Mark Olesen
ef2e51571d
ENH: better handling of mpich for openfoam packages
...
- define MPICH_SKIP_MPICXX, link libmpich instead of libmpi
(as per disussion in PR #4990 )
ENH: more flexible editing/patching of openfoam env files
CONFIG: comment out requirement for openmpi+thread_multiple
- was originally slated for the 1712 release and beyond, but there are
reportedly unstable version/network combinations.
Leave as comment for future reference, since it may be arise again.
STYLE: renamed openfoam-site.patch as 1706-site.patch (and reformatted)
- to preserve against impending changes in the layout of
config.{csh,sh}/settings
2017-12-20 11:32:33 -08:00
Mark Olesen
235c3c1025
ENH: improved openfoam module creation (issue #4942 )
...
- post-install module settings for openfoam-com and foam-extend.
2017-12-20 11:32:33 -08:00
Eric
6ea4614dbd
picard: Add version 2.17.0 ( #6729 )
2017-12-20 13:28:37 +01:00
Denis Davydov
ea5f8c7382
octave: add optim and struct packages ( #6733 )
2017-12-20 13:27:50 +01:00
Gregory Lee
241ea77229
sqlite package: apply B0 patch to additional versions ( #6728 )
2017-12-19 11:06:39 -08:00
Denis Davydov
0ef741d291
slepc: add 3.8.2 ( #6724 )
2017-12-19 15:40:30 +01:00
Denis Davydov
e462d39afe
intel-tbb: add 2018.2 ( #6725 )
2017-12-19 15:39:42 +01:00
Denis Davydov
98f220b304
hypre: add 2.13.0 ( #6726 )
2017-12-19 15:39:27 +01:00
Denis Davydov
599094abbd
suite-sparse: add 5.1.0 ( #6727 )
2017-12-19 15:39:12 +01:00
Jack Morrison
720ad57bcd
Added GDB verison 8.0 ( #6704 )
2017-12-19 09:54:18 +01:00
peetsv
d0a10edb67
nextflow: adding version 0.21.0 ( #6722 )
2017-12-19 09:07:33 +01:00
Peter Doak
d4c84be91b
Emacs: added gnutls variant (tested on Centos 7) ( #6711 )
2017-12-19 08:36:54 +01:00
Denis Davydov
69f959ec0b
gmsh: add 3.0.6 ( #6718 )
2017-12-19 08:31:23 +01:00
junkudo
d69d692203
CoinHSL : Prevent CoinHSL from building in parallel ( #6715 )
...
CoinHSL does not seem to be able to be built in parallel. This commit forces serial compilation.
2017-12-19 08:30:39 +01:00
Denis Davydov
548c225d45
dealii: add GMSH, add CMAKE_FIND_APPBUNDLE to CMakePackage ( #6723 )
...
* dealii: add GMSH dependency
* CMakePackage: add CMAKE_FIND_APPBUNDLE to prevent picking up binaries from /Applications
2017-12-19 08:28:55 +01:00
peetsv
e8de22ce46
lftp: adding version 4.6.4 ( #6721 )
2017-12-19 08:19:33 +01:00
Mark Olesen
b3e9192d18
openfoam-org: new version ( #6686 )
...
Add new version with a patch.
2017-12-18 19:47:49 -08:00
peetsv
f7a5a27138
IGV: new package ( #6710 )
2017-12-18 19:37:09 -08:00
Benedikt Riedel
36fa574779
globus-toolkit: add version and openssl dependency ( #6617 )
2017-12-18 15:23:56 -08:00
Douglas Duckworth
d3519af7de
relion - added new stable version 2.1 ( #6706 )
2017-12-18 10:38:20 -08:00
healther
0cff0fba73
fix post install method for py3 in mercurial ( #6497 )
...
* fix post install method for py3 in mercurial
* Update package.py
* Update package.py
* use print_str instead of manual print detection
* Update package.py
* use only depends_on
* Update package.py
* Update package.py
State py3 compatibility for @4.3: according to setup.py from the 4.3.tar.gz from pypi
2017-12-17 12:00:58 -06:00
Sergey Kosukhin
576ef5e2b3
Package 'cdo': get rid of unnecessary dependency on MPI C++ library. ( #6632 )
2017-12-16 19:48:56 -07:00
nshtg
2a639097b0
Add new package signify ( #6645 )
...
OpenBSD tool to sign and verify signatures on files.
See https://github.com/aperezdc/signify
2017-12-16 19:47:59 -07:00
Eric
7d800a0fc2
breseq: Create new package ( #6648 )
2017-12-16 19:47:11 -07:00
fpruvost
6c81cf1a78
build lapacke with tmg ( #6654 )
2017-12-16 19:43:46 -07:00
David Orman
7b8d889d31
bwa: added version 0.7.16a and checksum ( #6658 )
2017-12-16 19:43:02 -07:00
Jack Morrison
d4cc1ac86b
Hadoop: Replace broken url ( #6671 )
2017-12-16 19:42:03 -07:00
David Böhme
3467c207c8
Caliper update, add version 1.6.0 ( #6680 )
2017-12-16 19:39:52 -07:00
Eric
dac09dd5fb
py-bx-python: Create new package ( #6672 )
2017-12-16 19:38:59 -07:00
Eric
d08dc0c019
py-tetoolkit: Create new package ( #6673 )
2017-12-16 19:38:36 -07:00
Eric
d3545ed1b3
py-pandas: add versions 0.19.2 and 0.21.1 ( #6687 )
2017-12-16 19:38:02 -07:00
Paschalis Korosoglou
a69cfd5f78
Add petsc version 3.8.3 ( #6688 )
2017-12-16 19:37:35 -07:00
Paschalis Korosoglou
61dbd3182d
Add clanguage variant for petsc ( #6689 )
2017-12-16 19:37:20 -07:00
Eric
87420dccee
bedtools2: Add version 2.27.1 ( #6693 )
2017-12-16 19:36:35 -07:00
peetsv
5d0e7abcc5
MetaSV: adding new package ( #6691 )
2017-12-16 19:36:11 -07:00
Eric
5539c94e67
PANDAseq: Create new package ( #6694 )
2017-12-16 19:35:48 -07:00
Eric
554d4045fa
DeNovoGear: Create new package ( #6699 )
2017-12-16 19:34:53 -07:00
lingnanyuan
34cf796b54
mefit: Create new package. ( #6700 )
2017-12-16 19:34:30 -07:00
Denis Davydov
f78418d8bb
moltemplate: add new package ( #6702 )
2017-12-16 19:33:28 -07:00
David Orman
176b518d4b
new package: gatk ( #6674 )
2017-12-15 11:00:55 -08:00
Jon Rood
7369ba21bf
new package: Percept ( #6636 )
...
This also adds the 'exception' boost library to the set of default
libraries built by boost.
2017-12-14 18:11:47 -08:00
Douglas Duckworth
1aed3f7c01
added breakdancer ( #6319 )
2017-12-14 14:43:32 -07:00
Massimiliano Culpo
6c1fa37e3d
fftw: added version 3.3.7 ( #6678 )
2017-12-14 21:38:33 +01:00
Jon Rood
b447c2ba51
Add TIOGA package and optional dependency of Nalu on TIOGA ( #6638 )
2017-12-14 11:46:25 -08:00
Scott Wittenburg
ce832fca59
libharu: Make dependencies on zlib and libpng explicit ( #6682 )
2017-12-14 08:58:42 +01:00
Douglas Duckworth
5a66065dfa
relion: add version and cuda arch variant ( #6317 )
...
Add preferred version 2.0.3. Added beta version. Added conflict with
gcc versions >= 5 when building with cuda@8 (which is currently the
only supported cuda version). Added cuda architecture variant. Added
comment about current lack of cuda@9 support.
2017-12-13 10:30:38 -08:00
Denis Davydov
c0aa12111b
tasmanian: add new package ( #6659 )
2017-12-13 16:01:51 +01:00
Axel Huebl
836bf65250
CUDA: 9.1 ( #6663 )
...
Add the latest CUDA release, 9.1
2017-12-13 14:43:40 +01:00
peetsv
2e4c9e47a8
py-pysam: adding old version 0.7.7 ( #6675 )
2017-12-13 09:01:45 +01:00
Eric
5fa9e61321
SPAdes: add version 3.11.1 ( #6668 )
2017-12-13 08:57:29 +01:00
