Commit graph

31494 commits

Author SHA1 Message Date
Massimiliano Culpo
e483762015
Update RtD and Sphinx configuration (#38046) 2023-06-05 17:39:11 +02:00
Houjun Tang
5840a00000
Update package.py require HDF5 1.14+ (#38026) 2023-06-05 11:27:53 -04:00
George Young
110f836927
fastqc: add 0.12.1, update patch files (#37934)
* fastqc: add 0.12.1

* fastqc: add 0.12.1

* Update var/spack/repos/builtin/packages/fastqc/package.py

Yeah, had considered doing the same, I'd just opted to maintain the status quo. All good.

Co-authored-by: Alec Scott <alec@bcs.sh>

* Update package.py

Style fiddles to make the bot contented.

---------

Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk>
Co-authored-by: Alec Scott <alec@bcs.sh>
2023-06-05 11:07:51 -04:00
Weiqun Zhang
d6765f66ae
amrex: add version 23.06 (#38056) 2023-06-05 07:44:32 -07:00
Alec Scott
19dac780e8
iozone: add v3_506 (#38118) 2023-06-05 13:00:23 +02:00
Alec Scott
b82b549c59
iqtree2: add v2.2.2 (#38119) 2023-06-05 13:00:06 +02:00
Alec Scott
b376401ece
jimtcl: add v0.82 (#38120) 2023-06-05 12:59:48 +02:00
Alec Scott
7d956dbe9e
jline3: add v3.22.0 (#38121) 2023-06-05 12:59:32 +02:00
Alec Scott
6db1d84bb0
kubernetes: add v1.27.2 (#38123) 2023-06-05 12:58:47 +02:00
Alec Scott
2094fa3056
simde: add v0.7.6 (#38157) 2023-06-05 06:38:46 -04:00
Alec Scott
3d255bc213
leptonica: add v1.83.1 (#38125) 2023-06-05 12:36:16 +02:00
Alec Scott
5538dda722
libcint: add v5.3.0 (#38127) 2023-06-05 12:36:02 +02:00
Alec Scott
1c0d89bf25
libeatmydata: add v131 (#38128) 2023-06-05 12:35:46 +02:00
Alec Scott
4cc0199fbb
libibumad: add v46.0 (#38130) 2023-06-05 12:35:33 +02:00
Alec Scott
edb8226fff
librdkafka: add v2.1.1 (#38131) 2023-06-05 12:35:20 +02:00
Alec Scott
ef972cf642
libspiro: add v20221101 (#38132) 2023-06-05 12:35:03 +02:00
Alec Scott
50c13541e4
libgd: add v2.3.3 (#38129) 2023-06-05 06:29:32 -04:00
Alec Scott
fd5d7cea6e
perl-math-bigint: add v1.999838 (#38150) 2023-06-05 06:29:15 -04:00
Alec Scott
526314b275
laszip: add v3.4.3 (#38124) 2023-06-05 06:29:00 -04:00
Alec Scott
7b37c30019
libthai: add v0.1.29 (#38133) 2023-06-05 11:28:44 +02:00
Alec Scott
dc03c3ad9e
libvori: add v220621 (#38135) 2023-06-05 11:26:58 +02:00
Alec Scott
61b485f75d
lsscsi: add v0.32 (#38136) 2023-06-05 11:26:42 +02:00
Alec Scott
e24151783f
ltp: add v20230127 (#38137) 2023-06-05 11:25:55 +02:00
Alec Scott
ed9714e5ae
mariadb-c-client: add v3.3.5 (#38140) 2023-06-05 11:25:22 +02:00
Alec Scott
ea620a083c
nco: add v5.1.6 (#38143) 2023-06-05 11:24:54 +02:00
Alec Scott
504a8be666
nettle: add v3.9.1 (#38144) 2023-06-05 11:24:34 +02:00
Alec Scott
d460870c77
ngmlr: add v0.2.7 (#38145) 2023-06-05 11:24:19 +02:00
Alec Scott
f0f77251b3
nim: add v1.9.3 (#38146) 2023-06-05 11:24:00 +02:00
Alec Scott
bdd454b70b
openexr: add v3.1.7 (#38147) 2023-06-05 11:23:26 +02:00
Alec Scott
aea6662774
pgdspider: add v2.1.1.5 (#38151) 2023-06-05 11:22:41 +02:00
Alec Scott
fe6bcb36c7
primer3: add v2.6.1 (#38152) 2023-06-05 11:22:22 +02:00
Alec Scott
2474a2efe1
sbt: add v1.8.3 (#38154) 2023-06-05 11:22:06 +02:00
Alec Scott
4cfd49019c
signify: add v31 (#38156) 2023-06-05 11:20:04 +02:00
Alec Scott
7beae8af30
madx: add v5.09.00 (#38139) 2023-06-05 11:19:37 +02:00
Umashankar Sivakumar
22fc5d2039
papi: update git URL (#38042) 2023-06-05 11:13:17 +02:00
Alec Scott
b70fc461a4
at-spi2-core: add v2.48.3 (#38162) 2023-06-05 11:09:57 +02:00
Alec Scott
e756436d7c
grep: add v3.11 (#38163) 2023-06-05 11:09:34 +02:00
Alec Scott
8dd87e2572
hugo: add v0.112.7 (#38164) 2023-06-05 11:09:12 +02:00
Manuela Kuhn
853bf95bd2
py-ipython: add 8.14.0 (#38113) 2023-06-04 22:18:00 -04:00
Manuela Kuhn
1c80d07fd2
py-iso8601: add 1.1.0 (#38110) 2023-06-04 22:07:43 -04:00
Manuela Kuhn
6fd8001604
py-ipykernel: add 6.23.1 (#38111) 2023-06-04 21:52:55 -04:00
Pariksheet Nanda
c08f9fd6fc
py-jaxlib: patch bazel server cpu limit (#37548) (#38090) 2023-06-04 19:28:41 -04:00
Adam J. Stewart
c3fb998414
GMT: add new versions (#37921)
* GMT: add new versions

* [@spackbot] updating style on behalf of adamjstewart

---------

Co-authored-by: adamjstewart <adamjstewart@users.noreply.github.com>
2023-06-04 18:00:49 -05:00
George Young
3368a98210
py-htseq: add 2.0.3, switch to PyPI (#37935)
* py-htseq: add 0.12.3, switching over to new GitHub repo

* py-htseq: add 0.12.3, switching over to new GitHub repo

Style fixes

* py-htseq: add 2.0.3, switch to PyPI

* py-htseq: add 2.0.3, switch to PyPI

* Update package.py

* Update var/spack/repos/builtin/packages/py-htseq/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Removing SWIG

---------

Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-06-04 17:55:16 -05:00
Manuela Kuhn
606b7c7f16
py-hatch-fancy-pypi-readme: add 23.1.0 (#38075) 2023-06-04 17:30:33 -05:00
Manuela Kuhn
2f4e66be09
py-hatchling: add 1.17.0 (#38076) 2023-06-04 17:29:40 -05:00
Manuela Kuhn
9ce3e8707c
py-humanize: add 4.6.0 (#38077) 2023-06-04 17:28:45 -05:00
Manuela Kuhn
d6a96745ee
py-identify: add 2.5.24 (#38088) 2023-06-04 17:27:47 -05:00
Manuela Kuhn
a0fcdd092b
py-imageio: add 2.30.0 (#38089) 2023-06-04 17:27:08 -05:00
Christoph Junghans
e17d09e607
votca: stable branch was removed (#38043) 2023-06-04 17:26:02 -05:00