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redundans: replace incorrect hard-coded path for sspace-standard (#9483)

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snehring 2018-10-15 14:43:02 -05:00 committed by Peter Scheibel
parent 13c83b8ca4
commit ac68ed8fa8
1 changed files with 5 additions and 0 deletions
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var/spack/repos/builtin/packages/redundans/package.py
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@ -46,7 +46,12 @@ class Redundans(Package):
depends_on('snap-berkeley@1.0beta.18:', type=('build', 'run'))
def install(self, spec, prefix):
sspace_location = join_path(spec['sspace-standard'].prefix,
'SSPACE_Standard_v3.0.pl')
mkdirp(prefix.bin)
filter_file(r'sspacebin = os.path.join(.*)$',
'sspacebin = \'' + sspace_location + '\'',
'redundans.py')
install('redundans.py', prefix.bin)
with working_dir('bin'):
install('fasta2homozygous.py', prefix.bin)