Commit graph

22344 commits

Author SHA1 Message Date
Gianluca Ficarelli
f71d93fc55
py-submitit: add new package (#25699) 2021-09-02 07:58:02 -05:00
Gilles Gouaillardet
2d78045cdd
gromacs: add v2021.3 (#25750) 2021-09-02 12:18:05 +02:00
Vanessasaurus
8e61f54260
start of work to add spack audit packages-https checker (#25670)
This PR will add a new audit, specifically for spack package homepage urls (and eventually
other kinds I suspect) to see if there is an http address that can be changed to https.

Usage is as follows:

```bash
$ spack audit packages-https <package>
```
And in list view:

```bash
$ spack audit list
generic:
  Generic checks relying on global variables

configs:
  Sanity checks on compilers.yaml
  Sanity checks on packages.yaml

packages:
  Sanity checks on specs used in directives

packages-https:
  Sanity checks on https checks of package urls, etc.
```

I think it would be unwise to include with packages, because when run for all, since we do requests it takes a long time. I also like the idea of more well scoped checks - likely there will be other addresses for http/https within a package that we eventually check. For now, there are two error cases - one is when an https url is tried but there is some SSL error (or other error that means we cannot update to https):

```bash
$ spack audit packages-https zoltan
PKG-HTTPS-DIRECTIVES: 1 issue found
1. Error with attempting https for "zoltan": 
    <urlopen error [SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: Hostname mismatch, certificate is not valid for 'www.cs.sandia.gov'. (_ssl.c:1125)>
```
This is either not fixable, or could be fixed with a change to the url or (better) contacting the site owners to ask about some certificate or similar.

The second case is when there is an http that needs to be https, which is a huge issue now, but hopefully not after this spack PR.

```bash
$ spack audit packages-https xman
Package "xman" uses http but has a valid https endpoint.
```

And then when a package is fixed:

```bash
$ spack audit packages-https zlib
PKG-HTTPS-DIRECTIVES: 0 issues found.
```
And that's mostly it. :)

Signed-off-by: vsoch <vsoch@users.noreply.github.com>

Co-authored-by: vsoch <vsoch@users.noreply.github.com>
2021-09-02 08:46:27 +02:00
Cody Balos
8a7af82a82
py-adios: add new version (#25746) 2021-09-01 23:19:45 -07:00
Harmen Stoppels
0c61b31922
Bump nlohman-json and fix cmake args (#25504)
* Bump nlohman-json and fix cmake args

* Rename variant
2021-09-01 18:28:11 -07:00
David Beckingsale
156edffec2
Update versions for RAJA, CHAI, Umpire and camp (#25528) 2021-09-01 17:58:47 -07:00
eugeneswalker
6d484a055a
py-jupyterhub: add version: 1.4.1 (#24890)
* py-jupyterhub: add version: 1.4.1

* dont need mako for latest release

* sort dependencies

* notebook isnt used for 1.4.1+

* add dependency on py-jupyter-telemetry; create new package py-jupyter-telemetry

* py-jupyter-telemetry: declare missing dependencies

* py-jupyterhub: need more specific depends_on before less specific

* add py-json-logger; py-jupyter-telemetry: add depends_on for py-json-logger

* Update var/spack/repos/builtin/packages/py-jupyter-telemetry/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* remove py-json-logger erroneously and duplicatively added

* Update var/spack/repos/builtin/packages/py-jupyterhub/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* need py-alembic@1.4: for newest py-jupyterhub

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2021-09-01 22:58:24 +00:00
Harmen Stoppels
03331de0f2
bugfix: R packages can be concretized together with clingo again (#25730) 2021-09-01 14:12:55 -07:00
David Beckingsale
aabece46ba
Add variant to allow unsupported compiler & CUDA combinations (#19736)
Sometimes users need to be able to override the conflicts in `CudaPacakge`.  This introduces a variant to enable/disable them.
2021-09-01 11:34:20 -07:00
Harmen Stoppels
4c23059017
Speed-up two unit tests by using builtin.mock instead of builtin (#25544) 2021-09-01 11:58:29 +02:00
Nisarg Patel
ab37ac95bf
Adding new versions of redis (#25714) 2021-09-01 11:39:39 +02:00
Harmen Stoppels
2411a9599e
nghttp2: add v1.44.0, fix build (#25605) 2021-09-01 11:33:31 +02:00
Peter Scheibel
b0ee7deaa7
allow building silo+mpi ^hdf5~mpi (#25724) 2021-09-01 09:43:57 +02:00
Richarda Butler
7adacf967d
Legion: Add E4S testsuite stand alone test (#25285)
Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2021-08-31 16:57:55 -07:00
Richarda Butler
2633cf7da6
Papyrus: Add E4S testsuite stand alone test (#25324) 2021-08-31 15:56:20 -07:00
Hadrien G
3c6050d3a2
acts: add v12.0.0, v12.0.1 (#25697) 2021-08-31 16:44:01 +02:00
Scott Wittenburg
b34f289796
Pipelines: disable power builds (#25704) 2021-08-30 17:19:42 -07:00
Jen Herting
beb3524392
[py-plotly] added version 5.2.2 (#25668)
* [py-plotly] added version 5.2.2

* [py-plotly] flake8

* [py-plotly] requests not required for new version
2021-08-30 16:15:49 -05:00
Adam J. Stewart
8ee5bf6d03
py-pythran: update checksum for patch (#25693)
* Replace URL patch with file patch
* Add comment explaining patch origin and purpose
2021-08-30 10:02:39 -07:00
psakievich
a018f48df9
Updates to Exawind packages (#25568) 2021-08-30 09:22:55 -06:00
lorddavidiii
e51463f587
asciidoc-py3: add v9.1.0, v9.0.5 and v9.0.4 (#25562) 2021-08-30 08:32:03 -06:00
Piotr Luszczek
378543b554
plasma: add version 21.8.29, migrate url (#25688) 2021-08-30 07:46:46 -06:00
Valentin Volkl
3cd224afbf
gaudi: update py-xenv dependency (#25457) 2021-08-30 07:13:41 -06:00
Mikael Simberg
44c0089be4
Add patch to fix Boost with CCE and CUDA (#25534) 2021-08-30 05:19:54 -06:00
Bryan Herman
65584a3b92
universal-ctags: add version p5.9.20210829.0 (#25361) 2021-08-30 11:51:47 +02:00
Phil Carns
ab657d7b53
mochi-margo: add v0.9.5 (#25365) 2021-08-30 11:42:36 +02:00
Ryan Marcellino
d3d0ee7328
miniconda3: add v4.10.3 (#25442)
Co-authored-by: Cloud User <marcryan@ryanmarcelli001.hzterscemazurawp3xenxzahla.bx.internal.cloudapp.net>
2021-08-30 11:39:27 +02:00
Ryan Marcellino
ed17c3638b
anaconda3: add v2021.05 (#25443)
Co-authored-by: Cloud User <marcryan@ryanmarcelli001.hzterscemazurawp3xenxzahla.bx.internal.cloudapp.net>
2021-08-30 11:38:23 +02:00
Valentin Volkl
2f777d08a2
rivet: fixes for gcc@10: (#25454) 2021-08-30 11:37:39 +02:00
kwryankrattiger
9be81ac4d9
Add documentation on compiler environment (#25508) 2021-08-30 11:17:03 +02:00
lorddavidiii
e60e41d9ca
ocl-icd: add v2.3.1 (#25561) 2021-08-30 11:11:16 +02:00
dependabot[bot]
a2293e6ee1
build(deps): bump codecov/codecov-action from 2.0.2 to 2.0.3 (#25594)
Bumps [codecov/codecov-action](https://github.com/codecov/codecov-action) from 2.0.2 to 2.0.3.
- [Release notes](https://github.com/codecov/codecov-action/releases)
- [Changelog](https://github.com/codecov/codecov-action/blob/master/CHANGELOG.md)
- [Commits](https://github.com/codecov/codecov-action/compare/v2.0.2...v2.0.3)

---
updated-dependencies:
- dependency-name: codecov/codecov-action
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <support@github.com>

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2021-08-30 10:58:12 +02:00
Mikael Simberg
d381ab77b2
boost: add v1.77.0 (#25536) 2021-08-30 10:19:49 +02:00
Adam J. Stewart
1bf051e229
py-pbr: fix import tests (#25679) 2021-08-30 09:11:44 +02:00
Adam J. Stewart
506f62ddfe
py-jupyterlab: fix import tests (#25680) 2021-08-30 09:11:30 +02:00
Adam J. Stewart
a6a448b16c
py-metpy: fix import tests (#25681) 2021-08-30 09:11:14 +02:00
Adam J. Stewart
0dfa49af8e
py-flit-core: build from source (#25682) 2021-08-30 09:09:08 +02:00
Barry Rountree
b3128af901
tmux: added additional versions. (#25684)
Added sha256 checksums for 3.21, 3.2, 3.1c 3.1a, 3.1, 3.0 and 2.9a.

Co-authored-by: Barry <rountree4@llnl.gov>
2021-08-30 09:07:43 +02:00
Joe Schoonover
5029b8ca55
FLAP: add new package (#25685)
Co-authored-by: Joe Schoonover <joe@fluidnumerics.com>
2021-08-30 09:04:05 +02:00
Hadrien G
0d226aa710
acts: add v11.0.0, v10.0.0 (#25444) 2021-08-30 00:58:39 -06:00
Sebastian Schmitt
07a9cb87ef
Bump py-salib (#25403) 2021-08-29 08:19:12 -05:00
Kai Germaschewski
7cafe7dd66
add 'develop' branch to cmake package (#25623)
Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
2021-08-28 18:42:55 +02:00
Massimiliano Culpo
40788cf49a
Add a __reduce__ method to Spec (#25658)
* Add a __reduce__ method to Spec

fixes #23892

The recursion limit seems to be due to the default
way in which a Spec is serialized, following all
the attributes. It's still not clear to me why this
is related to being in an environment, but in any
case we already have methods to serialize Specs to
disk in JSON and YAML format. Here we use them to
pickle a Spec instance too.

* Downgrade to build-hash

Hopefully nothing will change the package in
between serializing the spec and sending it
to the child process.

* Add support for Python 2
2021-08-28 07:31:16 -07:00
Chen Wang
025dbb2162
recorder: add v2.2.1, v2.2.0, "master" and "pilgrim" (#25674) 2021-08-28 10:17:35 +02:00
Harmen Stoppels
e2b9ba3001
Add zstd support to libarchive (#25659) 2021-08-27 17:28:46 -07:00
Adam J. Stewart
3a4073cfff
py-flit: add maintainer (#25667) 2021-08-27 17:26:41 -07:00
Harmen Stoppels
9577d890c4
add py-flameprof (#25539) 2021-08-27 17:22:35 -06:00
Harmen Stoppels
f5ab3ad82a
Fix: --overwrite backs up old install dir, but it gets destroyed anyways (#25583)
* Make sure PackageInstaller does not remove the just-restored
  install dir after failure in spack install --overwrite
* Remove cryptic error message and rethrow actual error
2021-08-27 12:41:24 -07:00
Tamara Dahlgren
b5d3c48824
Load package environment prior to stand-alone/smoke test execution (#25619) 2021-08-27 18:46:26 +00:00
Harmen Stoppels
9d17d474ff
Add missing link dep for py-uwsgi (#25654) 2021-08-27 13:44:21 -05:00