hlrs-software-stack/spack
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4928 commits

Author SHA1 Message Date
lingnanyuan
eda91bebd7 r-gosemsim: Create new package. (#6352) 2017-11-17 18:58:43 -07:00
lingnanyuan
d836d7e7ea r-do-db: Create new package. (#6353) 2017-11-17 18:58:23 -07:00
lingnanyuan
c604638681 r-fgsea: Create new package. (#6354) 2017-11-17 18:58:01 -07:00
lingnanyuan
5c06255b24 r-clusterprofiler: Create new package. (#6356) 2017-11-17 18:57:40 -07:00
sknigh
1f8f593dd6 Added libhio 1.4.0.0 (#6357) 2017-11-17 18:57:17 -07:00
Brian Homerding
17debcb9b2 NuT: Add Installation of lib and demo app (#6341) 2017-11-16 16:30:42 -07:00
Matthias Vogelgesang
a62f8698c3 Add UFO and dependencies (#6337) 
* Add json-glib

* Add ufo-core

* Add ufo-filters
 2017-11-16 09:37:17 -08:00
healther
ef3c909701 add package py-numba (#6323) 
* add package py-numba

* Update package.py

* Update package.py

* Update package.py
 2017-11-16 10:13:20 -07:00
Audrey Thoma
e941f33eaf meraculous: new package (#6292) 
* meraculous: new package

* adding gcc version conflict

* Update package.py

* Update package.py
 2017-11-16 09:40:46 -07:00
lingnanyuan
bb3d5fd313 r-rhdf5: Create new package. (#6330) 2017-11-16 09:40:15 -07:00
lingnanyuan
e732a554ff r-shortread: Create new package. (#6332) 2017-11-16 09:30:18 -07:00
lingnanyuan
cca06422fa r-sva: Create new package. (#6333) 2017-11-16 09:28:59 -07:00
David Hows
d89b09493c Minor package fixes (#6334) 
* Add no-implicit-fallthrough to MsgpackC

* Add 0.2.1 of Neovim

* Lint
 2017-11-16 09:28:40 -07:00
Stephen Hudson
9d1224e5d8 py-petsc4py: Update version to 3.8.0 and add dependencies (#5792) 
* py-petsc4py: Update version to 3.8.0 and add dependencies

- Added explicit dependency on python and numpy

* Kept old version - and corrected minimal python version

* Update to 3.8.1
 2017-11-15 16:49:36 -07:00
baip
697f3ea71d cp2k: add dependency on smm and libxc & new version 5.1 (#6194) 
* cp2k: add libxsmm dependency

* cp2k: add libxc dependency

* cp2k: add smm variant to select from libxsmm or libsmm

* cp2k: add version 5.1
 2017-11-15 16:49:08 -07:00
Christoph Junghans
7da8a02cbf
git grep --files-with-matches github.com/llnl/spack | xargs sed -i '/github.com/s@llnl/spack@spack/spack@' (#6329) 2017-11-15 16:46:39 -07:00
Denis Davydov
cb5fd6035a intel: add 2018.1 (#6322) 2017-11-15 13:13:15 -07:00
Axel Huebl
d1a733bc86 xtensor, xtl, xsimd (#6315) 
Adds the QuantStack libs (C++, header-only) needed for
xtensor.
 2017-11-15 13:12:31 -07:00
Yifan Zhu
cde0570c56 r-janitor: created new package (#6313) 2017-11-15 13:09:24 -07:00
Yifan Zhu
0d9ab84ebb r-dbplyr: created new package (#6311) 2017-11-15 13:09:11 -07:00
Howard Pritchard
af1b93b3db Open MPI: add 2.0.4 release to package file (#6310) 
Signed-off-by: Howard Pritchard <howardp@lanl.gov>
 2017-11-15 13:03:07 -07:00
健美猫
71f12597a7 Update pgi to 17.10 . (#6306) 2017-11-15 13:02:54 -07:00
Sergey Kosukhin
e77b11674f Update for 'magics' and 'libemos'. (#6275) 2017-11-15 13:01:23 -07:00
Benedikt Riedel
2eb7fabe62 Allow openblas to build on a VM (#6258) 
This adds a "virtual_machine" boolean variant which adds build
options that enable building openblas on a VM.
 2017-11-15 10:32:02 -08:00
Eric
9acf207023 picard: add versions and fix url format (#6309) 2017-11-14 16:41:27 -07:00
Michael Kuhn
ec5d366bcd likwid: Fix hash for 4.3.0 (#6307) 
Prefer 4.2.1 for now because 4.3.0's hash changes regularly.
 2017-11-14 16:41:05 -07:00
健美猫
d9a4e7a038 Update miniconda to 4.3.30. (#6233) 2017-11-14 12:11:53 -08:00
Adam J. Stewart
138e9d08c6 Add the latest version of Lmod (#6297) 2017-11-14 10:32:41 -08:00
koebbe
50957bd44f py-h5py: make sure to depend on the hl variant of hdf5 (#6304) 2017-11-14 09:26:58 -07:00
vishalkenchan
0692029273 update trilinos checksums (#6301) 2017-11-14 09:22:34 -07:00
Michael Kuhn
aa27432a1d ncl: Check for ncl binary after installation (#6298) 
ncl's build system will happily continue in case of errors, which might
result in the ncl binary not being built.
 2017-11-14 09:22:04 -07:00
Michael Kuhn
e31b997162 icu4c: Update to 60.1 (#6295) 
Previous versions try to include xlocale.h, which fails on glibc >= 2.26.
 2017-11-14 09:21:35 -07:00
Yifan Zhu
a8f9182ef3 r-forcats: created new package (#6291) 2017-11-14 09:21:21 -07:00
Michael Kuhn
93bca2f3a2 libbson, libmongoc: Update to 1.8.1 (#6290) 2017-11-14 09:21:05 -07:00
Eric
137a9e64ac trimgalore: add version 0.4.5 (#6288) 2017-11-14 09:20:20 -07:00
Yifan Zhu
392e25b7e6 r-mnormt: created new package (#6287) 2017-11-14 09:20:06 -07:00
Yifan Zhu
05eb287ed9 r-bindr: created new package (#6285) 2017-11-14 09:19:49 -07:00
Yifan Zhu
c042644b53 r-glue: created new package (#6283) 2017-11-13 16:25:52 -07:00
Douglas Duckworth
c7d2b4dbd6 relion 2.1 - update variant defaults (#6201) 
Default precision should be double for CPU. Generally users also want
to use GPUs so the +cuda variant is now also enabled by default.
 2017-11-13 12:29:43 -08:00
Christoph Junghans
bde727e187
mpibash: move to autotools (#6253) 2017-11-13 10:48:31 -07:00
Christoph Junghans
02335fa849
ucx: initial commit (#6265) 2017-11-13 10:47:58 -07:00
Eric
306aca812d ont-albacore: add version 2.1.2 (#6278) 2017-11-13 10:47:40 -07:00
Satish Balay
6fd92e4257 petsc: update to version 3.8.2 (#6244) 
Includes pkgconfig fix [for mfem static build failure]
 2017-11-11 07:16:03 -07:00
Brian Homerding
19f8940c01 Nekbone: Installing data files for example runs (#6243) 
* Nekbone: Installing data files for example runs

* Typo Fix
 2017-11-10 19:59:33 -07:00
Sergey Kosukhin
263126bc5d Create symlink for 'swig' binary after installation. (#6240) 2017-11-10 19:50:11 -07:00
Aaron Fisher
af06ea0e74 Fixed mfem mpi build issue. (#6254) 
* Fixed mfem mpi build issue.

* Fixed a non-mpi build issue and switched to the latest official MFEM release.
 2017-11-10 19:49:17 -07:00
Yifan Zhu
e38f31e773 feature/r-reprex: new package (#6257) 2017-11-10 19:47:21 -07:00
Cyrus Harrison
b079e1dbd5 add alpine ascent (#6224) 
* add ascent package and and deps

* proper use of site_packages_dir prop

* flake8

* add maitain, small updates

* flake8

* flake8

* fixs for docstrings for sphinx
 2017-11-10 17:00:47 -08:00
becker33
917d021997 Add version 1.04 (#6259) 2017-11-10 15:52:48 -08:00
becker33
a7b817b494 elfutils: add --no-as-needed flag for library ordering issue (#6256) 
* add --no-as-needed flag for library ordering issue libelf

* fix syntax error.
 2017-11-10 11:42:37 -08:00