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Author SHA1 Message Date
Gregory L. Lee
e0fbf14f99 consolidated f2py regex 2016-06-21 09:23:58 -07:00
Gregory L. Lee
8f3954c1bd flake 8 fixes for cairo, freetype, and harfbuzz 2016-06-21 08:47:22 -07:00
Gregory L. Lee
4041f45b6c fixed conflicts in python package 2016-06-21 08:47:11 -07:00
Todd Gamblin
f18e1a9371 Merge branch 'features/cantera' of https://github.com/adamjstewart/spack into adamjstewart-features/cantera 2016-06-20 23:53:48 -07:00
Glenn Johnson
77cd474a2d Make all packages lowercase. 2016-06-20 20:10:44 -05:00
alalazo
b86e3047f3 openmpi : revert part of #1079 (OpenMPI can be built without fortran) 
Building OpenMPI without fortran is possible, and was already handled.
 Raising an install error we effectively renounce at clang+OpenMPI.

 build_environment : sets 'CC', 'CXX', and similar variables only if a compiler is found
 2016-06-20 20:46:11 +02:00
Todd Gamblin
f74d4b0660 Merge pull request #1052 from adamjstewart/features/psi4 
Add Psi4 Package
 2016-06-20 10:49:45 -07:00
Todd Gamblin
9b299cb2bb Merge pull request #1023 from epfl-scitas/packages/mumps 
Corrected the shared libraries and tests in mumps package
 2016-06-20 10:48:12 -07:00
Todd Gamblin
cec283f608 Merge pull request #1059 from epfl-scitas/packages/mpi_wrappers_with_rpath 
MPI : have wrappers set RPATH instead of RUNPATH
 2016-06-20 10:47:24 -07:00
Todd Gamblin
c2d0870924 Merge pull request #1063 from eschnett/eschnett/openmpi-1.10.3 
Update OpenMPI to 1.10.3
 2016-06-20 10:45:56 -07:00
Todd Gamblin
31bb47356f Merge pull request #1022 from glennpj/r-devtools 
new package: r-devtools
 2016-06-20 10:34:23 -07:00
Todd Gamblin
b3881701c5 Merge pull request #1021 from glennpj/packrat 
new package: r-packrat
 2016-06-20 10:33:55 -07:00
Todd Gamblin
0fbd2fe224 Merge pull request #1000 from glennpj/new_R 
Add version 3.3.0 of R and extensions
 2016-06-20 10:33:43 -07:00
Todd Gamblin
c09111bbef Merge pull request #1053 from davydden/pkg/dealii_suite_update 
update Petsc, Slepc, Trilinos, Superlu-dist and deal.II
 2016-06-20 10:32:52 -07:00
Todd Gamblin
8047edfb56 Merge pull request #1029 from adamjstewart/features/armadillo 
Add Armadillo and SuperLU packages
 2016-06-20 10:29:29 -07:00
Todd Gamblin
265b9bcb0f Merge pull request #1076 from JRWynneIII/ferret 
Added spec to build Ferret
 2016-06-20 10:28:42 -07:00
Adam J. Stewart
c9eb5f8173 Use non-checksummed PyPi download URLs 2016-06-20 12:24:45 -05:00
Adam J. Stewart
7e1ee463ca Install examples for sundials 2016-06-20 12:24:45 -05:00
Adam J. Stewart
81ac3b62fc Filter compilers and link boost properly 2016-06-20 12:24:45 -05:00
Adam J. Stewart
a21e845ce7 Flake8 2016-06-20 12:24:45 -05:00
Adam J. Stewart
2220784eda Add scons support, .zip support, and Cantera package 2016-06-20 12:24:45 -05:00
Todd Gamblin
12b9d6da10 Merge pull request #1083 from robertdfrench/tmux-2.2 
Tmux 2.2
 2016-06-20 09:36:55 -07:00
Robert.French
83b0c16728 Tmux 2.2 with PEP8 
Tmux 2.2

Provide variant to skip utempter

Remove utempter variant; 2.2 doesn't need it

Flake8ify
 2016-06-20 16:26:49 +00:00
Denis Davydov
cf4a34c657 openmpi: raise an error without Fortran compiler 2016-06-19 11:59:29 +02:00
Denis Davydov
1cc04cff27 openblas: raise an error without Fortran compiler 2016-06-19 11:59:10 +02:00
Adam J. Stewart
652a5eb592 Allow py-pillow to link to Spack-built libraries 2016-06-17 18:09:03 -05:00
Todd Gamblin
62b2f2a7c9 Merge pull request #1065 from epfl-scitas/packages/espresso_update 
espresso : update to 5.4.0
 2016-06-17 14:51:45 -07:00
Todd Gamblin
9a8d109650 Merge pull request #1044 from adamjstewart/features/sncosmo 
Add py-sncosmo package
 2016-06-17 14:50:37 -07:00
Todd Gamblin
0bbbfc2ef7 Merge pull request #946 from LLNL/features/intel2 
Intel software packages and license enhancements
 2016-06-17 14:28:39 -07:00
Adam J. Stewart
536fa73d5f Python flake8 overhaul 2016-06-17 13:33:09 -05:00
Robert D. French
448f8c43d4 Added working Ferret spec 
Fixed ferret spec. It builds now

Made ferret spec more flake8-y

Fixed homepage and info text about Ferret

Removed vim swap file

Reverted changes to netcdf-fortran spec and added netcdf~mpi dependency to ferret spec to compensate for it

Fixed flake8 issues!
 2016-06-17 14:23:50 -04:00
Adam J. Stewart
80d444624b Fix activation of sites.py for sncosmo 2016-06-17 11:08:16 -05:00
Adam J. Stewart
24f65c502e Add additional Astropy dependencies 2016-06-17 10:45:10 -05:00
Adam J. Stewart
b2aa78d6ab Remove version constraints 2016-06-17 10:45:10 -05:00
Adam J. Stewart
4eeaff175c Allow packages to build 2016-06-17 10:44:28 -05:00
Adam J. Stewart
a660c60eb1 Add py-sncosmo package 2016-06-17 10:43:34 -05:00
Glenn Johnson
8970785d33 Add 'jdk' as a dependency. 
Add jdk as a dependency so that R has support for java and allow
packages that need java to work.
 2016-06-16 23:08:55 -05:00
Glenn Johnson
a813f03955 Add list_url for old versions. 2016-06-16 23:08:55 -05:00
Glenn Johnson
4850b9d4d1 Make install comment consistent with actual call. 2016-06-16 23:08:55 -05:00
Glenn Johnson
7da405e630 Add validator for bioconductor packages 
This commit adds a validator function to make sure the versions of R and
bioconductor are in sync.
 2016-06-16 23:08:55 -05:00
Glenn Johnson
7213b12324 Tweak how R packages are built. 
Add bzip2 as a dependency to base R.

Switch from installing the R packages from tar files to installing from
the extracted directory. This is more in line with a standard install
and also allows installing from VCS.

Use the Bioconductor version for BiocGenerics and future Bioconductor
packages. Suffix the package with 'bioc-$version' to indicate which
Bioconductor release the package is a part of. This is actually more
important than the actual version attached to individual packages
although those are subject to change within the Bioconductor branch.
 2016-06-16 23:08:55 -05:00
Glenn Johnson
0e64c25ffc Fix flake8 errors 
Use Bioconductor provided Short URL for homepage in BiocGenerics.
Wrap description text for utf variant in pcre.
 2016-06-16 23:08:54 -05:00
Glenn Johnson
37dc13edaf Update version of BiocGenerics 
The BioConductor repositories only keep the most recent version so this
has to be bumped.
 2016-06-16 23:08:54 -05:00
Glenn Johnson
8704a4ed35 Use configure_args rather than options 
Replaced 'options' with 'configure_args'. That seems like a better name
and is consistent with the packaging guide.
 2016-06-16 23:08:54 -05:00
Glenn Johnson
fe256870b4 Add variant for UTF support to pcre 
This will build PCRE with UTF support by default. That seems to be
reasonable for most environments.
 2016-06-16 23:08:54 -05:00
Glenn Johnson
cb3505769b Clean up R extensions 
Run the existing R extension packages through autopep8 to clean up.
 2016-06-16 23:07:13 -05:00
Glenn Johnson
6649f9edc2 Add version 3.3.0 of R 
This commit adds the 3.3.0 version of R and adds dependencies on curl
and pcre.
 2016-06-16 23:07:13 -05:00
Glenn Johnson
64acbbfcf0 Clean up R package files 
- remove unused imports
- apply pep8
- reformat text strings
 2016-06-16 23:07:13 -05:00
Todd Gamblin
9ee6cbfb40 Merge pull request #944 from adamjstewart/features/bertini 
Add bertini package
 2016-06-16 16:57:50 -07:00
Todd Gamblin
344280154a Merge pull request #962 from adamjstewart/features/hpl 
Add HPL benchmark package
 2016-06-16 16:57:24 -07:00
Todd Gamblin
88b73bacdb Merge branch 'features/newarch' into develop 
Conflicts:
	lib/spack/spack/config.py
	var/spack/repos/builtin/packages/lua/package.py
 2016-06-16 03:03:26 -07:00
alalazo
a1cbb73f8b qa : fixed flake8 issues 2016-06-16 11:24:18 +02:00
alalazo
8d9ffcf565 espresso : updated to 5.4.0, added Parallel=False 2016-06-16 11:22:26 +02:00
Todd Gamblin
76dfaa71a7 fix up packages for new architecture. 2016-06-16 01:47:20 -07:00
Todd Gamblin
40d25d9062 Add libxcb dependencies. Fix up packages to get py-basemap and stat to build. 2016-06-16 00:56:53 -07:00
Erik Schnetter
a7ab064a9e Update OpenMPI to 1.10.3 2016-06-15 18:05:23 -04:00
Massimiliano Culpo
daa46105a7 mpich based providers : shortened filter_compilers 2016-06-15 21:37:12 +02:00
Adam J. Stewart
44e188f111 Remove MPI support, fix INCLUDE filters 2016-06-15 14:17:30 -05:00
Adam J. Stewart
7b97ea248a More template filtering 2016-06-15 14:17:29 -05:00
Adam J. Stewart
9cf1257be4 Filter compilers 2016-06-15 14:17:29 -05:00
Adam J. Stewart
deb4f919cf Psi4 tweaks 2016-06-15 14:17:29 -05:00
Adam J. Stewart
9d99042fed Add Psi4 package 2016-06-15 14:17:29 -05:00
Denis Davydov
0e04e65ae0 trilinos: specify superlu-dist version dependency 2016-06-15 18:44:59 +02:00
Denis Davydov
5fe531050c flake8 fixes for dealii 2016-06-15 18:33:34 +02:00
Denis Davydov
e76083205f flake8 fixes for slepc 2016-06-15 18:33:08 +02:00
Denis Davydov
6390acc660 flake8 fixes for petsc 2016-06-15 18:32:42 +02:00
Denis Davydov
6d714e4425 flake8 fixes for superlu-dist 2016-06-15 18:31:39 +02:00
Denis Davydov
d0d83cfe1e slepc: build by default with Arpack 2016-06-15 18:21:13 +02:00
Denis Davydov
d04dc8440f dealii: specify petsc/slepc version dependencies 2016-06-15 18:21:13 +02:00
Denis Davydov
4d40f86bd3 trilinos: add 12.6.2 and 12.6.3 2016-06-15 18:21:13 +02:00
Denis Davydov
5358ffbe5a slepc: add 3.6.3 and 3.7.1; specify petsc version dependency 2016-06-15 18:21:13 +02:00
Denis Davydov
9ceb8fea78 petsc: add 3.6.4 and 3.7.2; specify superlu-dist version dependency 2016-06-15 18:21:13 +02:00
Denis Davydov
a860a3d614 superlu-dist: avoid harcoding blas/lapack/mpi; remove preferred version 2016-06-15 18:21:13 +02:00
Todd Gamblin
c803f7ae98 Merge pull request #1045 from eschnett/eschnett/openmpi-verbs-usr 
Do not pass "/usr" or "/usr/local" as path to configure
 2016-06-15 09:06:12 -07:00
Todd Gamblin
4ede87a8b0 Merge pull request #1058 from eschnett/eschnett/blosc 
Add packages c-blosc and hdf5-blosc
 2016-06-15 09:04:48 -07:00
Todd Gamblin
9dd1f2747a Merge pull request #1028 from JRWynneIII/boost-graph-parallel-fix 
Add variant for boost graph and parallel graph
 2016-06-15 09:03:01 -07:00
Todd Gamblin
08badb5a35 Merge pull request #1040 from KineticTheory/pkg-trilinos 
Make Boost an optional feature of Trilinos.
 2016-06-15 08:57:38 -07:00
Todd Gamblin
ff3469385b Merge pull request #1037 from KineticTheory/develop 
Package serf also depends on zlib.
 2016-06-15 08:57:14 -07:00
Todd Gamblin
bfedeadacb Merge pull request #1031 from opoplawski/pcre 
Add patch to compile pcre with Intel 16.0.3 compiler
 2016-06-15 08:56:53 -07:00
alalazo
b09bee8158 qa : fixed flake8 issues 2016-06-15 13:29:30 +02:00
alalazo
b59d4f243b openmpi, mvapich2, mpich : filtered out "--Wl,--enable-new-dtag" in wrappers, as it turns RPATH into RUNPATH 
Apart from that turned `os.path.join` into `join_path` and `os.environ` into `env` in the packages
 2016-06-15 13:21:39 +02:00
Erik Schnetter
05d7378da5 Install shared libraries correctly on Linux 2016-06-14 17:13:20 -04:00
Erik Schnetter
ca5180f7a2 Correct Blosc install on Darwin 2016-06-14 17:03:00 -04:00
Erik Schnetter
e6ec372926 Add packages c-blosc and hdf5-blosc 
c-blosc provides the Blosc compression filter, and hdf5-blosc provides a plugin for HDF5 to use that filter.
 2016-06-14 09:59:48 -04:00
Glenn Johnson
e226837d33 Fix flake8 error. 2016-06-13 23:04:26 -05:00
Glenn Johnson
8861c99333 New package - r-foreign 2016-06-13 22:50:07 -05:00
Glenn Johnson
5ba5ef6c46 Add list_url for older versions. 2016-06-13 17:50:27 -05:00
Glenn Johnson
94d0f21823 New package - r-xlsxjars 2016-06-13 17:50:06 -05:00
Glenn Johnson
4767185082 New package - r-xlsx 2016-06-13 17:48:59 -05:00
Glenn Johnson
5cd09af066 New package - r-XLConnect 2016-06-13 17:48:44 -05:00
Glenn Johnson
3c234a7d3b New package - r-XLConnectJars 2016-06-13 17:36:50 -05:00
Glenn Johnson
450b082daf Do not need to depend on jdk here because R itself does. 2016-06-13 17:35:35 -05:00
Glenn Johnson
427fa7fd0a New package - rJava 2016-06-13 17:26:01 -05:00
David Boehme
52160bff18 Use https for github 2016-06-13 11:47:28 -07:00
Glenn Johnson
d398ebe21f New package - r-RSQLite 2016-06-12 22:06:06 -05:00
Glenn Johnson
b96b32e9ec New package - r-RPostgreSQL 2016-06-12 22:05:45 -05:00
Glenn Johnson
77e8096a6f New package - r-RODBC 2016-06-12 22:05:26 -05:00
Glenn Johnson
bfb0985c38 New package - r-RMySQL 2016-06-12 22:05:10 -05:00
Glenn Johnson
a7a640bfb8 New package - rDBI 2016-06-12 22:04:37 -05:00
Glenn Johnson
b05a565648 New package - mariadb 2016-06-12 22:04:09 -05:00
Glenn Johnson
5d3965c7a6 New package - unixODBC 2016-06-12 22:03:24 -05:00
Glenn Johnson
7727f6fc7e New package - libaio 2016-06-12 22:02:46 -05:00
Glenn Johnson
4dcb15cf6d Ran through autopep8 and cleaned up. 2016-06-12 22:00:49 -05:00
Glenn Johnson
bdb9af63ed Add version 9.5.3 and add readline as a dependency. 2016-06-12 21:58:41 -05:00
Glenn Johnson
8ff7cbb9ce Run binutils/package.py through autopep8. 2016-06-12 21:57:03 -05:00
Glenn Johnson
1601cf1b14 Patch binutils 
This commit adds a patch to update symbol versions from linker scripts.
This is seen with libmysqlclient.so which has to maintain compatibility
across two versions. Only one can be the default.

https://sourceware.org/git/gitweb.cgi?p=binutils-gdb.git;a=commitdiff;h=544ddf9322b1b83982e5cb84a54d084ee7e718ea
 2016-06-12 21:46:11 -05:00
Kelly (KT) Thompson
31d2c38687 Update formatting to meet code style requirements. 2016-06-12 19:56:29 -06:00
Kelly (KT) Thompson
b89bcdff62 Make Boost an optional feature of Trilinos. 
I have been unable to build Boost with some toolset/platform combinations. The
users I support don't need the Boost features in Trilinos, so I have been
manually hacking trilinos/package.py to disable boost. I would like to propose
that these changes be added to the released version.

+ Add boost as a variant, default to true so there is no change to existing
  behavior.
+ Move the CMake configure options related to Boost into a conditional block
  that is triggered by "if '+boost' in spec".
 2016-06-12 19:48:45 -06:00
Tom Scogland
1b28991e0a Merge pull request #1026 from epfl-scitas/packages/lmod 
lmod : updated package and dependencies
 2016-06-12 17:01:41 -07:00
Glenn Johnson
59c9816dbf Make quotations in variables consistent. 2016-06-11 16:01:23 -05:00
Glenn Johnson
0e9f8bd38d Add list_url for old versions. 2016-06-11 15:53:28 -05:00
Erik Schnetter
953b65abcc Do not pass "/usr" or "/usr/local" as path to configure 2016-06-11 16:41:39 -04:00
Glenn Johnson
6c0ea77d1d Add list_url for older versions. 2016-06-11 15:36:43 -05:00
Adam J. Stewart
85502e34f9 CMake knows how to create PIC 2016-06-10 14:35:19 -05:00
Kelly (KT) Thompson
883f601bca Fix style issues. 2016-06-09 19:18:25 -06:00
Kelly (KT) Thompson
915115386a Package serf also depends on zlib. 
+ Add zlib as a required dependency.
+ Point scons build system to the spack provided zlib installation.
 2016-06-09 18:30:28 -06:00
Orion Poplawski
454acf58af Add additional blank line for flake8 2016-06-08 16:49:42 -06:00
Orion Poplawski
e3ca5e6676 Add patch to compile pcre with Intel 16.0.3 compiler 2016-06-08 16:23:04 -06:00
Adam J. Stewart
65896ff2ed Add Armadillo and SuperLU packages 2016-06-08 14:11:14 -05:00
James Riley Wynne III
4b9707f8ea Fixed flake8 formatting problems 2016-06-08 14:36:45 -04:00
James Riley Wynne III
42a10d5690 Fixes issue #438 2016-06-08 12:43:05 -04:00
Nicolas Richart
2d21693b9d Missing file to patch mumps 2016-06-08 17:09:13 +02:00
alalazo
564483936f qa : fixed flake8 issues 2016-06-08 16:33:49 +02:00
alalazo
4a61efe641 lmod : fixed issues with LUA_PATH during installation 2016-06-08 16:21:09 +02:00
alalazo
f4a39457de lmod : updated package and dependencies 2016-06-08 15:35:15 +02:00
Nicolas Richart
165411f4a5 bug fix in the +mpi case 2016-06-08 15:17:12 +02:00
Nicolas Richart
498c098d11 Cleaning flake warnings in mumps package 2016-06-08 14:57:54 +02:00
Nicolas Richart
e124c86a4f Corrected the shared libraries and tests in mumps package 2016-06-08 14:17:46 +02:00
Glenn Johnson
bb19dffb26 Fix flake8 error. 2016-06-07 23:40:12 -05:00
Glenn Johnson
ad0cfa41aa Fix flake8 errors 2016-06-07 23:37:49 -05:00
Glenn Johnson
738720a000 new package: r-devtools 
This PR brings in the R devtools package and it dependencies.
 2016-06-07 23:20:46 -05:00
Greg Lee
bb57b82794 flake8 fixes 2016-06-07 20:15:02 -07:00
Glenn Johnson
2262bc95f1 new package: r-packrat 
Manage the R packages your project depends on in an isolated, portable,
and reproducible way.
https://github.com/rstudio/packrat/
 2016-06-07 22:04:11 -05:00
Greg Lee
25b2f7b1d7 put older versions back + version-specific dwarfdump dir 2016-06-07 20:02:38 -07:00
Mayeul d'Avezac
0b5ce9e16a 💄 style points requested by flake8 2016-06-03 11:52:19 +01:00
Nicolas Richart
8b6035ab82 Making emacs dependent on internal packages 2016-06-03 00:24:00 +02:00
Todd Gamblin
3d2b25e45c Merge pull request #1014 from epfl-scitas/packages/mvapich2 
Changes to take into account slurm in version @2.1: of mvapich2
 2016-06-02 01:08:28 -07:00
Todd Gamblin
27bc49d8c8 Merge pull request #1001 from ashkan2200/develop 
Dealii, fixed issue with tests
 2016-06-02 01:01:29 -07:00
Todd Gamblin
b843b73bb5 Merge pull request #1005 from eschnett/eschnett/hdf5-update 
Update HDF5 to version 1.10.0-patch1
 2016-06-02 00:57:15 -07:00
Todd Gamblin
1fb4fa02e3 Merge pull request #1010 from epfl-scitas/packages/tetgen 
Adding a version to tetgen
 2016-06-02 00:54:09 -07:00
Nicolas Richart
53dcc39b72 removing useless selfs 2016-06-01 17:33:54 +02:00
Nicolas Richart
3ab8468e73 Correcting the flake8 warnings 2016-06-01 16:43:08 +02:00
Nicolas Richart
0451c8e55f Addapting the mvapich2@2.1: configure options for slurm 2016-06-01 15:58:00 +02:00
Nicolas Richart
d802144f39 Introduced a bug by correcting flake8 warnings 2016-06-01 03:31:29 +02:00
Nicolas Richart
5d4a0e4050 Corrections for flake8 2016-06-01 03:28:42 +02:00
Nicolas Richart
97bad2c1ac Corrections for flake8 2016-06-01 03:25:37 +02:00
Nicolas Richart
58052e6632 Adding package fenics 2016-06-01 03:20:56 +02:00
Nicolas Richart
cb673765c2 Adding a version to tetgen 2016-06-01 03:02:48 +02:00
Nicolas Richart
0df0677d5b Adding a variant to link against the spack libraries instead of the system ones 2016-06-01 03:00:03 +02:00
Nicolas Richart
9db8dc1895 Removing extra dependencies + minor fix according to remarks on #1002 2016-06-01 00:57:01 +02:00
Erik Schnetter
c03c689cb2 Update HDF5 to version 1.10.0-patch1 2016-05-31 12:18:17 -04:00
Adam J. Stewart
564e7f5e5b Don't build in parallel 2016-05-31 09:32:24 -05:00
Mayeul d'Avezac
29b85fbce0 Eigen can be installed with dependencies 2016-05-31 10:10:12 +01:00
Ali Dorostkar
6f96484f83 Spacing correction 
More spacing correction
 2016-05-31 09:58:29 +02:00
Ali Dorostkar
e82fb5b58f Fixed spacing 
Replaced tabs with spaces
 2016-05-31 08:44:46 +02:00
Todd Gamblin
f3f0122f11 Merge branch 'develop' into features/newarch 2016-05-30 13:54:53 -07:00
Ali Dorostkar
c4d5bd13c7 dealii, Added comment 
Added comment for why step-40 is done differently for dealii 8.4.0 and
later
 2016-05-30 18:11:34 +02:00
Nicolas Richart
fd345c8ef0 Merge branch 'packages/foam-extend' of github.com:epfl-scitas/spack into packages/foam-extend 2016-05-30 17:04:21 +02:00
Nicolas Richart
9f4e599232 Ignoring the flake8 error for a line too long 2016-05-30 16:58:06 +02:00
Nicolas Richart
08c8d1d1f7 limiting package to foam-extend to start 2016-05-30 16:49:25 +02:00
Nicolas Richart
4122ecbc80 First try at OpenFOAM-extend 2016-05-30 16:49:25 +02:00
Ali Dorostkar
4f591a6fe3 Step-40 test for 8.3.0 and earlier 
Integrated part of step-40 to be tested for earlier versions of dealii
 2016-05-30 16:42:24 +02:00
Nicolas Richart
fe79e43459 limiting package to foam-extend to start 2016-05-30 15:46:39 +02:00
Ali Dorostkar
d7e84fe07c dealii, test for specific version 
Specified that test case “step-40” is only to be run when using dealii
version 8.4.0 or later
 2016-05-30 14:03:27 +02:00
Glenn Johnson
66aaaa1751 Add a comment regarding the reason for the patch. 2016-05-29 15:30:09 -05:00
Ali Dorostkar
c2ac47235f additional versions for Dealii 
Included additional versions for Deal.II package.
 2016-05-29 13:22:19 +02:00
Glenn Johnson
c16d7c481c Get glib to compile with gcc-6.1 
This commit adds a patch to fix the case where gcc-6.1 emits an error
for string format literal that was a warning in previous versions of
gcc. The patch reference is
https://bugzilla.gnome.org/show_bug.cgi?id=761550

Also ran the package file through autopep8.
 2016-05-28 23:30:56 -05:00
Mario Melara
33e1dcc476 Adding mock package file for external module 2016-05-28 10:14:40 -07:00
Gregory Becker
9dad7c2ace re-merged mainline develop 2016-05-27 13:13:19 -07:00
Greg Lee
6dcdb50a3e Merge branch 'develop' of https://github.com/llnl/spack into develop 2016-05-27 12:44:57 -07:00
Greg Lee
0ae1298d25 updated libdwarf version and dwarfdump build 2016-05-27 12:43:13 -07:00
Adam J. Stewart
dd5a6914f1 Undo changes to flex 2016-05-27 12:56:43 -05:00
Todd Gamblin
f6a0cd1bf8 Merge pull request #973 from eschnett/eschnett/openmpi-verbs 
Auto-detect verbs location
 2016-05-27 11:01:44 -05:00
Todd Gamblin
7b063e3e6c Merge pull request #975 from adamjstewart/features/stream 
Add STREAM benchmark package
 2016-05-27 10:59:13 -05:00
Todd Gamblin
dc4ca26441 Merge pull request #992 from davydden/update/dealii 
Update/dealii
 2016-05-26 17:39:37 -05:00
Todd Gamblin
96f65479e7 Merge pull request #993 from xjrc/packages/metis 
Update Package : METIS/ParMETIS
 2016-05-26 17:37:33 -05:00
Denis Davydov
040c122719 dealii: formatting 2016-05-26 23:00:22 +02:00
Denis Davydov
0036483ded dealii: don't hardcode blas and mpi; minor fixes to dependencies 2016-05-26 18:07:27 +02:00
Todd Gamblin
76d42b5200 Merge pull request #982 from trws/rust 
Rust
 2016-05-25 15:15:51 -05:00
Joseph Ciurej
734fb459a4 Fixing a small bug with metis@4+shared installs on the Mac platform. 2016-05-25 12:27:52 -07:00
Joseph Ciurej
483ec0d762 Added preliminary improved testing code for METIS@:4. 2016-05-24 16:13:52 -07:00
Joseph Ciurej
c9ba73d931 Added staging support and improved error handling for METIS@:4 installs. 2016-05-24 16:05:29 -07:00
Joseph Ciurej
b5d0a38860 Fixed a few linking/testing bugs in the METIS@:4 install method. 2016-05-24 15:03:21 -07:00
Greg Lee
1bca69f272 updated launchmon url and version 2016-05-24 14:54:09 -07:00
Joseph Ciurej
064d3584c0 Updating 'metis' and 'parmetis' to conform to PEP8 standards. 2016-05-24 12:28:05 -07:00
Joseph Ciurej
0ef6843d85 Improved MPI path specification for ParMETIS using PR #893 features. 2016-05-24 12:28:05 -07:00
Joseph Ciurej
9c95ec0b29 Updated and added new versions to the METIS/ParMETIS packages. 
- Added a 'url_for_version' function to the METIS/ParMETIS packages.
- Added installation support for METIS@5.0.2 and ParMETIS@4.0.2.
- Changed the 'double' variant to 'real64' to make it more consistent
  with the 'idx64' variant naming.
- Removed an unnecessary dependency on gdb.
 2016-05-24 12:28:05 -07:00
Denis Davydov
c78349a3a4 octave: fix formatting 2016-05-23 15:08:10 +02:00
Denis Davydov
ce3146e91a octave: add missing dependencies and update to 4.0.2 2016-05-23 14:50:06 +02:00
Tom Scogland
00de72272d rust compiler/builder package, new llvm variants 2016-05-22 11:16:00 -07:00
Tom Scogland
425beb4d97 updates for rust-bindgen 2016-05-22 11:16:00 -07:00
Tom Scogland
404b7c7c4f initial rust support 2016-05-22 11:16:00 -07:00
Nicolas Richart
4c87ef915f First try at OpenFOAM-extend 2016-05-22 18:55:29 +02:00
Erik Schnetter
09eed08b9c Auto-detect verbs location 2016-05-20 16:24:48 -04:00
Todd Gamblin
d94972503a Merge pull request #964 from davydden/update/tbb 
tbb: add 4.4.4; raise InstallError when building 4.4.3 with GCC6.1
 2016-05-19 22:44:03 -07:00
Nicolas Richart
2e77cc635e missing @ in version definition 2016-05-20 00:51:58 +02:00
Nicolas Richart
a233ed2de7 changes scotch package to make he coverage test pass 2016-05-20 00:42:34 +02:00
Nicolas Richart
a51566ec6e changes to simplify the esmumps variant for version < 6.0.0 + typos corrections, according to the remarks on PR #979 2016-05-20 00:31:12 +02:00
Nicolas Richart
1bf306bbbd Adding +metis variant to scotch + minor changes 2016-05-19 17:26:44 +02:00
Gregory Becker
9f59c128be Partial merge of mainline develop 2016-05-18 15:13:40 -07:00
Tom Scogland
29635b7bbd initial docs for find and flake8 cleanup 2016-05-18 14:04:39 -07:00
Adam J. Stewart
434ff28af4 Add STREAM benchmark package 2016-05-18 15:14:21 -05:00
Todd Gamblin
d391670755 Merge pull request #966 from verolero86/develop 
Add option to disable VT support in openmpi package
 2016-05-18 08:36:23 -07:00
Todd Gamblin
78c46aab35 Merge pull request #969 from Rombur/boost 
Add boost 1.61.0
 2016-05-18 08:35:51 -07:00
Todd Gamblin
637da63506 Merge pull request #948 from davydden/bugfix/astyle 
astyle: fix filter command which failed on OSX with python 2.7.10
 2016-05-18 08:35:01 -07:00
Bruno Turcksin
bbbffe7423 Add boost 1.61.0 2016-05-18 08:51:22 -04:00
Denis Davydov
267666cd97 formatting 2016-05-18 08:35:47 +02:00
Greg Lee
582d01784a added newdtags variant, default to false (i.e., remove --enable-new-dtags) 2016-05-17 21:18:34 -07:00
Todd Gamblin
d592a1655f Merge pull request #961 from xjrc/features/flake8-improvements 
Enhancement Proposal: Exempt '@when' Functions from Style Redefinition Errors
 2016-05-17 17:00:49 -07:00
Todd Gamblin
502420ceff Merge branch 'features/cflags' into develop 
Conflicts:
	lib/spack/spack/cmd/find.py
	var/spack/repos/builtin/packages/ghostscript/package.py
 2016-05-17 16:44:54 -07:00
Denis Davydov
1a187e73ae tbb: add 4.4.4; raise InstallError when building 4.4.3 with GCC6.1 2016-05-17 22:57:32 +02:00
Todd Gamblin
138307dd0c Merge pull request #955 from trws/lua-rework 
complete lua rework
 2016-05-17 13:21:51 -07:00
Veronica G. Vergara Larrea
6c95a5d496 the right flag here is +, the default behavior is controlled in the variant 2016-05-17 14:37:36 -04:00
Adam J. Stewart
f16228d811 Add more install directories 2016-05-17 13:36:38 -05:00
becker33
3d9c8f4fd4 Merge pull request #952 from davydden/package/sed 
sed: add package
 2016-05-17 11:27:57 -07:00
Adam J. Stewart
631cbdbda8 Flake8 2016-05-17 13:22:00 -05:00
Adam J. Stewart
7b9b18f03c Add HPL benchmark package 2016-05-17 13:14:59 -05:00
Veronica G. Vergara Larrea
471950434e add a flag to openmpi to allow users to disable vt support 2016-05-17 13:40:01 -04:00
Todd Gamblin
1774c7a7b3 Merge pull request #958 from trws/golang-new 
Golang new
 2016-05-17 05:56:06 -07:00
Tom Scogland
80c02ad36a flake8-related cleanup 2016-05-17 05:30:35 -07:00
Tom Scogland
af4af94203 rework for gopath and bootstrapping 2016-05-17 05:21:11 -07:00
Joseph Ciurej
761c5c8450 Added line limit exemptions for 'variant' and 'version' directives. 
Updated the 'scotch' package to use oneline 'variant' directives.
 2016-05-16 12:14:57 -07:00
Joseph Ciurej
52c8bedb9c Updated style checking to ignore refinition errors for '@when' fxns. 
Updated the Scotch package to conform to PEP8 standards and to test style checking improvements.
 2016-05-16 11:09:44 -07:00
Todd Gamblin
a74bc9369b Merge pull request #953 from citibeth/150514-NetCDFCXX4 
netcdf-cxx4: Update to latest released version 4.3.0
 2016-05-16 10:58:27 -07:00
Elizabeth Fischer
65ff89a0b0 Placate flake8 demands. 2016-05-16 12:53:24 -04:00
Tom Scogland
62dd040a8f add GOPATH support 
Also fixes flex to depend on bison for its yacc implementation.
 2016-05-16 09:30:37 -07:00
Tom Scogland
9780427940 fixing more flake8 errors that only appear on travis... 2016-05-16 05:37:04 -07:00
Tom Scogland
dacedfcc0e formatting to appease flake8 2016-05-16 05:12:30 -07:00
Tom Scogland
52c359bc77 fix linking issue on ubuntu 
Evidently some readline variants are built with only a dynamic dependency on
ncurses, this addresses that problem for such systems.
 2016-05-16 03:36:31 -07:00
Todd Gamblin
53df9fbb4f Merge pull request #959 from davydden/bugfix/doxygen_ghostscript_graphviz 
Bugfix/doxygen ghostscript graphviz
 2016-05-16 00:12:59 -07:00
Denis Davydov
0fbf70d95d indentation fixes 2016-05-15 23:37:09 +02:00
Denis Davydov
459c647bc9 doxygen: add graphviz variant; enable flex and bison on OSX and they build fine 2016-05-15 19:43:01 +02:00
Tom Scogland
71d9911539 go cleanup, adding hub 2016-05-15 10:23:33 -07:00
Tom Scogland
b7aa47a178 remove debug print 2016-05-15 09:52:09 -07:00
Denis Davydov
a045154b5e graphviz: add missing dependency and fix installation on darwin 2016-05-15 18:34:50 +02:00
Denis Davydov
21d4f3a356 ghostscript: url was changed upstream 2016-05-15 18:33:06 +02:00
Greg Lee
c2ca5f44b4 flake8 fixes 2016-05-15 08:19:55 -07:00
Tom Scogland
2bfa4d7e4f removing comments 
also randomly changed unnecessary licence block
 2016-05-14 22:42:14 -07:00
Tom Scogland
577657b3f7 go rework 
This commit includes:
* a new go package that uses gccgo to bootstrap the go toolchain
* env support added to Executable
* a new Go fetch strategy that uses `go get` to fetch a package and all
  of its deps
* A platinum searcher package that leverages the new go package and
  fetch strategy
 2016-05-14 22:35:55 -07:00
Tom Scogland
0816e9554d adding go_compiler providers 2016-05-14 18:06:42 -07:00
Tom Scogland
915f91a619 moving go packages to the new path 2016-05-14 18:06:42 -07:00
Tom Scogland
0c33e8ac48 go and a basic go package 2016-05-14 18:06:41 -07:00
Tom Scogland
f50439b990 appeasing the great vengeful flake8 gods 2016-05-14 17:49:06 -07:00
Tom Scogland
0668b6d7ba changes to appease flake8 for lua-luaposix package 2016-05-14 17:38:32 -07:00
Tom Scogland
21161a60ff changes to appease flake8 (mostly) for lua package 2016-05-14 17:38:13 -07:00
Glenn Johnson
fffc2d2765 Updated turbomole package file. 
This PR updates the turbomole package file but does not introduce any
new funtionality. The updtes are:
- use spack interface for subprocess.PIPE and subprocess.Popen
- clean up based on flake8
- remove some extra whitespace
 2016-05-14 19:33:45 -05:00
Tom Scogland
b5979b13e3 complete lua rework, also module path fix 
This is a complete rework of the lua package, it also allows the
environment modification classes to handle paths that are not separated
by colons, and uses the support for same in TCL modules as well.

The biggest difference is the handling for lua extension packages, which
now have their paths set correctly by the lua parent package, and have
access to both lua and luarocks as installation tools. See the luaposix
package for what should be required for most lua packages after this.
 2016-05-14 16:18:26 -07:00
Denis Davydov
c5a35acd67 sed: add package 2016-05-14 22:29:16 +02:00
Elizabeth Fischer
4bf9b168a5 netcdf-cxx4: Update to latest released version 4.3.0 2016-05-14 16:19:10 -04:00
Gregory L. Lee
e3cd0a67d0 address flake8 issues 2016-05-13 16:12:48 -07:00
Gregory L. Lee
e9b71872a8 addressed PR#946 comments from @adamjstewart 2016-05-13 15:16:07 -07:00
Todd Gamblin
4a6ec6377d Merge pull request #940 from gzagaris/feature/doxygen-version-1.8.11 
Add doxygen version 1.8.11
 2016-05-13 10:10:23 -07:00
Denis Davydov
8db35ab9a2 openblas: use spack_cc/spack_f77 and add a note on compiler mixing 2016-05-13 17:28:30 +02:00
Denis Davydov
67999d1b1c astyle: fix filter command which failed on OSX with python 2.7.10 2016-05-13 17:13:45 +02:00
George Zagaris
e763eeacdd fix format in doxygen/package.py 2016-05-12 23:25:10 -07:00
Gregory L. Lee
b8a91db089 Intel software packages and license enhancements 2016-05-12 20:04:45 -07:00
Adam J. Stewart
088dce709e Make flake8 happy 2016-05-12 16:33:37 -05:00
Adam J. Stewart
ab41fd6692 Add bertini package 
Also add missing dependency. Flex would not build for me without bison.
It complained about not being able to find `yacc`.
 2016-05-12 16:21:06 -05:00
Adam J. Stewart
03307f91df Fix bug when compiling elk~mpi 2016-05-12 10:27:05 -05:00
Adam J. Stewart
3526d92660 Indentation fix 2016-05-12 10:27:05 -05:00
Adam J. Stewart
d7020434d9 Use new-ish blas_shared_lib and more flake8 fixes 2016-05-12 10:27:04 -05:00
Adam J. Stewart
e2e72b14b2 Use new openmp_flag and mpi attributes 2016-05-12 10:26:10 -05:00
George Zagaris
3ece0e7b76 Add doxygen version 1.8.11 2016-05-12 00:42:22 -07:00
Todd Gamblin
e7ced54369 Correct LLNL LGPL license template for clarity. 2016-05-11 21:22:25 -07:00
Todd Gamblin
14fe0b8ad2 Merge pull request #558 from adamjstewart/features/pgi 
Add Licensed Software Support
 2016-05-11 17:17:47 -07:00
Todd Gamblin
2dc49ee88d Merge pull request #938 from KineticTheory/pkg-moab 
Provide new package: MOAB
 2016-05-11 17:14:05 -07:00
Kelly (KT) Thompson
c5a19b57f7 Clean up formatting. 2016-05-11 16:33:57 -06:00
Gregory Becker
2e1810e3a7 re-merging develop 2016-05-11 15:26:09 -07:00
Kelly (KT) Thompson
8bec127a1d Attempt to fix formatting issues (flake8). 2016-05-11 14:00:44 -06:00
Kelly (KT) Thompson
9482ce1fce Remove some extraneous comments. 2016-05-11 12:39:20 -06:00
Kelly (KT) Thompson
e200a41d3d New package MOAB. 2016-05-11 12:34:33 -06:00
Adam J. Stewart
c043275f1b Final flake8 changes 2016-05-11 11:46:41 -05:00
Adam J. Stewart
5879f8207f Flake8 formatting changes 2016-05-11 11:32:08 -05:00
Adam J. Stewart
8ea5e946a2 Add Allinea packages 2016-05-11 11:32:08 -05:00
Adam J. Stewart
8bcb812529 Allow multiple license symlinks 2016-05-11 11:32:08 -05:00
Adam J. Stewart
6906911e85 Allow license files to use different symbols for comments 2016-05-11 11:32:08 -05:00
Adam J. Stewart
240c0643f2 Add NAG Fortran compiler package 2016-05-11 11:27:11 -05:00
Adam J. Stewart
82ce798f41 Bug fix 2016-05-11 11:27:11 -05:00
Adam J. Stewart
2fb128fb34 Add PGI Compiler Package 2016-05-11 11:27:11 -05:00
Denis Davydov
eba264fcd0 fix formatting 2016-05-11 16:11:34 +02:00
Denis Davydov
361b629034 openblas: make unit test more robust by outputing only the solution vector from dgesv 2016-05-11 15:10:13 +02:00
Denis Davydov
809ded74c9 add functions for simple unit tests; refactor openblas to use them 2016-05-11 15:10:13 +02:00
Todd Gamblin
9030541e4b Merge pull request #929 from epfl-scitas/differentiate_framework_from_packages 
QA : make qa checking less painful
 2016-05-11 02:26:07 -07:00
Todd Gamblin
d7847ff768 Use just one flake8 file; mark package.py files to avoid E501 w/url. 2016-05-11 01:16:41 -07:00
alalazo
7d74e209f3 qa : this should still fail due to F821 2016-05-10 19:20:26 +02:00
Todd Gamblin
3e717842c9 Merge pull request #924 from hegner/feature/python-diverse 
Add a few more python packages
 2016-05-10 09:44:32 -07:00
Todd Gamblin
836d081bca Merge pull request #927 from davydden/astyle_fix_ubuntu 
astyle: compile with spack_cxx
 2016-05-10 09:43:44 -07:00
alalazo
979b53cab6 qa : modifying 2 packages and a framework file just for the sake of it 2016-05-10 18:33:07 +02:00
Tom Scogland
8fec824484 Merge pull request #769 from epfl-scitas/openmpi_variants 
openmpi : added variants
 2016-05-10 09:02:33 -07:00
Denis Davydov
c8d8860742 astyle: fix formatting 2016-05-10 18:01:19 +02:00
Benedikt Hegner
fa44cd5cef renaming py-Genshi into py-genshi 2016-05-10 17:30:44 +02:00
Benedikt Hegner
f5fb771573 fixing imports; configure commands aren't available at import time yet 2016-05-10 14:52:14 +02:00
Denis Davydov
cd9cdd6410 astyle: compile with spack_cxx 2016-05-10 13:37:57 +02:00
Benedikt Hegner
ad42579f08 addressing coding style rules 2016-05-10 13:17:36 +02:00
Benedikt Hegner
aca5941a0e Add a few more python packages 
py-Genshi
py-astroid
py-jinja2
py-logilab-common
py-markupsafe
py-mistune
py-prettytable
py-py2neo
py-storm
 2016-05-10 11:48:18 +02:00
Todd Gamblin
35cf52d182 Merge pull request #707 from dhandeo/visit 
VisIt v2.10.1
 2016-05-10 01:40:27 -07:00
Todd Gamblin
a1ebdf63f3 Merge pull request #812 from eschnett/eschnett/hdf5-check-install 
Check the installed HDF5 library for consistency
 2016-05-10 01:34:10 -07:00
Todd Gamblin
6c46a5d623 Merge pull request #807 from gartung/fftw-openmp 
FFTW: openmp needs to be an option for clang build
 2016-05-10 01:33:13 -07:00
Todd Gamblin
2a38ec4c93 Merge pull request #788 from citibeth/efischer/140416-UpdatePNetCDF 
parallel-netcdf: Updated package
 2016-05-10 01:31:57 -07:00
Todd Gamblin
57e495943f Merge pull request #757 from glennpj/extend_r 
Make R extendable
 2016-05-10 01:30:13 -07:00
Todd Gamblin
b1da3664ec Merge pull request #795 from adamjstewart/features/argcomplete 
Add argcomplete python package
 2016-05-10 01:29:08 -07:00
Todd Gamblin
87c772b117 Merge pull request #845 from davydden/openblas_cleanup_unit_test 
openblas: fix a bug and cleanup the unit test
 2016-05-10 01:28:49 -07:00
Todd Gamblin
ccccd7b60d Merge pull request #806 from davydden/openblas_openmp_clang 
openblas: do not use OpenMP with Clang
 2016-05-10 01:28:12 -07:00
Todd Gamblin
f21fcb3b88 Merge pull request #798 from jgalarowicz/osscbtf-changes 
Update the main Krell Institute and Argo Navis Tech. packages for MPI…
 2016-05-10 01:26:48 -07:00
Todd Gamblin
d2004a186c Merge pull request #825 from xjrc/packages/scotch 
Update Package : Scotch
 2016-05-10 01:26:21 -07:00
Todd Gamblin
0f427ed334 Tweak nccmp to be more spack-compatible. 
- Spack doesn't set F90, but it confuses the nccmp build.  Just remove
  it from the environment.

- TODO: should build environment unset this variable?
 2016-05-10 01:07:34 -07:00
Todd Gamblin
1cc94a0f79 Merge branch 'efischer/160425-nccmp' of git://github.com/citibeth/spack into citibeth-efischer/160425-nccmp 2016-05-10 01:04:46 -07:00
Todd Gamblin
1568e64f95 Merge pull request #862 from davydden/glib_libxcb_missing_dependencies 
Glib libxcb missing dependencies
 2016-05-10 00:57:27 -07:00
Todd Gamblin
5e471719a6 Merge pull request #907 from eschnett/eschnett/binutils-werror 
Disable -Werror
 2016-05-10 00:54:24 -07:00
Todd Gamblin
2fde72075f Merge pull request #918 from hegner/bugfix/bison 
Add missing m4 dependency to bison
 2016-05-10 00:54:04 -07:00
Todd Gamblin
e672e10219 Merge pull request #912 from citibeth/efischer/160506-NCO 
nco: Added new package
 2016-05-10 00:53:51 -07:00
Todd Gamblin
a996b8aa7f Merge pull request #919 from jppelteret/bugfix/gmsh-2 
GMsh: Fix binary linking against its own libraries
 2016-05-10 00:53:22 -07:00
Todd Gamblin
813fefbc71 Merge pull request #922 from bcouturi/gdbupdate 
Added gdb 7.11 released on 24 Feb 2016
 2016-05-10 00:53:00 -07:00
Todd Gamblin
e3115aa505 Kripke variants. 2016-05-10 00:31:06 -07:00
alalazo
474048ae8b openmpi : fixes #920, added sqlite as a dependency 
The default for the variant `pmi` has been set to `False`
 `sqlite` is now a dependency if `+sqlite3`
 2016-05-10 09:02:16 +02:00
alalazo
405b04efab Merge branch 'develop' of https://github.com/LLNL/spack into openmpi_variants 2016-05-10 08:40:26 +02:00
Denis Davydov
b063ab42bf openblas: fix and cleanup the unit test 2016-05-10 07:33:57 +02:00
Todd Gamblin
2e0ee5404d clean up Kripke package and dependencies. 2016-05-09 17:14:25 -07:00
Todd Gamblin
92b7534885 Merge branch 'features/kripke' of git://github.com/tzislam/spack into tzislam-features/kripke 2016-05-09 17:00:47 -07:00
Tanzima Z. Islam
23ec6c6bb0 Removed FIXME comments 2016-05-09 16:34:27 -07:00
Tanzima Z. Islam
045e5bd458 Adding a new package: Kripke from the public tar ball 2016-05-09 16:22:07 -07:00
Joseph Ciurej
ceab445b9f Integrated improvements from PR #893 to remove hardcoded MPI path. 2016-05-09 14:39:42 -07:00
Joseph Ciurej
88d2f6b83a Enabled the '+esmumps' variant for 'scotch@:6.0.0'. 
Added support for 'scotch@6.0.0'.
 2016-05-09 14:19:42 -07:00
Joseph Ciurej
7e6be184bc Updated and fixed the Scotch package. 
- Fixed a bug that was causing shared library usage to fail when linking with another application.
- Updated the repository URL to allow for more general version downloading.
- Added installation support for version 5.1.10b.
- Cleaned up the installation file to make it a bit easier to follow and modify.
 2016-05-09 14:19:42 -07:00
Ben Couturier
3948b082ad Added gdb 7.11 2016-05-09 22:32:46 +02:00
Jean-Paul Pelteret
970196d825 GMsh: Fix binary linking against its own libraries 
GMsh binary now links against full path name of libraries. This fixes
problems, such as `dyld: Library not loaded: libGmsh.2.11.dylib`, when
running the executable.
 2016-05-09 14:23:07 +02:00
Benedikt Hegner
6e07f46df8 add missing m4 dependency to bison 2016-05-09 14:02:41 +02:00
alalazo
3d7684277a Merge branch 'openmpi_variants' of github.com:epfl-scitas/spack into openmpi_variants 
Conflicts:
	var/spack/repos/builtin/packages/openmpi/package.py
 2016-05-09 10:56:26 +02:00
alalazo
497ed9f933 Merge branch 'develop' of https://github.com/LLNL/spack into openmpi_variants 
Conflicts:
	var/spack/repos/builtin/packages/openmpi/package.py
 2016-05-09 08:23:30 +02:00
Todd Gamblin
ea408cc0d0 Merge pull request #911 from castillo23/packages/crypto 
add support for crypto version 5.6.1
 2016-05-08 14:40:21 -07:00
Todd Gamblin
7145b72482 Merge pull request #914 from trws/packages-leading-to-neovim 
pile of dependencies for neovim, including luajit and libuv
 2016-05-08 14:37:51 -07:00
Todd Gamblin
bd63545b0c Merge pull request #913 from trws/mpi-should-have-pmi 
add pmi support and process managers to the MPIs
 2016-05-08 14:36:38 -07:00
Jean-Paul Pelteret
95c7f4fba3 Fixes #915 2016-05-08 16:53:31 +02:00
Denis Davydov
72b91758c9 openblas: raise an error when using +openmp with clang; set +openmp to false by default 2016-05-08 16:51:06 +02:00
Massimiliano Culpo
7d5bb088b4 Merge branch 'develop' of https://github.com/LLNL/spack into openmpi_variants 
Conflicts:
	var/spack/repos/builtin/packages/openmpi/package.py
 2016-05-07 15:08:27 +02:00
Tom Scogland
22afc6dadd pile of dependencies for neovim, including luajit and libuv 2016-05-06 15:33:26 -07:00
Tom Scogland
7ec28231d9 Merge pull request #906 from adamjstewart/features/xerces-c 
Remove FIXME comments
 2016-05-06 15:30:09 -07:00
Tom Scogland
1de110fbba Merge pull request #794 from adamjstewart/features/jpeg 
Add latest jpeg version
 2016-05-06 15:20:43 -07:00
Tom Scogland
7dbf6f97f6 Merge pull request #841 from eschnett/eschnett/hwloc 
Update hwloc to 1.11.3
 2016-05-06 15:19:16 -07:00
Tom Scogland
1cf2526a79 Merge pull request #865 from davydden/silver_searcher_dependencies 
the_silver_searcher: add missing dependency
 2016-05-06 15:18:50 -07:00
Tom Scogland
86449790fe add pmi support and process managers to the MPIs 2016-05-06 15:15:40 -07:00
Elizabeth Fischer
c82db2116b nco: Added new package 2016-05-06 17:42:42 -04:00
Cecilia W. Castillo
7bf724b1d3 add support for crypto version 5.6.1 2016-05-06 14:14:13 -07:00
Tanzima Z. Islam
9f212e7201 Adding a new package file for Kripke 2016-05-06 13:50:34 -07:00
Erik Schnetter
db80c5e97e Disable -Werror 
This leads to problems if new compiler versions report new kinds of warnings.
 2016-05-05 21:11:54 -04:00
Gregory Becker
11b62114bb versioning the database 2016-05-05 16:58:00 -07:00
Gregory Becker
44f089508b Changed other packages to fit new syntax 2016-05-05 15:40:22 -07:00
Gregory Becker
d45b2c7947 Fixed openssl to work with new syntax 2016-05-05 15:36:48 -07:00
Adam J. Stewart
1203a14563 Remove tutorial comments 2016-05-05 14:01:21 -05:00
Todd Gamblin
9fb1a9537d Merge branch 'develop' into features/cflags 2016-05-05 10:49:15 -07:00
Robert D. French
18d2b28c49 Build and install BBCP 
Build and install BBCP

Use correct destination for install
 2016-05-05 10:58:24 -04:00
Todd Gamblin
10b0cb108c Merge pull request #893 from davydden/mpi_dependent_env 
Introduce variables for MPI compiler wrappers and document their usage
 2016-05-05 01:40:11 -07:00
Denis Davydov
c3bc4d6195 mpich: remove module.mpicc as no formula is using it and it is a duplicate of self.spec.mpicc 2016-05-05 10:28:04 +02:00
Denis Davydov
b12fb7ebc8 mpi: move mpicc/mpicxx/mpifc/mpif77 to setup_dependent_package() 2016-05-05 10:24:32 +02:00
Todd Gamblin
56557f7ff6 Merge pull request #871 from davydden/dealii_updated_dependencies 
dealii: add new dependency -- gsl
 2016-05-05 01:00:55 -07:00
Todd Gamblin
4ee1bca1d9 Merge pull request #881 from KineticTheory/pkg-superlu-dist 
+ Add version 5.0 download for SuperLU_DIST.
 2016-05-05 00:57:24 -07:00
Todd Gamblin
c6a7af3fa7 Merge pull request #885 from davydden/p4est_test_option 
p4est: put back +tests variant
 2016-05-05 00:53:58 -07:00
Todd Gamblin
d00680a883 Merge pull request #886 from eschnett/eschnett/openblas-make 
Disable OpenBLAS's overriding of our "make -jN" option
 2016-05-05 00:53:47 -07:00
Todd Gamblin
c7f23ca0d6 Merge pull request #887 from adamjstewart/features/openmpi 
Re-add hwloc as a dependency of openmpi
 2016-05-05 00:53:10 -07:00
Todd Gamblin
d0acc9827a Merge pull request #884 from davydden/libtool_missing_dependency 
libtool: add a missing dependency
 2016-05-05 00:52:39 -07:00
Todd Gamblin
c1010c3422 Merge pull request #889 from adamjstewart/features/netcdf 
Remove hdf5 ~cxx constraint on netcdf
 2016-05-05 00:51:49 -07:00
Todd Gamblin
1181ad2bf0 Merge pull request #891 from adamjstewart/features/gcc 
Add latest version of GCC
 2016-05-05 00:51:05 -07:00
Todd Gamblin
053e687e79 Merge pull request #800 from eschnett/eschnett/qthreads 
Add some qthreads patches
 2016-05-05 00:49:32 -07:00
Todd Gamblin
7ac8ddde96 Merge pull request #897 from robertdfrench/https-urls-for-subversion 
Build Subversion with HTTP/S support
 2016-05-05 00:20:59 -07:00
Todd Gamblin
3dd5b2845b Merge pull request #900 from eschnett/eschnett/flex 
Update Flex to 2.6.0
 2016-05-05 00:11:50 -07:00
Todd Gamblin
55f1cafb70 Merge pull request #899 from LLNL/bugfix/github-808-mrnet 
added git commit for clang support
 2016-05-05 00:11:19 -07:00
Dhanannjay 'Djay' Deo
ef202fbe0c Build static and shared libraries for silo 2016-05-04 22:50:15 -04:00
Dhanannjay 'Djay' Deo
45e77e7739 Correctly extend std_cmake_args 2016-05-04 22:49:47 -04:00
Dhanannjay 'Djay' Deo
1785de0f31 remove hdf5 which is silo actually a silo dependency 2016-05-04 22:08:01 -04:00
Erik Schnetter
27de2a42d9 Update Flex to 2.6.0 2016-05-04 20:27:58 -04:00
Greg Lee
514a8c737a added git commit for clang support 2016-05-04 16:38:43 -07:00
Dhanannjay 'Djay' Deo
32f7b06a36 Add version 2.10.2 2016-05-04 18:14:38 -04:00
Patrick Gartung
67d64b804f more succinctly 2016-05-04 23:53:10 +02:00
Robert.French
bfe009f98d Subversion uses serf for http repos 
Add Scons package

Add serf package

Subversion uses serf for http repos
 2016-05-04 16:16:36 +00:00
Denis Davydov
796bf5f85c mvapich2: add self.spec.[mpicc|mpicxx|mpifc|mpif77] 2016-05-04 17:33:19 +02:00
Patrick Gartung
7eb463a66e only fail when it is apples clang 2016-05-04 15:05:56 +02:00
Denis Davydov
f417b1cf90 p4est: use mpicc,mpicxx,mpifc,mpif77 compiler variables instead of hardcoding names 2016-05-04 11:51:45 +02:00
Denis Davydov
c3317819cb mpi: add self.spec.[mpicc|mpicxx|mpifc|mpif77] to avoid hardcoding MPI wrappers names 2016-05-04 10:37:52 +02:00
Adam J. Stewart
88fa9084e2 Add latest version of GCC 2016-05-03 15:58:14 -05:00
Adam J. Stewart
a3d2d0cd22 Add latest OpenSSL versions 2016-05-03 15:44:23 -05:00
Adam J. Stewart
eaa45d8a9a Remove hdf5 ~cxx constraint on netcdf 2016-05-03 13:28:38 -05:00
Kelly (KT) Thompson
f4260da1c2 Mark SuperLU_DIST version 4.3 as the preferred version since petsc and trilinos are not tested with 5.0. 2016-05-03 12:05:35 -06:00
Adam J. Stewart
51c6867f72 Re-add hwloc as a dependency of openmpi 2016-05-03 10:30:35 -05:00
Erik Schnetter
40d578be95 Disable OpenBLAS's overriding of our "make -jN" option 2016-05-03 10:38:05 -04:00
Denis Davydov
0583bc9859 p4est: put back +tests variant 2016-05-03 16:21:10 +02:00
Denis Davydov
98f8192bde libtool: add a missing dependency 2016-05-03 15:15:55 +02:00
Kelly (KT) Thompson
89621faaea + Add version 5.0 download for SuperLU_DIST. 2016-05-02 20:21:03 -06:00
David Poliakoff
e74cc0df27 Updated docstring 2016-05-02 15:53:43 -07:00
David Poliakoff
afef04bb54 Added cnmem package` 2016-05-02 15:49:37 -07:00
David Poliakoff
179d308fe0 Added a package for the RAJA system 2016-05-02 14:32:57 -07:00
Todd Gamblin
372a455bea Merge pull request #873 from jppelteret/bugfix/paradiseo 
Add extra dependencies for Paradiseo
 2016-05-02 09:57:30 -07:00
Todd Gamblin
aa7444cd3d Merge pull request #870 from jppelteret/bugfix/glm 
Add missing dependency for glm
 2016-05-02 09:57:11 -07:00
Todd Gamblin
4fecf33416 Merge pull request #877 from vishalkenchan/develop 
bugfix: missing dependencies (m4) added for netcdf and autoconf
 2016-05-02 09:56:44 -07:00
Denis Davydov
2eb4248f90 dealii: fix a bug where P4EST_DIR was unconditionally requested 2016-05-02 18:53:13 +02:00
Denis Davydov
cde1d18399 dealii: add new dependency -- gsl 2016-05-02 18:53:13 +02:00
Todd Gamblin
999dda8f83 Merge pull request #708 from adamjstewart/fixes/qt 
Prevent use of system GTK+
 2016-05-02 09:41:51 -07:00
Todd Gamblin
568800c045 Merge pull request #875 from jppelteret/features/adol-c 
Added Adol-C package
 2016-05-02 09:30:23 -07:00
Adam J. Stewart
7255f6969b Merge branch 'develop' into features/argcomplete 2016-05-02 11:29:52 -05:00
Adam J. Stewart
17fa1b5007 Un-fix version 3 2016-05-02 11:28:20 -05:00
Adam J. Stewart
61e5ee5d63 Prevent use of system GTK+ 2016-05-02 11:28:20 -05:00
Massimiliano Culpo
cfc25d0a92 Merge branch 'develop' into openmpi_variants 2016-05-02 18:26:05 +02:00
Adam J. Stewart
9c3d8dae57 Add latest jpeg version 2016-05-02 11:17:38 -05:00
Adam J. Stewart
4e2154e58f Add argcomplete python package 2016-05-02 11:16:29 -05:00
Adam J. Stewart
c110865bf2 Remove OpenMPI dependency on hwloc 2016-05-02 11:06:33 -05:00
Adam J. Stewart
b99c8b641a Add hydra package 2016-05-02 11:06:33 -05:00
Vishal Boddu
e111add17f missing dependencies (m4) added for netcdf and autoconf 2016-05-02 14:31:02 +02:00
Jean-Paul Pelteret
5ae7276682 Fixes to installation with OpenMP (tested) and execution of test-suite 2016-05-02 11:01:14 +02:00
Jean-Paul Pelteret
631e235ef3 Added Adol-C package 2016-05-01 11:07:42 +02:00
Jean-Paul Pelteret
c33ffbae04 Add extra dependencies for Paradiseo. 2016-04-30 22:25:14 +02:00
Patrick Gartung
83108f815c Error out if +openmp used with OS X clang 2016-04-30 13:18:32 -05:00
Patrick Gartung
f8c14e1d98 Make openmp variant false by default. 2016-04-30 13:18:32 -05:00
Patrick Gartung
a588a1fd84 openmp needs to be an option for clang build 2016-04-30 13:18:32 -05:00
Jean-Paul Pelteret
8fc43046eb Add missing dependency for glm 2016-04-30 12:11:10 +02:00
Denis Davydov
3ad71700dd the_silver_searcher: add missing dependency 2016-04-29 09:52:49 +02:00
Denis Davydov
176b9febb4 libxcb: add missing dependencies 2016-04-29 09:06:15 +02:00
Denis Davydov
17f696d3b3 glib: add missing dependencies 2016-04-29 09:05:54 +02:00
Todd Gamblin
1b731e525f Merge pull request #703 from epfl-scitas/fixes/openssl_external 
fix : no warning when installing 'openssl@external'
 2016-04-28 10:25:35 -07:00
Todd Gamblin
b75a3e112b Merge pull request #855 from citibeth/efischer/160427-OpenblasFix 
openblas: Added +fpic variant to package.
 2016-04-28 10:19:36 -07:00
Gregory Becker
ae5198e5e7 Merged in current develop to cflags 042716 2016-04-27 19:38:51 -07:00
Elizabeth F
71ca837ada Add '+fpic' variant. 2016-04-27 20:36:41 -04:00
Elizabeth F
62d806d512 hdf5: Set preferred version, so as to not break NetCDF (for now). 2016-04-27 19:03:26 -04:00
Elizabeth F
ee6a75c9b5 Added missing -lpthread to OpenBLAS check. 
See: https://github.com/xianyi/OpenBLAS/wiki/faq#static_link
 2016-04-27 18:44:54 -04:00
Todd Gamblin
92afa52eec Merge pull request #804 from jppelteret/features/paradiseo 
Added package for Paradiseo.
 2016-04-26 13:00:09 -07:00
Todd Gamblin
d1a9328793 Merge pull request #824 from adamjstewart/features/ior 
Add IOR benchmark package
 2016-04-26 12:48:57 -07:00
Erik Schnetter
55d339194d Update hwloc to 1.11.3 2016-04-26 15:29:16 -04:00
Todd Gamblin
1d2916da8c Merge pull request #829 from davydden/openblas_unit_test 
openblas: a small unit test to make sure Lapack symbols are compiled
 2016-04-26 10:47:35 -07:00
Todd Gamblin
7fc69a6b51 Merge pull request #838 from davydden/dealii_dependencies 
dealii: add missing dependencies
 2016-04-26 10:34:00 -07:00
Todd Gamblin
237c843621 Merge pull request #837 from davydden/p4est_dependencies 
p4est: add missing dependencies
 2016-04-26 10:33:46 -07:00
Todd Gamblin
ef0fefc506 Merge pull request #836 from davydden/astyle_fix 
astyle: fix installation of the binary
 2016-04-26 10:33:24 -07:00
Todd Gamblin
9fb514ff81 Merge pull request #828 from glennpj/csvkit 
Add py-csvkit package
 2016-04-26 10:32:27 -07:00
Glenn Johnson
dfc0efa8ed Put f2py of py-numpy in python ignore list. (#827) 
There are many python packages that depend on py-numpy. Each one of
those will have a copy of f2py that will need to be put in the ignore
list for activation. Thise PR adds f2py to the ignore list in the python
package.py file so that it does not have to be done for each package
that depends on py-numpy. This follows the model of what is done for
py-setuptools.

This PR also removes the f2py ignore expression for python packages
that were using it as it is no longer needed in the individual packages.
 2016-04-26 10:32:14 -07:00
Glenn Johnson
b56bfcea96 Add the turbomole package. (#826) 
* Add the turbomole package.
This package has three modes of operation that need to be selected
independently. This is handled with spack vaiants. Turbomole has a builtin MPI
implementation so it does not need to depend on an mpi provider when using the
+mpi variant.

* Whitespace cleanup.
 2016-04-26 10:31:48 -07:00
Joseph Ciurej
8ec5e81186 Update Package : Zoltan (#833) 
* Added preliminary implementations for the debug and shared variants.

* Fixed a few problems with the '+shared' variant of the Zoltan package.
Added support for a few more important Zoltan package versions.

* Fixed a minor compiler incompatibility issue with the '+shared+mpi' variants.
 2016-04-26 10:24:36 -07:00
jppelteret
8e227f603d Fix: Add missing dependencies for gmp and eigen (#830) 
See https://groups.google.com/forum/#!topic/spack/9JMDwafjBUs
 2016-04-26 10:01:09 -07:00
Geoffrey Oxberry
f70046e6b7 MFEM version 3.1 (#749) 
MFEM is a free, lightweight, scalable C++ library for finite element
methods.

Includes lapack, hypre, metis, suite-sparse, mpi variants & tests for
serial and parallel versions.
 2016-04-26 10:00:24 -07:00
Denis Davydov
0ff4120692 dealii: add missing dependencies 2016-04-26 15:06:21 +02:00
Denis Davydov
8a45aa4185 p4est: add missing dependencies 2016-04-26 12:52:49 +02:00
Denis Davydov
168f9c46ea astyle: fix installation of the binary 2016-04-26 09:18:39 +02:00
Jean-Paul Pelteret
17b7305086 Added package for Paradiseo. 2016-04-26 09:12:27 +02:00
Elizabeth Fischer
1a585a6c74 Added nccmp package 2016-04-25 22:25:08 -04:00
Denis Davydov
dd37959899 output with new lines 2016-04-25 16:21:19 +02:00
Denis Davydov
42be50d10b add a test/output pair 2016-04-25 13:53:41 +02:00
Denis Davydov
b81cb554f5 openblas: a small unit test to make sure Lapack symbols are compiled 2016-04-25 13:30:20 +02:00
Glenn Johnson
2b7b7f6d97 Reformat description text. 2016-04-24 18:11:18 -05:00
Glenn Johnson
4e671c54ee Reformat the description. 2016-04-24 18:06:51 -05:00
Glenn Johnson
797af2e80f Add py-csvkit package 
This adds the py-csvkit package and needed dependencies for working with
csv files.
 2016-04-24 17:39:49 -05:00
Adam J. Stewart
a7ffffc336 Change homepage, explicitly disable 2016-04-24 17:14:33 -05:00
Adam J. Stewart
22e4ee5604 Add OSU Micro-Benchmarks package (#822) 
* Add OSU Micro-Benchmarks package

* Add workaround for GCC bug
 2016-04-23 13:29:47 -07:00
Ben Boeckel
e32416430c Update git (#819) 
* git: update to 2.8.0 final and add 2.8.1

* git: hard-depend on curl and expat

HTTP-based cloning is very prevalent now.
 2016-04-23 12:18:58 -07:00
Elizabeth Fischer
248248c6b2 Added package: NCView (#791) 
* ncview: Added package

* Removed FIXMEs
 2016-04-23 12:15:53 -07:00
Erik Schnetter
4e062d86b4 Refine wget's OpenSSL configuration options (#786) 2016-04-23 12:15:32 -07:00
Joseph Ciurej
d701d2ccf3 Updated the Swig package file to include versions for all of the popular Swig releases. (#790) 2016-04-23 12:15:14 -07:00
Glenn Johnson
62d175c984 This commit explicitly sets libdir. This is necessary because different 
systems use different defaults.
 2016-04-23 12:30:34 -05:00
Erik Schnetter
0cbaecca60 Don't use subprocess module 2016-04-22 21:52:11 -04:00
Adam J. Stewart
e7d2fa7084 Add IOR benchmark package 2016-04-22 12:30:24 -05:00
Ben Boeckel
5c4bb69af9 xerces-c: update to 3.1.3 (#811) 
The 3.1.2 tarball seems to have gone missing. Also switch to using bz2
rather than gz to reduce the download size.
 2016-04-21 19:29:20 -07:00
Denis Davydov
ef9347bcfb dealii: set DEAL_II_DIR when loading a module (#816) 2016-04-21 19:25:17 -07:00
Erik Schnetter
867e1333d0 Remove outdated comment 2016-04-20 17:01:26 -04:00
Erik Schnetter
7c155f7456 Check the installed HDF5 library for consistency 2016-04-20 16:33:59 -04:00
Erik Schnetter
1acb2a1a09 Add some qthreads patches 2016-04-19 16:45:05 -04:00
Jim Galarowicz
44321c5c24 Update the main Krell Institute and Argo Navis Tech. packages for MPI variant support, get source from github not sourceforge, tested external package usage, and general package clean-up 2016-04-18 16:46:15 -07:00
Kelly Thompson
dd84a57580 + On some systems, Dia also requires intltool. (#768) 2016-04-17 07:15:47 +02:00
Ben Boeckel
63bade7a0c metis: fix OS X install (#764) 
Without this, the binaries use relative paths for loading which causes
them to not be found when running binaries. Not sure why the existing
hack wasn't working, but this fixes it the proper way.
 2016-04-17 07:15:07 +02:00
Erik Schnetter
375de085e2 Make PAPI build on Darwin (#772) 
* Make PAPI build on Darwin

- don't use <malloc.h>
- run install_name_tool

* Use fix_darwin_install_name
 2016-04-17 07:14:34 +02:00
Erik Schnetter
fb4f361cd0 Update to version 4.1.0 (#785) 2016-04-17 07:12:52 +02:00
Kelly Thompson
523be30974 + Add CMake version 3.5.2. (#787) 2016-04-17 07:11:19 +02:00
Erik Schnetter
a25e33d96e Create lib directory 2016-04-17 06:50:15 +02:00
Elizabeth F
e03e87b791 1. Added variants to choose language interfaces. 2. Now produces relocatable code (+fpic) by default 2016-04-16 00:57:57 -04:00
Todd Gamblin
69f8d8fa7a Merge pull request #783 from adamjstewart/features/elk 
Add Elk package
 2016-04-14 18:34:03 +02:00
Adam J. Stewart
cf1914fc00 Also install species directory 2016-04-14 10:18:06 -05:00
Todd Gamblin
a73b7052c9 Merge branch 'osx-fixes' of git://github.com/mathstuf/spack into mathstuf-osx-fixes 2016-04-14 15:25:24 +02:00
Todd Gamblin
9e456acbab Merge pull request #779 from LLNL/bugfix/binutils-deps 
binutils depends on flex and bison.
 2016-04-14 15:23:35 +02:00
Todd Gamblin
01fab24c15 binutils depends on flex, bison, and m4 2016-04-14 11:47:35 +02:00
Todd Gamblin
d6a232dbe0 Merge pull request #767 from mathstuf/paraview-fixes 
Paraview fixes
 2016-04-14 11:29:46 +02:00
Todd Gamblin
f8543f7755 Merge pull request #780 from adamjstewart/fixes/hdf5 
fortran2003 option has been removed from HDF5
 2016-04-14 11:20:11 +02:00
Todd Gamblin
420a61491d Merge pull request #781 from jgalarowicz/qt3-fixes 
Fix compile issues with new libpng versions and qt3 builds by using a…
 2016-04-14 09:46:58 +02:00
Todd Gamblin
2bffd569d7 Merge pull request #782 from jgalarowicz/update-mrnet 
Update mrnet with new version source recognition and add krell related patch controlled by a variant.
 2016-04-14 09:45:40 +02:00
Jim Galarowicz
f9aafeee1e Loosen the boost requirement from a specific version that was specified in my initial commit. 2016-04-13 21:58:57 -07:00
Jim Galarowicz
2cf9ebc62c Fix compile issues with new libpng versions and qt3 builds by using an older version of libpng. In libpng, make older versions available. 2016-04-13 15:00:45 -07:00
Adam J. Stewart
5717cb981e fortran2003 option has been removed from HDF5 2016-04-13 15:03:03 -05:00
Todd Gamblin
2fe9bfcd82 Merge pull request #773 from eschnett/eschnett/julia 
Update Julia
 2016-04-13 12:02:19 +02:00
Todd Gamblin
c96dd43174 Merge pull request #776 from adamjstewart/features/pnetcdf 
Add latest version of PnetCDF
 2016-04-13 01:29:37 +02:00
Tom Scogland
04392babca add setuptools version 20.7.0 2016-04-12 15:59:20 -07:00
Todd Gamblin
7acc7c4dae Merge pull request #712 from Rombur/fix_pysetuptools 
Replace py-setuptools version 20.5 by version 20.6.7
 2016-04-13 00:54:51 +02:00
Adam J. Stewart
abe744c5a0 Add latest version of PnetCDF 2016-04-12 16:53:45 -05:00
Adam J. Stewart
01f2dd03d5 Also install examples directory 2016-04-12 16:51:27 -05:00
Adam J. Stewart
cb6c6fb374 Add elk package 2016-04-11 16:28:30 -05:00
Erik Schnetter
882e2e42cf Merge branch 'develop' into eschnett/julia 2016-04-11 15:40:27 -04:00
Erik Schnetter
df7e3f8635 Correct version dependency for OpenBLAS patch 2016-04-09 09:58:48 -04:00
Massimiliano Culpo
6cffac79bd openmpi : added a few variants 2016-04-09 11:21:29 +02:00
Ben Boeckel
20b9f34b5c paraview: use internal hdf5 
Spack's HDF5 is too new. Rather than forcing everything in a ParaView
chain to use older HDF5, use the internal one until ParaView is patched
properly.
 2016-04-08 15:09:02 -04:00
Ben Boeckel
6e56ba9f24 paraview: use internal netcdf 
VTK needs to learn to cope with netcdf being split like this.
 2016-04-08 15:08:29 -04:00
Ben Boeckel
3a4aac0213 paraview: use the right cmake variables 2016-04-08 15:08:09 -04:00
Erik Schnetter
f461b99722 Building OpenBLAS requires recent binutils 2016-04-08 14:31:40 -04:00
Ben Boeckel
9eaf735bcd py-setuptools: add 20.6.7 2016-04-08 12:03:45 -04:00
Ben Boeckel
dcd6b19348 py-setuptools: sort versions 2016-04-08 12:03:36 -04:00
Ben Boeckel
6c409d6b92 py-matplotlib: depend on pkg-config 
On OS X, freetype isn't found by default, but pkg-config can.
 2016-04-08 12:03:05 -04:00
Ben Boeckel
7d19154e18 pkg-config: use the internal glib 
glib requires pkg-config itself, so on machines without pkg-config,
there's a bootstrapping problem.
 2016-04-08 12:01:28 -04:00
Todd Gamblin
e73caad0d7 Merge pull request #747 from KineticTheory/pkg-global 
Package global depends on ncurses
 2016-04-07 00:20:15 -07:00
Glenn Johnson
8a7f34665b Make sure base bioconductor package can be installed. 2016-04-06 23:05:49 -05:00
Geoffrey Oxberry
bbd328d307 metis 5: fix download url 
Spack picks up the wrong download for metis 5.1.0 from parsing
the url field for metis 4.0.3. Add an explicit url field to fix
this bug.
 2016-04-06 16:58:48 -07:00
Todd Gamblin
4437bae16d Merge pull request #750 from goxberry/metis-4.0.3 
metis 4.0.3
 2016-04-06 16:05:02 -07:00
Todd Gamblin
cac819766e Merge pull request #755 from adamjstewart/features/bash 
Add bash package
 2016-04-06 16:02:10 -07:00
Todd Gamblin
25d48f700c Merge pull request #752 from KineticTheory/pkg-netlib-lapack 
Second attempt at PR#741
 2016-04-06 16:01:33 -07:00
Geoffrey Oxberry
ddaba07d82 metis 4.0.3 
Add version 4.0.3 to metis package. Attempted to implement reasonable
versions of all variants declared for metis@5.1.0; some of these do
not have analogues in metis@4.0.3, and errors are raised accordingly.

Also updated dependencies of packages with depends_on('metis') to
depends_on('metis@5:') to ensure that these packages still build.
 2016-04-06 15:49:59 -07:00
Glenn Johnson
32779ab1f6 Add r-filehash to test version naming. 2016-04-06 17:02:34 -05:00
Massimiliano Culpo
c113d390a7 mvapich2 : MPI compiler wrapper will use spack compilers during the installation phase 
mpich : fixed wrong function signature
 2016-04-06 23:51:47 +02:00
Glenn Johnson
fbabfc593d Make R extensable and add a couple of packages for verification. 
Added R as a build system so that the create template will have the
correct configure line.
Added a regex for version parsing as the R URLs are a little odd.
 2016-04-06 16:44:22 -05:00
Adam J. Stewart
380a2b23e6 Add bash package 2016-04-06 15:57:03 -05:00
Kelly (KT) Thompson
71e9f1ab8d + I am resubmitting this proposed change because it was accidentally 
overwritten. These modifications were accepted as PR#741 but somehow I
  clobbered them when PR#742 was merged. There was some unintentional overlap in
  my local repository that I didn't straighten out before pushing.
 2016-04-06 09:52:09 -06:00
Todd Gamblin
3c8e055ed0 Merge pull request #751 from davydden/openblas_fix_compiler 
openblas: provide basename of compilers to avoid issues with detectio…
 2016-04-06 02:47:37 -07:00
Denis Davydov
9b3c7b8afa openblas: provide basename of compilers to avoid issues with detection of Fortran 2016-04-06 10:55:59 +02:00
Dhanannjay 'Djay' Deo
071548a62f Building VisIt with silo 2016-04-05 23:16:57 -04:00
Dhanannjay Deo
f221f64509 Add variant for shared library 2016-04-05 23:11:18 -04:00
Dhanannjay Deo
c3c70cf704 Install lite pdb headers 2016-04-05 23:11:18 -04:00
Kelly (KT) Thompson
340ad44aab Merge remote-tracking branch 'upstream/develop' into pkg-exuberant-ctags 2016-04-05 13:31:06 -06:00
Dhanannjay Deo
2e05830eb1 Constrain to vtk6.1 qt4.8.6 and opengl1 rendering backend 2016-04-05 15:12:06 -04:00
Dhanannjay Deo
872f049b30 create visit package 2016-04-05 15:12:06 -04:00
Kelly (KT) Thompson
21ad5162c4 + Global requires ncurses. 2016-04-05 11:53:37 -06:00
Todd Gamblin
8ef9d68542 Merge pull request #726 from citibeth/efischer/160402-Qt 
Removed useless url in qt
 2016-04-05 10:51:12 -07:00
Jim Galarowicz
0ebb192b2f Update the MRNet package with the latest source and patch related to the krell tools needs. Also, reorder the list of version to match with the spack standard: newest to oldest. 2016-04-05 10:36:20 -07:00
Jim Galarowicz
ffed252df4 Merge remote-tracking branch 'upstream/develop' into develop 2016-04-05 10:31:41 -07:00
Erik Schnetter
a87ae5173f Update Julia 
- allow checking out the master branche
- add dependencies requires by important Julia package
- add OpenBLAS patch
 2016-04-05 09:05:46 -04:00
Todd Gamblin
faf4a1e370 Merge pull request #740 from glennpj/scikit 
Scikit
 2016-04-04 23:11:04 -07:00
Todd Gamblin
b09d87970c Merge pull request #742 from KineticTheory/pkg-dia 
Provide dia
 2016-04-04 23:09:41 -07:00
Todd Gamblin
cefcbfea8e Merge pull request #743 from eschnett/eschnett/netlib-scalapack 
Require cmake
 2016-04-04 23:09:24 -07:00
Todd Gamblin
c010a6f8b0 Merge pull request #728 from eschnett/eschnett/hdf5-1.10 
Update HDF5 to 1.10.0
 2016-04-04 23:09:08 -07:00
Glenn Johnson
c546b75443 Add missing dependency on py-setuptools for 
- py-dask
- py-decorator
 2016-04-04 19:23:48 -05:00
Jim Galarowicz
9d2ef9f453 Merge remote-tracking branch 'upstream/develop' into develop 2016-04-04 17:07:53 -07:00
Glenn Johnson
2b3a8a4a5a Add missing dependencies. 2016-04-04 19:01:44 -05:00
Erik Schnetter
aaf2830b8b Require cmake 2016-04-04 19:40:05 -04:00
Kelly (KT) Thompson
48d70d960c + Provide dia, a program for drawing structured diagrams. 2016-04-04 17:11:04 -06:00
Todd Gamblin
3404a61ebf Merge pull request #714 from goxberry/ipopt-3.12.4 
Add ipopt v3.12.4 package.
 2016-04-04 13:42:37 -07:00
Todd Gamblin
2fd2a5403f Merge pull request #711 from goxberry/mumps-add-libexec 
Add mpiseq headers to MUMPS installation (was: Add libexec dir to MUMPS installation)
 2016-04-04 13:41:55 -07:00
Kelly (KT) Thompson
cd3086f78d + Since CBLAS is only provided in 3.6.0 or later, modify package.py to on refer to CBLAS when the latest release is requested. 2016-04-04 14:35:09 -06:00
Glenn Johnson
9c60f122a6 New package - py-scikit-image (http://scikit-image.org/). 2016-04-04 14:02:55 -05:00
Glenn Johnson
8404f084c8 New package - py-networkx (https://networkx.github.io/). 2016-04-04 14:02:55 -05:00
Glenn Johnson
a10ab78e28 New package - py-decorator (https://github.com/micheles/decorator). 2016-04-04 14:02:55 -05:00
Glenn Johnson
3a4210e9d7 New package - py-dask (http://dask.pydata.org). 2016-04-04 14:02:55 -05:00
Glenn Johnson
d0ca3952a3 Add version 0.17.1 of scikit-learn. 2016-04-04 14:02:54 -05:00
Erik Schnetter
badf5b047b Calculate version string in a function 2016-04-04 14:42:36 -04:00
Jim Galarowicz
6ebed7a2a6 Add release 9.1.0 recognition to the Dyninst API package file. 2016-04-04 11:23:51 -07:00
Todd Gamblin
220fb068aa Merge pull request #724 from davydden/metis_suitesparse_dealii 
Metis and suitesparse fixes
 2016-04-04 11:20:53 -07:00
Todd Gamblin
5084130e71 Merge pull request #715 from citibeth/efischer/160401-EnvironmentModules 
Added Environment Modules
 2016-04-04 10:41:54 -07:00
Jim Galarowicz
e0b9f79b9b Add changes that remove unsupported libraries from the boost build libraries list based on the boost version numbers. Libraries that are removed include: log - for versions of boost 1.53.0 and older - :atomic - for versions of boost 1.52.0 and older - :locale for versions of boost 1.49.0 and older - :chrono - for versions of boost 1.48.0 and older - and :random - for versions of boost 1.44.0 and older. 2016-04-04 10:33:03 -07:00
Todd Gamblin
a8b856432a Merge pull request #716 from citibeth/efischer/160401-TclTk 
Fixed TCL/Tk
 2016-04-04 10:24:11 -07:00
Todd Gamblin
266f64d848 Merge pull request #725 from citibeth/efischer/160402-NetCDFCXX 
Added deprecation warning to netcdf-cxx
 2016-04-04 10:18:15 -07:00
Todd Gamblin
2d49842cd1 Merge pull request #730 from citibeth/efischer/160403-PyPillow 
[WIP] py-pillow: Updated for variants
 2016-04-04 10:15:59 -07:00
Todd Gamblin
bd005b6ba6 Merge pull request #727 from glennpj/sympy 
Added version 1.0 of sympy.
 2016-04-04 10:14:13 -07:00
Todd Gamblin
6755c397c9 Merge pull request #729 from citibeth/efischer/160403-LibxcbDependency 
libxcb: Added comments on two dependencies Spack does not yet know ho…
 2016-04-04 10:13:45 -07:00