Commit graph

24427 commits

Author SHA1 Message Date
Tamara Dahlgren
f238835b65
is_system_path: return False if path is None (#28403) 2022-01-17 08:44:10 -07:00
kwryankrattiger
7e3677db6f
Fix issue when propagating cuda with other variant (#28377)
+cuda was hiding propagation of hdf5 and adios2 to paraview
2022-01-17 13:57:43 +01:00
Erik Schnetter
b2f92a1307
mpc: add v1.2.1 (#28307) 2022-01-17 13:49:45 +01:00
Timothy Brown
e17434b9e2
WRF: add the ability to compile with Intel. (#28382) 2022-01-17 13:48:47 +01:00
Luc Berger
6add69d658
Kokkos Kernels: release maintenance (#28409)
1. adding latest release 3.5.0
2. updating cmake requirement to match that of Kokkos
3. adding logic to depend on the right version of Kokkos by default
2022-01-17 12:48:20 +00:00
Eric Brugger
20796b2045
VTK-m: Add testlib variant. (#28324) 2022-01-17 13:43:41 +01:00
Sreenivasa Murthy Kolam
53801f3ebb
deprecate rocm-4.1.0 and older rocm releases (#28395) 2022-01-17 13:08:24 +01:00
eugeneswalker
0f3637e332
nalu-wind: depends on trilinos +gtest (#28414) 2022-01-17 12:55:42 +01:00
Adam J. Stewart
6c4e765f40
Open3D: use Spack-installed 3rd party deps when possible (#28422) 2022-01-17 12:54:22 +01:00
Adam J. Stewart
e7c9f05cd9
miniconda: source conda.sh setup script (#28321) 2022-01-17 12:53:41 +01:00
Adam J. Stewart
5d56a3b306
py-numpy: add v1.22.1 (#28423) 2022-01-17 12:52:43 +01:00
Glenn Horton-Smith
58fd0d859a
net-snmp: add v5.9.1 (#28268) 2022-01-17 12:51:15 +01:00
Hadrien G
f5a2f693dc
acts: add v16.0.0 (#28438) 2022-01-17 04:11:27 -07:00
Mark W. Krentel
905c6973c9
hpcviewer: add v2022.01. (#28425) 2022-01-17 10:15:48 +01:00
Erik Schnetter
350d2da8b9
findutils: ensure __nonnull is defined on macOS (#28316) 2022-01-17 10:14:39 +01:00
Adam J. Stewart
20bccc3843
mesa18: explicitly specify python executable (#28420) 2022-01-17 09:50:44 +01:00
Nils Leif Fischer
624b3a00ff
brigand: only build tests when requested (#28228) 2022-01-17 09:45:34 +01:00
Adam J. Stewart
b93ff6fdff
PyTorch: specify CUDA version incompatibility (#28432) 2022-01-17 09:41:23 +01:00
Adam J. Stewart
5c4a250bf9
NCCL: specify cuda_arch (#28433) 2022-01-17 09:40:38 +01:00
Adam J. Stewart
5e595586a7
zip: add external detection (#28434) 2022-01-17 09:39:17 +01:00
Vanessasaurus
dbb36ef8b1
Fixing pthread-stack-min-fix.patch patch version range (#28437)
pthread-stack-min-fix.patch should no be applied to 1.73.0
See https://github.com/spack/spack/issues/28436
2022-01-17 01:32:11 -07:00
Sebastian Pipping
425995db3e
expat: Add latest release 2.4.3 with security fixes (#28435) 2022-01-16 17:23:02 -07:00
Luc Berger
e093187266
Kokkos: updating package list, maintainers and minimum cmake version (#28410)
* Kokkos: updating package list, maintainers and minimum cmake version
* Kokkos: updating maintainers list

Updating maintainers list to have the correct GitHub handle for Jan.
2022-01-16 11:50:34 -08:00
Christoph Junghans
a817538870
votca: add v2022 (#28431) 2022-01-16 07:50:02 -07:00
Brian Van Essen
b8d159c62d
hwloc: added support to find external (#28348) 2022-01-15 16:44:13 -07:00
Peter Brady
415d662ec0 Fix boost build failures on newer glibc 2022-01-15 14:02:30 -08:00
Peter Brady
30b3cd3b44
chaco: new package (#28342)
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2022-01-15 14:08:18 -07:00
Peter Brady
1dd9238021
chaparral: add new package (#28343) 2022-01-15 14:05:03 -07:00
Nicholas Knoblauch
a5c0a4dca4
Add libdeflate as variant for htslib (#24141) 2022-01-15 10:07:45 -07:00
Sreenivasa Murthy Kolam
ebdf1cb73e
rocm ecosystem: bump version for 4.5.2 release (#28358) 2022-01-15 08:59:15 -07:00
Marcus Boden
9e87a6a4b7
snakemake: add v6.13.1 and new variant (#28393) 2022-01-15 08:56:01 -07:00
Nils Leif Fischer
3f903c49e4
charmpp: use CMake for versions 7.0.0+ (#28401) 2022-01-14 23:56:16 -07:00
Todd Gamblin
93377942d1 Update copyright year to 2022 2022-01-14 22:50:21 -08:00
Todd Gamblin
e3527983ac spack license update-copyright-year now updates the LICENSE-MIT file
`spack license update-copyright-year` was updating license headers but not the MIT
license file. Make it do that and add a test.

Also simplify the way we bump the latest copyright year so that we only need to
update it in one place.
2022-01-14 22:50:21 -08:00
Jen Herting
1422bde25a
kaldi: new version 2021-11-16 (#28154)
* [kaldi] Added version 2021-11-16

* [kaldi] Added logic for new version and when cuda 11 is used

* [kaldi] Added patch file when cuda 11 as cub is now built into it

* [kaldi] removed .999 and simplified some logic

Co-authored-by: Doug Heckman <dahdco@rit.edu>
2022-01-14 23:08:15 -07:00
Chris White
ed105fcc76
New Package: ATS (#28013)
* add py-ats package

* add new 7.0.10 tag

* add myself as a maintainer

* add dependencies for python and setuptools

* style

* added todo for flux

* words

* update versions users should use
2022-01-14 22:32:12 -07:00
Brian Spilner
39f19bcc16
CDO package: add version 2.0.3 (#28416) 2022-01-14 18:53:55 -08:00
Adam J. Stewart
a2181e9d25
Python: add ensurepip variant (#28205) 2022-01-14 20:09:42 -06:00
Adam J. Stewart
6235184522
valgrind: default to ~ubsan (#28389) 2022-01-14 16:29:16 -07:00
Satish Balay
9ed32a3c65
gdbm@1.22: fix build on MacOS (#28379) 2022-01-14 14:02:50 -07:00
Peter Brady
2917aad6f9
scorpio: add new package (#28375)
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2022-01-14 13:47:36 -07:00
Adam J. Stewart
3540f8200a
PythonPackage: install packages with pip (#27798)
* Use pip to bootstrap pip

* Bootstrap wheel from source

* Update PythonPackage to install using pip

* Update several packages

* Add wheel as base class dep

* Build phase no longer exists

* Add py-poetry package, fix py-flit-core bootstrapping

* Fix isort build

* Clean up many more packages

* Remove unused import

* Fix unit tests

* Don't directly run setup.py

* Typo fix

* Remove unused imports

* Fix issues caught by CI

* Remove custom setup.py file handling

* Use PythonPackage for installing wheels

* Remove custom phases in PythonPackages

* Remove <phase>_args methods

* Remove unused import

* Fix various packages

* Try to test Python packages directly in CI

* Actually run the pipeline

* Fix more packages

* Fix mappings, fix packages

* Fix dep version

* Work around bug in concretizer

* Various concretization fixes

* Fix gitlab yaml, packages

* Fix typo in gitlab yaml

* Skip more packages that fail to concretize

* Fix? jupyter ecosystem concretization issues

* Solve Jupyter concretization issues

* Prevent duplicate entries in PYTHONPATH

* Skip fenics-dolfinx

* Build fewer Python packages

* Fix missing npm dep

* Specify image

* More package fixes

* Add backends for every from-source package

* Fix version arg

* Remove GitLab CI stuff, add py-installer package

* Remove test deps, re-add install_options

* Function declaration syntax fix

* More build fixes

* Update spack create template

* Update PythonPackage documentation

* Fix documentation build

* Fix unit tests

* Remove pip flag added only in newer pip

* flux: add explicit dependency on jsonschema

* Update packages that have been added since this was branched off of develop

* Move Python 2 deprecation to a separate PR

* py-neurolab: add build dep on py-setuptools

* Use wheels for pip/wheel

* Allow use of pre-installed pip for external Python

* pip -> python -m pip

* Use python -m pip for all packages

* Fix py-wrapt

* Add both platlib and purelib to PYTHONPATH

* py-pyyaml: setuptools is needed for all versions

* py-pyyaml: link flags aren't needed

* Appease spack audit packages

* Some build backend is required for all versions, distutils -> setuptools

* Correctly handle different setup.py filename

* Use wheels for py-tomli to avoid circular dep on py-flit-core

* Fix busco installation procedure

* Clarify things in spack create template

* Test other Python build backends

* Undo changes to busco

* Various fixes

* Don't test other backends
2022-01-14 12:37:57 -06:00
eugeneswalker
0b2507053e
hsakmt-roct@4.5.0: needs pkgconf (#28400) 2022-01-14 08:38:19 -07:00
Adam J. Stewart
e0f044561e
Python: improve site_packages_dir handling (#28346)
* Python: improve site_packages_dir handling

* Replace all site_packages_dir with purelib/platlib
2022-01-13 20:11:16 -06:00
Adam J. Stewart
2e238307c7
Python: add maintainers for Python 2 (#28386) 2022-01-13 20:05:42 -06:00
Jim Galarowicz
b7accb6a9d
Add new survey package to spack. (#25518)
* Add new package to spack.  survey is a lightweight application performance tool that also gathers system information and stores it as metadata.

* Add maintainer and note about source access.

* Update the man path per spack reviewer suggestion.

* Remove redundant settings for PYTHONPATH, PATH, and MANPATH.

* Move to a one mpi collector approach for cce/tce integration.

* Add pyyaml dependency

* Make further spack reviewer changes to python type specs, mpi args, build type variant.

* Add reviewer requested changes.

* Add reviewer docstring requested changes.

* Add more updates from spack reviewer comments.

* Update the versions to use tags, not branches

* Redo dashes to fix issue with spack testing.

Co-authored-by: Jim Galarowicz <jgalarowicz@newmexicoconsortium.org>
2022-01-13 19:59:05 -06:00
Erik
eda565f3b1
AMReX Smoke Test (#27411) 2022-01-13 17:43:43 +00:00
Andrew W Elble
1ea4497802
musl: set syslibdir correctly, new versions (#28373) 2022-01-13 03:50:11 -07:00
Adam J. Stewart
7d3a696d27
fenics: specify python exe (#28323) 2022-01-12 12:47:21 -07:00
Harmen Stoppels
d74396ad21
Do not initialize config on spack compiler list (#28042)
When `spack compiler list` is run without being restricted to a
particular scope, and no compilers are found, say that none are 
available, and hint that the use should run spack compiler find to 
auto detect compilers.

* Improve docs
* Check if stdin is a tty
* add a test
2022-01-12 16:26:28 +00:00