Commit graph

7035 commits

Author SHA1 Message Date
Adam J. Stewart
94c1651bce Add latest version of PGI compilers (#4186)
* Add latest version of PGI compilers

* Prepend, don't overwrite
2017-05-10 08:16:39 -05:00
Stephen McDowell
61ad369186 py-flask version updates, remote switch (#4166)
* version updates, remote switch

* trim versions to original and most recent

* proper url discovered and tested
2017-05-10 08:15:47 -05:00
Stephen McDowell
c0ceece9cc enable cuda support for suite-sparse (#4163)
* enable cuda support for suite-sparse

* do not use spec.satisfies

* cuda restructure, give clearer comment of why

* str format compatibility

* flake8 checks
2017-05-10 08:13:14 -05:00
Adam J. Stewart
b5eb298f3e Add a new package for ExtUtils::MakeMaker (#4179) 2017-05-09 18:52:08 -05:00
Adam J. Stewart
36db5ba9d8 Fix newline character in GCC package (#4181)
* Fix newline character in GCC package

* Remove the newline completely
2017-05-09 18:51:40 -05:00
Mark C. Miller
64fb2f22b4 Adding FASTMath uber package and missing FASTMath packages (#4120)
* adding 0.5.1 and variant for uint8 bit stream word type

* Revisions as per davydden

* fixing style (flake8) issues

* - switched to derive from MakefilePackage
- fixed typo in variant check
- Confirmed installs correctly with bswtuint8 variant

* added build method; changed zfp_incdir to incdir

* * Adding uber fastmath package to support 'spack install fastmath'
* Adding dims variant boxlib to control compile-time spatial dimension count
* Explicitly disabling many parts of moab to get lib to build. Don't need tools yet.
* Add logic to spack/setup-env to not refer to $SYS_TYPE if its not defined.

* adding mesquite package

* * Added Chombo (still working on Fortran name mangling)
* Made mesquite depend on mpi
* Fixed use of boxlib's dims numerical variant

* adding PUMI

* flake8 compliance

* adding phasta

* fixing flake8 issues

* undue $SYS_TYPE protection change

* fixing install step for fastmath uber package; resolve issues requested by adamjstewart in PR

* revisions as per adamjstewart

* re-enabling trilinos and phasta dependencies

* all changes requested modulu values= and assert statement

* fixing cmake_args usage in pumi; fixing lib installs for chombo

* first pass at numerical variant

* fixing dims variant as per @adamjstewart

* fixing func/var name collision

* fixing means of disabling -Werror

* fix name collision for cmake_args var/func

* fixing chombo homepage/url; make FASTMath use chombo#3.2; remove extraneous comment about boxlib dim

* remove dummy fastmath package; switch to @BarrySmith soln for install of dummy bundle

* fix flake8 import os issue

* remove extraneous comment

* adding url for fastmath scidac site

* final fixes as per @adamjstewart

* adding 1 dims option for boxlib

* switching make(all) to gmake(all)
2017-05-09 18:26:57 -05:00
Adam J. Stewart
a5fd658986 Add latest versions of Intel compiler (#4184) 2017-05-09 18:15:14 -05:00
George Hartzell
ba32f0d3a2 Make openmpi package defn more robust (#4183)
Make openmpi handle bad ibv_devices return statuses without bailing out completely.

See #4162 for background.
2017-05-09 18:00:08 -05:00
Erik Schnetter
692a100caa ncurses: Always build tools (#4174)
Otherwise, the install can fail if the system-provided `tic` binary is too old.
2017-05-09 17:59:46 -05:00
Erik Schnetter
caabcdc8b4 simulationio: Declare dependency on the HDF5 C++ bindings (#4177) 2017-05-09 17:59:21 -05:00
Erik Schnetter
44440d023d qthreads: Convert to AutoTools package (#4176) 2017-05-09 17:58:44 -05:00
Erik Schnetter
0e02f99323 funhpc: Update to version 1.3 (#4170)
Also use a Spack-provided GoogleTest.
2017-05-09 16:19:06 -05:00
Erik Schnetter
68034e4d42 gdbm: Declare readline dependency (#4171) 2017-05-09 16:18:17 -05:00
Gregory Lee
cbcf0f4674 Merge pull request #4165 from epfl-scitas/packages/cp2k_intel_stack_17
cp2k: fixed compilation issues for intel stack
2017-05-09 13:44:53 -07:00
Adam J. Stewart
e8f493ee7b Travis version of pip is too old (#4180)
* Travis version of pip is too old

* Also need to upgrade setuptools
2017-05-09 13:59:59 -05:00
Massimiliano Culpo
306f158c73 cp2k: fixed compilation issues for intel stack
Added DFLAGS to the `make.inc` file being written.
These macros are also added to the language specific variables
like CFLAGS, CXXFLAGS and FCFLAGS. Changed `spec.satisfies('foo')`
with `'foo' in spec` in `intel-mkl`, see #4135. Added a basic
build interface to `intel-mpi`.
2017-05-09 18:46:42 +02:00
Adam J. Stewart
4b866c6395 Add GCC 7 (#4144)
* Add GCC 7
* Allow users to build subset of GCC compilers with multi-value variant.
* Add comment explaining what 'all' actually means
* More specific golang support
* Only require Zip when building Java
* Comment out provide directives that don't currently work
* Add Ada support
* Use conflicts directive
* Fix joining of languages
* Need special flag to build jit
* Explicitly declare GNAT download extension
* Import tty, update lib64 to lib
* BRIG and Go are not supported on macOS
* Simplify formatting and imports
* JIT patch required for newer versions as well
2017-05-08 13:28:28 -07:00
Massimiliano Culpo
3efa9bd296 spec_syntax: added xfailing tests for cases in #4144 (#4151)
It seems that parse_anonymous_spec may fail if more than one part
(variant, version range, etc.) is given to the function. Added tests to
code against to fix the problem in #4144.
2017-05-08 13:24:37 -07:00
Todd Gamblin
ff3b5d88e4 rework spack help (#3033)
- Full help is now only generated lazily, when needed.
  - Executing specific commands doesn't require loading all of them.
  - All commands are only loaded if we need them for help.

- There is now short and long help:
  - short help (spack help) shows only basic spack options
  - long help (spack help -a) shows all spack options
  - Both divide help on commands into high-level sections

- Commands now specify attributes from which help is auto-generated:
  - description: used in help to describe the command.
  - section: help section
  - level: short or long

- Clean up command descriptions

- Add a `spack docs` command to open full documentation
  in the browser.

- move `spack doc` command to `spack pydoc` for clarity

- Add a `spack --spec` command to show documentation on 
  the spec syntax.
2017-05-08 13:18:29 -07:00
Denis Davydov
7923579a42 qt: add 5.8.0 which builds on Sierra with clang 8.1.0 (#4109)
* qt: add 5.8.0 which builds on Sierra with clang 8.1.0

* enable parallel build, add freetype dependency

* minor

* minor
2017-05-08 14:29:08 -05:00
scheibelp
16aa8faf45 Merge pull request #4145 from scheibelp/features/temporary-no-python-for-libxcb
Remove python dependency for libxcb and xcbproto
2017-05-08 11:22:27 -07:00
Massimiliano Culpo
85b0ebe836 BarrierTimeoutError must derive from Exception (#4157)
Seen in https://travis-ci.org/LLNL/spack/builds/229484526, very likely
due to a problem in the Travis builder.
2017-05-07 22:06:39 -07:00
Adam J. Stewart
cf93f49462 Fix PGI compiler detection on PowerPC (#4150) 2017-05-07 22:04:52 -07:00
Massimiliano Culpo
4e44d39f1a Spec.__init__: removed dead code (#4146)
The conditionals are repeated in the statement before _add_dependencies
2017-05-07 21:53:02 -07:00
Luigi Calori
b65daa93be Paramiko python extensions + his deps and other related extensions (#4158)
* adding paramiko and missing dependencies, setup to work with #2548

* adding other deps for paramiko

* fix flake8 errors

* removed spurious add

* address suggestion for proper dependencies

* fix cryptography deps

* remove FIXME comments and commented depends lines
2017-05-07 19:00:25 -05:00
nvarini
bb1a8efaca Added scala package (#67) 2017-05-07 13:05:29 +02:00
Adam J. Stewart
12633b06e4 Add Read the Docs badge to README (#4153) 2017-05-06 14:24:45 -05:00
Adam J. Stewart
42b09640f0 gmp: switch to download directly from GNU (#4152) 2017-05-06 14:24:19 -05:00
Adam J. Stewart
4f439f8e82 mpfr: switch to more reliable URL (#4139)
* Add list_url to mpfr

* Switch to download directly from GNU

* http -> https
2017-05-06 14:22:32 -05:00
Barry Britt
c0a52cc59e Updating bamtools to include a dependency for zlib. (#4031)
* Updating bamtools to include a dependency for zlib.

In a standard compile, bamtools will fail if zlib headers are not installed on the target machine. In order to maintain compatibility with all systems -- and since zlib is included already as a dependency for cmake -- this patch adds zlib as a link dependency for the bamtools package.

* Modified cmake rpath include.

Bamtools has a non-standard library location, so we need to append $prefix/lib/bamtools to the rpath. Not sure there's a better way to do this...

* Fixing syntax error in package.py

Fixed a non-terminated parenthesis on line 46.

* Updated bamtools to be a CMakePackage

Removed extraneous code, and altered the package to extend cmake_args
including the non-standard library location.

* UpRemoving cmake dependency and removing blank line from end of file

* Updates to cmake_args.

Removed the duplicate definition of std_cmake_args in favor of simply overriding the CMAKE_INSTALL_RPATH variable that is provided. This should allow the package to be linked correctly to itself.
2017-05-06 12:05:12 -05:00
Matthew Scott Krafczyk
741e4df233 Update zlib to work with other compilers (#4088)
* Fix -include issue with intel and pgi in zlib

MERGE CANDIDATE

* Patch zlib to compiler with the cray compiler suite.
2017-05-06 12:02:32 -05:00
Adam J. Stewart
73896e9481 Remind developers to update tab completion script (#4148) 2017-05-05 18:52:28 -05:00
George Hartzell
f55eddb9bd Add info for perl@5.22.1 (#4147)
What the user wants, the user gets....
2017-05-05 18:00:23 -05:00
Adam J. Stewart
be991a6efa Add latest version of curl (#4140) 2017-05-05 16:21:37 -05:00
Adam J. Stewart
6e23c31ad1 Python 3 doesn't have iteritems, use items (#4143) 2017-05-05 16:21:15 -05:00
Adam J. Stewart
c3af901ac6 Add latest version of Lmod (#4141) 2017-05-05 23:06:07 +02:00
Peter Josef Scheibel
19511a78b8 Remove python dependency for libxcb and xcbproto
python+tk will not build because it depends (indirectly) on python~tk
via libxcb. There are efforts to allow multiple instances of a package
to concretize together but they are ongoing so in the meantime this
comments out the dependencies and adds TODOs
2017-05-05 13:06:49 -07:00
Adam J. Stewart
9b49dfdc2a Fix typos in Basic Installation Tutorial (#4127) 2017-05-05 13:05:56 -05:00
George Hartzell
f532b4c90b Add info for jdk@8u73 (#4137)
* Fix ordering of versions (proper!)

* Add url/digest for jdk@8u73
2017-05-05 13:05:27 -05:00
Todd Gamblin
665e328566 Add OpenCV 3.2.0 checksum (#4138) 2017-05-05 13:05:05 -05:00
George Hartzell
0042b5e856 Add info for r@3.3.3 (#4128) 2017-05-05 13:04:46 -05:00
Massimiliano Culpo
85b4b15d9a SV variants are evaluated correctly in "when=" (#4118)
* SV variants are evaluated correctly in `when=` statements fixes #4113

The problem here was tricky:
```python
spec.satisfies(other)
```
changes already the MV variants in others into SV variants (where
necessary) if spec is concrete. If it is not concrete it does
nothing because we may be acting at a pure syntactical level.

When evaluating a `when=` keyword spec is for sure not concrete
as it is in the middle of the concretization process. In this case we
have to trigger manually the substitution in other to not end up
comparing a MV variant "foo=bar" to a SV variant "foo=bar" and having
False in return. Which is wrong.

* sv variants: improved error message for typos in "when=" statements
2017-05-04 11:01:02 -07:00
Massimiliano Culpo
6a9052bd4d variants: fixed packages reported by @adamjstewart in #4098 (#4105) 2017-05-04 10:58:58 -07:00
scheibelp
0cf406d7b6 Merge pull request #4121 from davydden/fix_transitive_build_dep_2
add transitive run dependencies of direct build dependencies
2017-05-04 10:32:50 -07:00
Gregory Lee
26a9793148 patch sqlite to work around macro definition (#4117) 2017-05-04 06:43:27 -05:00
Denis Davydov
7592971cb1 add transitive run dependencies of direct build dependencies 2017-05-04 08:43:06 +02:00
scheibelp
bee105fbb9 Merge pull request #4069 from davydden/fix_transitive_build_dep
only add direct build-only dependencies to PATH
2017-05-03 18:41:26 -07:00
Matthew Scott Krafczyk
18db25bb02 Update py-beautifulsoup4 (#4089)
* Update py-beautifulsoup4

* Change beautifulsoup4 url to pypi.io url.
2017-05-03 14:17:04 -05:00
Matthew Scott Krafczyk
6e14b97f84 Update cray compiler options (#4086) 2017-05-03 12:05:15 -05:00
Matthew Scott Krafczyk
07e1597a15 building wget depends on perl > 5.12.0 (#4087)
* building wget depends on perl > 5.12.0

* Remove extra parenthesis
2017-05-03 10:29:55 -05:00