Commit graph

25784 commits

Author SHA1 Message Date
Andrea Valenzuela
ec266a86b6
Add checksum for py-prettytable@3.2.0 (#30329)
* Add checksum for py-more-itertools@8.12.0 and fix python dependency

* Add checksum for py-prettytable@3.2.0

* Package version 8.11.0 is the only version that requires python 3.6+

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Add reference to python@3.6 support when 8.11

* Revert "Add reference to python@3.6 support when 8.11"

This reverts commit 0ba00021936568a8007b7644fa8dfb031a3ad044.

* Add python 3.7: requirement

* Revert range for python 3.6

* Revert py-more-itertools modifications

Co-authored-by: aandvalenzuela <andrea.valenzuela.ramirez@cern.ch>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2022-04-29 10:33:04 -05:00
Jennifer Green
ecbac17217
htop: new variants (#30398)
* htop variants for debug, hwloc, unicode support

* removed redundant ncurses dep
2022-04-29 08:42:42 -06:00
Erik Schnetter
43a84f58e9
libjpeg: New version 9e (#30365) 2022-04-29 06:46:34 -06:00
Harmen Stoppels
9ed37742e9
squashfs: new version, deprecated older versions (#30361) 2022-04-29 11:17:44 +02:00
Harmen Stoppels
dbe2c44a25
netcdf-fortran: add compat bound for netcdf-c (#30358) 2022-04-29 11:16:51 +02:00
luker
f40780310b
CrayPE_binutils package fix for CCE (#30338) 2022-04-29 09:36:52 +02:00
Massimiliano Culpo
c06f69d0bf
spack.yaml: add concretizer.yaml to the schema (#30376) 2022-04-29 01:06:36 -06:00
Sinan
8a6b73bb2c
package/kealib: add libs property (#30391)
Co-authored-by: sbulut <sbulut@3vgeomatics.com>
2022-04-29 02:38:19 +00:00
lpoirel
9e6298569e
Delocalize type output for bash completion (#30360) 2022-04-28 23:24:10 +00:00
Sergey Kosukhin
ad0430f463
netcdf-fortran: do not build with MPI wrappers (#30371) 2022-04-29 01:19:42 +02:00
Erik Schnetter
7d26d56e59
meson: New version 0.62.1 (#30367) 2022-04-28 14:26:36 -06:00
Erik Schnetter
06988c38fd
reprimand: New version 1.4 (#30369) 2022-04-28 12:58:11 -07:00
kwryankrattiger
f6d2b07368
SDK: Require paraview@5.10: in the ECP SDK (#30372)
* SDK: Require paraview@5.10: in the ECP SDK

* SDK: Updated dev src conflicts to be more explicit
2022-04-28 13:38:42 -06:00
Peter Scheibel
bb43308c44
Add command for reading JSON-based DB description (now with more tests) (#29652)
This is an amended version of https://github.com/spack/spack/pull/24894 (reverted in https://github.com/spack/spack/pull/29603). https://github.com/spack/spack/pull/24894
broke all instances of `spack external find` (namely when it is invoked without arguments/options)
because it was mandating the presence of a file which most systems would not have.
This allows `spack external find` to proceed if that file is not present and adds tests for this.

- [x] Add a test which confirms that `spack external find` successfully reads a manifest file
      if present in the default manifest path

--- Original commit message ---

Adds `spack external read-cray-manifest`, which reads a json file that describes a
set of package DAGs. The parsed results are stored directly in the database. A user
can see these installed specs with `spack find` (like any installed spec). The easiest
way to use them right now as dependencies is to run
`spack spec ... ^/hash-of-external-package`.

Changes include:

* `spack external read-cray-manifest --file <path/to/file>` will add all specs described
  in the file to Spack's installation DB and will also install described compilers to the
  compilers configuration (the expected format of the file is described in this PR as well including examples of the file)
* Database records now may include an "origin" (the command added in this PR
  registers the origin as "external-db"). In the future, it is assumed users may want
  to be able to treat installs registered with this command differently (e.g. they may
  want to uninstall all specs added with this command)
* Hash properties are now always preserved when copying specs if the source spec
  is concrete
  * I don't think the hashes of installed-and-concrete specs should change and this
    was the easiest way to handle that
  * also specs that are concrete preserve their `.normal` property when copied
    (external specs may mention compilers that are not registered, and without this
    change they would fail in `normalize` when calling `validate_or_raise`)
  * it might be this should only be the case if the spec was installed

- [x] Improve testing
- [x] Specifically mark DB records added with this command (so that users can do
      something like "uninstall all packages added with `spack read-external-db`)
  * This is now possible with `spack uninstall --all --origin=external-db` (this will
    remove all specs added from manifest files)
- [x] Strip variants that are listed in json entries but don't actually exist for the package
2022-04-28 10:56:26 -07:00
Massimiliano Culpo
6a9df34abd
ASP-based solver: discard unknown packages from reuse (#30357)
* ASP-based solver: discard unknown packages from reuse

This is an add-on to #28259 that cover for the case of
a single package.py being removed from a repository,
rather than an entire custom repository being removed.

* Add unit test
2022-04-28 10:40:28 -07:00
Frédéric Simonis
1006dd54de
Add BUILD_TESTING to standard CMake arguments (#30374)
CTest determines whether to enable tests using the BUILD_TESTING variable.
This should be used by projects to conditionally enable the compilation of tests.
Spack knowns which packages have to run tests and can thus automatically define this variable.
2022-04-28 17:03:13 +00:00
Andrea Valenzuela
cf905ec14a
Add checksum for py-poetry-core@1.0.8 (#30359)
Co-authored-by: aandvalenzuela <andrea.valenzuela.ramirez@cern.ch>
2022-04-28 11:24:08 -05:00
Andrea Valenzuela
19bb4bdeb8
Add checksum for py-more-itertools@8.12.0 and fix python dependency (#30325)
* Add checksum for py-more-itertools@8.12.0 and fix python dependency

* Package version 8.11.0 is the only version that requires python 3.6+

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Add reference to python 3.6 dependency

Co-authored-by: aandvalenzuela <andrea.valenzuela.ramirez@cern.ch>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2022-04-28 10:23:10 -06:00
Andrew Davison
47f9e71302
py-quantities: add versions from 0.12.2-13.0 (#28586)
* py-quantities: add versions from 0.12.2-13.0

* Attempt to fix the version specification

* add maintainer, implement suggestions from reviewer
2022-04-28 11:14:50 -05:00
Chris White
2e9da47a2d
Ascent/Conduit: re-add fortran compiler that was mistakenly removed (#30351) 2022-04-28 07:09:40 -07:00
Greg Becker
3e863848f8
build_env/test_env: add concretizer args (#30289) 2022-04-28 11:37:15 +02:00
Harmen Stoppels
e7a0b952ab
install --overwrite: use rename instead of tmpdir (#29746)
I tried to use --overwrite on nvhpc, but nvhpc's install size is 16GB. Seems
better to do os.rename in the same directory than moving the directory to
`/tmp`.

- [x] install --overwrite: use rename instead of tmpdir
- [x] use tempfile
2022-04-28 01:42:42 -06:00
Patrick Broderick
8b85b33ba5
Add spiral fftx (#28583)
* add fftx package; rename spiral to spiral-software and add spiral-package-*
* Update year in copyright notice
* Add package description to FFTX/package.py
* Changes to package files for SPIRAL & FFTX for PR
* Update package definitions
* remove unnecessary lines
2022-04-27 22:26:44 -07:00
Larry Knox
90dafdd9f0
Add HDF5 version 1.12.2. (#30348) 2022-04-27 22:50:28 -06:00
Paul R. C. Kent
d989478154
llvm: Add 14.0.1 14.0.2 (#30347) 2022-04-27 20:22:40 -06:00
Wileam Y. Phan
ebd930ace9
Add Python chmod +x equivalent in fpm package (#30342) 2022-04-28 00:16:19 +00:00
Erik Schnetter
53e0e7aabe
z3: New version 4.8.16 (#30328) 2022-04-27 17:10:15 -07:00
dlkuehn
27cbc4ebc8
tcsh: add version 6.24.00 (#30346)
Co-authored-by: David Kuehn <las_dkuehn@iastate.edu>
2022-04-27 23:43:06 +00:00
Asher Mancinelli
2515cafb9c
hiop: Enable barebones testing (#30313)
* Enable barebones testing

Run 6 test cases representative of the entire HiOp test suite.

* Apply style changes

* Dont use unpacking for py2 compat
2022-04-27 23:08:33 +00:00
Annop Wongwathanarat
5593611b5e
armpl: add new package (#30305)
Co-authored-by: Annop Wongwathanarat <annop.wongwathanarat@arm.com>
2022-04-27 15:25:47 -07:00
dlkuehn
f544b051c4
orthofinder: add version 2.5.4 (#30344)
Co-authored-by: David Kuehn <las_dkuehn@iastate.edu>
2022-04-27 22:23:34 +00:00
Luc Berger
c534e70950
Kokkos: update package for release 3.6.00 (#30315) 2022-04-27 13:52:15 -07:00
Paul Ferrell
9ffb3b4ac0
mvapich2 MPI_ROOT needed in modules (#30335)
We've found that when using mvapich2 via modules, we need to set the MPI_ROOT
environment variable.
2022-04-27 13:41:06 -07:00
kwryankrattiger
893c5271ac
Update ascent and deps for 0.8.x (#29954)
* Update package versions for Ascent/SDK

* Umpire build static for cuda from dray

* Propagate cuda_arch for ascent and dray packages.

* Ascent: Update dependency versions for ascent@0.8:

* VTK-h: Patch +shared+cuda for VTK-h 0.8.x

* Ascent: Patch to allow @0.8: +shared+cuda

* Turn off building ascent tests.

* Update ascent patch

* WIP: Ascent: Update patch to configure MPI build with CUDA

* Ascent: Tests require vtk-m+testlib

* WIP: Ascent: Constrain 0.7 for vtk-h

* Ascent: Directly depend on VTK-m
2022-04-27 13:39:18 -06:00
eugeneswalker
f7a9456553
e4s ci: uncomment umpire (#29776) 2022-04-27 18:22:46 +00:00
kwryankrattiger
8250235207
Mesa: Constrain compatible LLVM version (#30102)
Base on release date, not actual compatibility, because LLVM
version compatibility is not documented clearly in Mesa for
upper version limits.
2022-04-27 12:03:02 -06:00
Lucas Frérot
eb51591b02
SCons: added versions 4.0.0-4.3.0 (#30296)
* SCons: added versions 4.0.0-4.3.0

* scons: correct package name casing in url_for_version
2022-04-27 11:08:30 -05:00
Brian Van Essen
06e7249850
Allow PyTorch to forward gcc-toolchain cxxcflag to CUDA toolchains (#30318) 2022-04-27 10:48:06 -05:00
Martin Diehl
c4ad003af2
damask-*: add v3.0.0alpha6 (#30124) 2022-04-27 16:01:36 +02:00
dependabot[bot]
1243717012
build(deps): bump actions/checkout from 2 to 3.0.2 (#30235)
Bumps [actions/checkout](https://github.com/actions/checkout) from 2 to 3.0.2.
- [Release notes](https://github.com/actions/checkout/releases)
- [Changelog](https://github.com/actions/checkout/blob/main/CHANGELOG.md)
- [Commits](https://github.com/actions/checkout/compare/v2...2541b1294d2704b0964813337f33b291d3f8596b)

---
updated-dependencies:
- dependency-name: actions/checkout
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2022-04-27 13:47:50 +02:00
snehring
da3d315cba
blat: add v37 (#30166) 2022-04-27 12:26:57 +02:00
Michael Kuhn
48ff4c7679
rust: add 1.60.0 and fix libgit2 incompatibility (#30123) 2022-04-27 12:22:52 +02:00
liuyangzhuan
9fc6494a28
Added GPTune v3.0.0 and its dependency py-pymoo (#30119) 2022-04-27 12:21:44 +02:00
Valentin Volkl
9d4cedac51
tauola: fix ~lhapdf (#30190) 2022-04-27 12:16:08 +02:00
Derek Ryan Strong
f66139dfe4
Add fix for binutils 2.38 +gas makeinfo issue (#30209)
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2022-04-27 12:11:48 +02:00
nfurmento
79e0a3dad0
Starpu and Fxt: new packages (#29285) 2022-04-27 12:10:09 +02:00
dependabot[bot]
3dbbf3a101
build(deps): bump codecov/codecov-action from 3.0.0 to 3.1.0 (#30234)
Bumps [codecov/codecov-action](https://github.com/codecov/codecov-action) from 3.0.0 to 3.1.0.
- [Release notes](https://github.com/codecov/codecov-action/releases)
- [Changelog](https://github.com/codecov/codecov-action/blob/master/CHANGELOG.md)
- [Commits](e3c560433a...81cd2dc814)

---
updated-dependencies:
- dependency-name: codecov/codecov-action
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>

Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2022-04-27 11:26:19 +02:00
Harmen Stoppels
f273e7d329
openmpi: add toggle for rsh plm (#30251)
By default `openmpi` needs `rsh` from `openssh`, which is a somewhat
redundant dependency for clusters using slurm. This PR adds a toggle to
allow users to disable the ssh/rsh plm altogether.
2022-04-27 11:15:48 +02:00
snehring
351072cd9f
gcta: rework package recipe (#30286) 2022-04-27 08:56:31 +00:00
Adam J. Stewart
0b23f1be05
py-pil: deprecate package (#30308) 2022-04-27 02:34:29 -06:00