* Add support for clang in oneapi packages with OpenMP
* Add fallback search for libomp in OneApi package with OpenMP threading
* Add requires for the compiler when using threads=openmp in intel-oneapi-mkl
* Cosmetic changes to messages in oneapi.py
* Update error message in oneapi.py
Co-authored-by: Robert Cohn <rscohn2@gmail.com>
* Update another error message in oneapi.py
Co-authored-by: Robert Cohn <rscohn2@gmail.com>
* Inline helper error function in oneapi.py
* Update one more error message in oneapi.py
* Wrap long line in oneapi.py
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Co-authored-by: Robert Cohn <rscohn2@gmail.com>
* allow packages to request no submodules be updated when self.submodules is a
callable function
* Extend the test added in Allow more fine-grained control over what submodules are
updated: part 2 #27293 to include this case
* Update the type signature for the submodules arg of version() in directives.py
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Co-authored-by: tjfulle <tjfulle@users.noreply.github.com>
* cmake: Enable CMAKE_EXPORT_COMPILE_COMMANDS
Enabling this option causes CMake to generate a compile_commands.json file
containing a compilation database that can be used to drive third-party tools.
CMAKE_EXPORT_COMPILE_COMMANDS only exists for CMake >= 3.5
Exporting compilation databases is only supported for Makefile and Ninja
generators, so check these conditions as well.
CMAKE_EXPORT_COMPILE_COMMANDS is only enabled in supported configurations
* khmer: new package @2.1.1
* rationalising patch
* adding dep, modifying patch
* Update var/spack/repos/builtin/packages/khmer/package.py
Indeed!
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Update package.py
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Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* possvm: new package @1.2
* black!
* appeasing flake8
* Updating commit ID
* Adding graphing dep
* Update var/spack/repos/builtin/packages/py-markov-clustering/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Update package.py
---------
Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* py-pysftp: add new package
* py-pysftp: correct version
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
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Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Adds the spack recipe for building the pynpm python package
* fix license header
* Update var/spack/repos/builtin/packages/py-pynpm/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
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Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* py-fastremap: new package @1.14.1
* py-pyqtgraph: new package @0.13.3
* py-roifile: new package @2024.1.10
* py-superqt: new package @0.6.1
* cellpose: new package @2.2.3
* Appeasing black ...
* Dropping the cuda variant
* Update var/spack/repos/builtin/packages/py-fastremap/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Adding python version dependency
* Update var/spack/repos/builtin/packages/py-pyqtgraph/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Update var/spack/repos/builtin/packages/py-pyqtgraph/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Update var/spack/repos/builtin/packages/py-roifile/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Update var/spack/repos/builtin/packages/py-superqt/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Adding missing dep & conflict
* Appeasing black
* Adding missing py- prefix for dep
* Switching over to py-pyqt6
* Switching over to py-pyqt6
---------
Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* new builtin package: py-biobb-structure-checking
* Update var/spack/repos/builtin/packages/py-biobb-structure-checking/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* dependencies are also build dependencies
---------
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* new builtin package: py-biobb-io
* Update var/spack/repos/builtin/packages/py-biobb-io/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
---------
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* new builtin package: py-biobb-gromacs
* Update var/spack/repos/builtin/packages/py-biobb-gromacs/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* added setuptools dependency
---------
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Bump up the version for rocm-6.0.2 release
* extend the patches that were created for apps for rocm-6.0.0 and rocm-6.0.2 releases
(but apply hipfft patch for only 6.0.0)
* gitlab: remove requests for unreferenced packages
The packages removed in this commit are not built by any of
our current GitLab CI stacks.
* gitlab: update memory requests for "huge" packages
* gitlab: reduce memory requests for overprovisioned packages
* gitlab: more memory for py-torch (again)
* gitlab: update memory but keep CPU the same
