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meraculous: new package (#6292)

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* meraculous: new package

* adding gcc version conflict

* Update package.py

* Update package.py
This commit is contained in:
Audrey Thoma 2017-11-16 10:40:46 -06:00 committed by Christoph Junghans
parent bb3d5fd313
commit e941f33eaf
2 changed files with 84 additions and 0 deletions
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##############################################################################
# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/spack/spack
# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class Meraculous(CMakePackage):
"""Meraculous is a while genome assembler for Next Generation Sequencing
data geared for large genomes."""
homepage = "http://jgi.doe.gov/data-and-tools/meraculous/"
url = "https://downloads.sourceforge.net/project/meraculous20/Meraculous-v2.2.4.tar.gz"
version('2.2.4', '349feb6cb178643a46e4b092c87bad3a')
depends_on('perl', type=('build', 'run'))
depends_on('boost@1.5.0:')
depends_on('gnuplot@3.7:')
depends_on('perl-log-log4perl', type=('build', 'run'))
conflicts('%gcc@6.0.0:', when='@2.2.4')
def patch(self):
edit = FileFilter('CMakeLists.txt')
edit.filter("-static-libstdc\+\+", "")
def setup_environment(self, spack_env, run_env):
run_env.set('MERACULOUS_ROOT', self.prefix)
run_env.prepend_path('PERL5LIB', self.prefix.lib)

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##############################################################################
# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/spack/spack
# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for more details.
#
# You should have received a copy of the GNU Lesser General Public
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *
class PerlLogLog4perl(PerlPackage):
"""Log4j implementation for Perl"""
homepage = "http://search.cpan.org/~mschilli/Log-Log4perl-1.44/lib/Log/Log4perl.pm"
url = "https://github.com/mschilli/log4perl/archive/rel_146.tar.gz"
version('146', '500abbd978ed326cfe5367dc4f9f3be2')