Libunwind already builds a shared library. The +pic variant adds the
compiler pic flag to the static archive so that it can be linked into
another shared library.
Eospac's build breaks on gcc@10: due to dependence on -fcommon behavior
and gnu changing to -fno-common. Added conditional argument to support
bleeding edge compilers
This PR adds the r-dss package and the r-bsseq package, also new, as a
dependency. This includes the latest versions, which required updates to
the following dependencies:
- r-biocgenerics
- r-iranges
- r-s4vectors
- r-summarizedexperiment
Older versions of r-dss and r-bsseq are included as well to ensure
compatibility with older versions of the above dependencies.
* WHIZARD: add versions 2.8.4 and 2.8.3
* New package: LCIO
* WHIZARD: add optional dependency on LCIO
* WHIZARD: add optional dependency on Openloops
* WHIZARD: allow building with either hepmc or hepmc3 dependencies
* Openloops: set process_lib_dir in configure
* Openloops: fix reference to variant
astropy 3.2.1 fails to build with python 3.8.3 with
errors similar to this:
astropy/stats/_stats.c:318:11: error: too many arguments to function 'PyCode_New'
PyCode_New(a, 0, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos)
These are files that are generated by cython, but are included in the
tarball. Since there's apparently been an API change to PyCode_New, they will
need to be re-cythonized to compile correctly.
* [M4] Add missing compiler flag on Cray Compiler
The new version of the Cray Compiler are based on Clang, which means we
need to add the same LDFLAG as other clang environments.
* Add new versions of texlive and poppler.
* Add new versions of harfbuzz which also relocated source location to github.
* Update var/spack/repos/builtin/packages/harfbuzz/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Restore deleted url line in harfbuzz.
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Addition of Chainmap to satisfy Maestro dependency.
* Additional versions and dependencies for Maestro.
* Updated URL to point to pypi.
* Updates to chainmap hashes.
* Updates to pull version from PyPi.
* Corrections to flake8 errors.
* Stricter restrictions on Python versioning.
Maestro actually supports Python 3.5 and later.
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Only install chainmap for Python2 versions.
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Removal of setuptools python cond.
* Removal of version constaints on setuptools.
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
GCC 4.8.5 on rhel6:
```
utext.cpp:572:5: error: 'max_align_t' in namespace 'std' does not name a
type
std::max_align_t extension;
^
utext.cpp: In function 'UText* utext_setup_67(UText*, int32_t,
UErrorCode*)':
utext.cpp:587:73: error: 'max_align_t' is not a member of 'std'
spaceRequired = sizeof(ExtendedUText) + extraSpace -
sizeof(std::max_align_t);
^
utext.cpp:587:73: note: suggested alternative:
In file included from
/projects/spack/opt/spack/gcc-4.4.7/gcc/6ln2t7b/include/c++/4.8.5/cstddef:42:0,
from utext.cpp:19:
/projects/spack/opt/spack/gcc-4.4.7/gcc/6ln2t7b/lib/gcc/x86_64-unknown-linux-gnu/4.8.5/include/stddef.h:
425:3: note: 'max_align_t'
} max_align_t;
^
utext.cpp:598:57: error: 'struct ExtendedUText' has no member named
'extension'
ut->pExtra = &((ExtendedUText *)ut)->extension;
^
g++ ... loadednormalizer2impl.cpp
g++ ... chariter.cpp
```
* Initial version of PySCF.
* Add master branch to xcfun library
* PySCF only compatible with specific commit of xcfun library
* Update var/spack/repos/builtin/packages/py-pyscf/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Update var/spack/repos/builtin/packages/py-pyscf/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Revert "PySCF only compatible with specific commit of xcfun library"
This reverts commit 8296005400fbe76d0c8339b7ca06e71a801f0a22.
* Revert "Add master branch to xcfun library"
This reverts commit f2b69989316a6bece6530d5d63f1d120ab4c14a8.
* Issues conflict for xcfun library version rather than relying on a random commit.
* Add version xcfun 2.0.0a2 which is needed by PySCF.
* Remove xcfun conflict and express dependency more explictly. Add comment as to why this is necessary.
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* wannier90: add versions 3.0.0 and 3.1.0 and 'shared variant'
Added versions 3.0.0 and 3.1.0
Added shared variant
Added url_for_version function as versions less than 3 are from the
wannier.org site and versions 3 and up are from github.com
Added the MPI libraries to the list of libs substituted into the make.sys file
in place of @LIBS
Made it possible to build a shared object version of the library for versions
< 3 by filtering the src/Makefile.2 file (based off of the patch from a src rpm
from RHEL for version 2.0.1)
Create a modules directory in the install prefix root directory and copy the
Fortran .mod files there.
Set the MPIFC variable to the Spack Fortran MPI compiler wrapper.
* abinit: added 'wannier90' variant which enables building abinit with wannier90
Added wannier90 variant
Made abinit depend on the shared object ('shared') variant of
wannier90 if the wannier90 variant is selected
Add configure args for wannier90 libs, includes, and binaries and to
set MPIFC
set the dft-flavor to wannier90 when wannier90 is enabled and only
set the dft flavor to 'atompaw+libxc' if wannier90 is not selected
* Update var/spack/repos/builtin/packages/abinit/package.py
Co-authored-by: Greg Becker <becker33@llnl.gov>
* Update var/spack/repos/builtin/packages/wannier90/package.py
Co-authored-by: Greg Becker <becker33@llnl.gov>
* Update var/spack/repos/builtin/packages/wannier90/package.py
Co-authored-by: Greg Becker <becker33@llnl.gov>
* incorporated bbecker's suggestion for making the strings less ugly!
* incorporated bbecker's suggestion to fix the logic for picking which
"DFT flavor" configure argument.
If the wannier variant is enabled, it passes --with-dft-flavor=wannier90
to configure, otherwise it passes --with-dft-flavor=atompaw+libxc to configure
* Changed to using plain strings
* Fixed version tests
* incorporated @adamjstewart's fix for testing if the major version is > 2
* incorporated @adamjstewart's fix to check if mpi is enabled and
only set the MPIFC variable if it is.
* Update var/spack/repos/builtin/packages/wannier90/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Only set MPIFC if '+mpi' is set
* incorporated fixes from @adamjstewart including:
- using the string=True argument to filter_file (and removed the unneeded
escapes)
- changing the url to the github location
- fixing the version checks
- building a libwannier.dylib on darwin
* incorporated fixes suggested by @adamjstewart including:
- using the string=True argument to filter_file and cleaned up the escapes
- only pass the MPIFC argument to configure when '+mpi' is set
- chaned the url to the github site for Wannier090
- fixed the version checks
- build a 'libwannier.dylib' file when building the shared variant on darwin
* Update var/spack/repos/builtin/packages/wannier90/package.py
Co-authored-by: Greg Becker <becker33@llnl.gov>
* moved a configure argument from it's own '+mpi' check to under the lower one
* Update var/spack/repos/builtin/packages/wannier90/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Cleaned up syntax as suggested by @adamjstewart
It looks *so much better* now! Thanks!
* removed unneeded import of 'find' from 'llnl.util.filesystem' package
as suggested by @adamjstewart
* Update var/spack/repos/builtin/packages/wannier90/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* incorporated changes from @adamjstewart
changed check to "if '@:2 +shared' in spec:" instead of a nested check of '@:2' and
'+shared'
removed unneeded joins used in filter_file and spliced the list of objs directly into
the filter_file call
used the dso_suffix instead of testing for darwin to determine the name of the
shared library
* removed whitespace from blank line
* fixed bug with '../../wannier90.x: .*' not being treated as a regexp. Thanks Adam!
* fixed missing whitespace when modifying Makefile.2
Co-authored-by: Greg Becker <becker33@llnl.gov>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* New package: OpenLoops
* install() for openloops
* Working OpenLoops recipe
* Flake-8
* Only copy collection file if required; add clarification to num_jobs
* Add __future__ import just in case
* Fix missing space
* Remove __future__ import
* Changes from review, pt. 1
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Replace print() with write()
* Flake-8
Co-authored-by: iarspider <iarpsider@gmail.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* vasp: New package.
* Remove unneeded `#noqa`
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Removed a completely needless tty.debug()
* Add compiler conflicts() and minute fixes
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* add apcomp package
* add maintainers
* fake8
* Update var/spack/repos/builtin/packages/apcomp/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* review suggestions
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* icu4c: Add new versions for older releases.
The old URLs for versions 60.1, 58.2 and 57.1 do not work anymore so add the versions available on Github.
The old versions are kept for reference (cf. #15896).
* icu4c: Add versions 66.1 and 67.1.
* icu4c: Fix compilation of versions 58 and 59 with recent glibc.
This matches the current latest version of protobuf in Spack.
Generally the version of py-protobuf and protobuf should match,
but this constraint is not currently recorded in py-protobuf.
* gdk-pixbuf: Add new stable versions.
* gdk-pixbuf: Add a missing dependency with libx11.
Also add a variant disabled by default to make it optional since it is considered deprecated
(cf. 3362e94c25).
* Added new versions to magics and began to set not-so-optional netcdf dependency
* Added enforced netcdf dependency
* Fix also works for version 4.1.0
* llvm-flang Only build offload code if cuda enabled
The current version executes `cmake(*args)` always as part of the post install. If device offload is not part of the build, this results in referencing `args` without it being set and the error:
```
==> Error: UnboundLocalError: local variable 'args' referenced before assignment
```
Looking at prevoous version of `llvm-package.py` this whole routine appears to be only required for offload, some indent `cmake/make/install` to be under the `if`.
* Update package.py
Add comment
* bbcp: Update the URLs to use HTTPS.
The HTTP URLs do not work anymore.
* bbcp: Add missing libnsl dependency.
* bbcp: Rename the git-based version to match the branch name.
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* py-pysam: add LDFLAGS to curl
* Update var/spack/repos/builtin/packages/py-pysam/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* New package: vbfnlo
* Add new package: vbfnlo
* Add recipe for looptools
* Add patch for looptools
* LoopTools: patch not needed (fixed by developers without changing version)
* Remove patch file as well
* Update package.py
* Update package.py
* Fix vbfnlo recipe for old version
Co-authored-by: iarspider <iarpsider@gmail.com>
* new package: ligra
* setup run environment
* tidy up
* Update var/spack/repos/builtin/packages/ligra/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Update var/spack/repos/builtin/packages/ligra/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Update var/spack/repos/builtin/packages/ligra/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* flake8
Co-authored-by: Sinan81 <sbulut@3vgeomatics.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
`gcc` 9 and above have more warnings that break the `flatcc` build by default, because `-Werror` is enabled. This loosens the build up so that we can build with more compilers in Spack.
- [x] Add `-DFLATCC_ALLOW_WERROR=OFF` to `flatcc` CMake arguments
Co-authored-by: Frank Willmore <willmore@anl.gov>
* Buildcache:
* Try mocking an install of quux, corge and garply using prebuilt binaries
* Put patchelf install after ccache restore
* Add script to install patchelf from source so it can be used on Ubuntu:Trusty which does not have a patchelf pat package. The script will skip building on macOS
* Remove mirror at end of bindist test
* Add patchelf to Ubuntu build env
* Revert mock patchelf package to allow other tests to run.
* Remove depends_on('patchelf', type='build') relying instead on
* Test fixture to ensure patchelf is available.
* Call g++ command to build libraries directly during test build
* Flake8
* Install patchelf in before_install stage using apt unless on Trusty where a build is done.
* Add some symbolic links between packages
* Flake8
* Flake8:
* Update mock packages to write their own source files
* Create the stage because spec search does not create it any longer
* updates after change of list command arguments
* cleanup after merge
* flake8
This PR creates a new spack package for
mumax: GPU accelerated micromagnetic simulator.
This uses the current beta version because
- it is somewhat dated, ~2018
- it is the only one that supports recent GPU kernels
* fix binutils deptype for gcc
binutils needs to be a run dependency of gcc
* Fix gcc+binutils build on RHEL7+
static-libstdc++ is not available with system gcc.
Anyway, as it is for bootstraping, we do not really care depending on
a shared libstdc++.
Co-authored-by: Michael Kuhn <michael@ikkoku.de>
* Add Rivet and YODA
* Add patches
* Flake-8
* Set level for Rivet patches
* Syntax fix
* Fix dependencies of Rivet
* Update var/spack/repos/builtin/packages/rivet/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
