* fix ipyrad numpy depedencies
ipyrad versions through 0.9.90 use np.int, which is deprecated in numpy 1.20.
* fix whitespace
* Correct numpy dependency restrictions
Fix two separate problems:
1. We want to always visit parents before children while creating views
(when it comes to ignoring conflicts, the first instance generated in
the view is chosen, and we want the parent instance to have precedence).
Our preorder traversal does not guarantee that, but our topological-
order traversal does.
2. For copy style views with packages x depending on y, where
<x-prefix>/foo is a symlink to <y-prefix>/foo, we want to guarantee
that:
* A conflict is not registered
* <y-prefix>/foo is chosen (otherwise, the "foo" symlink would become
self-referential if relocated relative to the view root)
Note that
* This is an exception to [1] (in this case the dependency instance
overrides the dependent)
* Prior to this change, if "foo" was ignored as a conflict, it was
possible to create this self-referential symlink
Add tests for each of these cases
* Sqlite requires the user to provide a command line arg (DYNAMIC_SHELL)
to export shared symbols to import lib from .def
* Add other options recommended by Sqlite docs:
https://github.com/sqlite/sqlite/blob/master/doc/compile-for-windows.md
* Some of these options mean we can restore variants that were
disabled for Windows (fts, functions, rtree).
* Updated with generic test functions
* Added level_zero test
As the compiler is not installed by TAU, it should be loaded first and run with --dirty. Will check if there is a way to make it work without --dirty.
* Update var/spack/repos/builtin/packages/tau/package.py
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
---------
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
The main script body is over-written for power. Putting thet timing
aggregation in the after script allows it to be called on all of the
current pipelines.
* Update package.py
Add support for OpenSubdiv 3.5.x
* Fixed Dependencies
I was getting errors about cmake not being able to find `xf86vm`, and adding a dependency on `libxxf86vm` fixes it.
Sometimes the logs are too long and the copy & paste command is not
shown. In that case I'd like to just copy the failing GitLab job URL in
my browser to `spack reproduce-build <url>`.
Currently, the `SpackSolverSetup` and the `PyclingoDriver` are more coupled than necessary:
1. The driver object needs a setup object to be injected during a solve,
2. And the setup object will get a reference back to the driver
This design is necessary because we use the low-level `clingo.backend` interface to setup our problem. This interface though is meant to bypass the grounder and add symbols directly in the grounded table, which is a feature we don't currently use.
The PR simplifies the encoding by having the setup object returning the problem-specific facts / rules as a list of strings, and the driver ingesting them using the [clingo.Control.add](https://potassco.org/clingo/python-api/5.6/clingo/control.html#clingo.control.Control.add) method. This removes any use of the low level interface.
Using this encoding makes it easy to hash the output of the setup phase, since it is returned as a string.
* py-nbconvert: avoid install-time downloads
* install css files as resources for py-nbconvert
* Update var/spack/repos/builtin/packages/py-nbconvert/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Update package.py
* py-nbconvert: update dependencies for 7.14.1
* [@spackbot] updating style on behalf of AlexanderRichert-NOAA
* Update var/spack/repos/builtin/packages/py-nbconvert/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Update resources & remove style.min.css file
* Update package.py
* [@spackbot] updating style on behalf of AlexanderRichert-NOAA
---------
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
This "breaks" the deprecated schema by allowing unknown attributes
to the attributes section of the job types. The breaking change here is
that deprecated stacks will no longer ignore attributes that are unknown
but rather assume the new CI schema behavior of injecting them into the
generated CI configuration. This change is required to secure
authentication in Spack CI.
