl script.

* texinfo: Add missing perl dependency

* diffutils: New package

* findutils: Fix build with newer versions of glibc

* mvapich2, mpich: Add missing findutils dependency
2018-10-10 14:17:12 +02:00
Michael Kuhn
b85a910463 rdma-core: Fix checksum for @17.1 (#9480) 2018-10-10 14:06:51 +02:00
Seth R. Johnson
8ab6539c0e Add important variants to MOAB and Geant4 (#9409)
* Add option to disable threads for Geant4
* Add option to enable DagMC in MOAB
* Explicitly add OFF flag when threading is disabled
* Fix unintentional enabling of C++14 in Geant4
  The following always evaluated to True:
    'c++14' or 'c++1y' in spec:
2018-10-09 17:05:49 -07:00
Dan Han
aede227580 matlab: new version (#9427) 2018-10-09 16:58:52 -07:00
Levi Baber
3e565a734a braker: add missing deps (#9468) 2018-10-09 16:55:28 -07:00
sknigh
03231a39db Added nlohmann-json v3.3.0 (#9463) 2018-10-09 16:54:59 -07:00
Justin Stanley
6c4e0b1bf1 sspace-standard: add perl-perl4-corelibs dep, fix perl scripts (#9473)
perl scripts were pointing to /usr/bin/perl, changed to point to
the spack-installed perl
2018-10-09 16:54:32 -07:00
Greg Becker
ca0d9ae7f0
Make builtin flag handlers available in package scope (#8668)
* Push default flag handlers into module scope

* Preserve backwards compatibility of builtin flag handler names

Ensure Spack continues to work for packages using the `Package.env_flags` idiom and equivalent.

* update docs and tests to match

* Update packages to match new syntax
2018-10-09 15:18:31 -07:00
Mark W. Krentel
54bd049d99 xerces-c: add variant for transcoder, rework config flags. (#9393)
* xerces-c: Add variant for choice of transcoder (gnuiconv, iconv, icu,
  macos, windows).  It's important to specify a --enable-transcoder
  option on the configure line or else xerces may make a different
  choice when multiple transcoders are available.
* Pass the compile flags to configure.  For cflags and cxxflags, this is
  necessary to respect the value from the spack install line.
  Otherwise, xerces (and any autotools package) will choose a default
  value that overrides the spack compiler wrapper.
* Add xerces version 3.2.2.
* icu4c needs the --enable-rpath configure option on Darwin
2018-10-09 15:12:34 -07:00
Dan Han
5cafe1b4e8 blastplus: newest version 2.7.1 (#9472) 2018-10-09 13:22:34 -07:00
Satish Balay
5e4264ed89
xsdk: reorder develop version statements (#9469) 2018-10-09 14:19:29 -05:00
Denis Davydov
ab099e9ba3 trilinos: extend TPetra explicit instantiations and fix missing Teuchos counterparts (#9448) 2018-10-09 12:07:13 -07:00