* py-htseq: add 0.12.3, switching over to new GitHub repo
* py-htseq: add 0.12.3, switching over to new GitHub repo
Style fixes
* py-htseq: add 2.0.3, switch to PyPI
* py-htseq: add 2.0.3, switch to PyPI
* Update package.py
* Update var/spack/repos/builtin/packages/py-htseq/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Removing SWIG
---------
Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* llvm: replace +omp_as_runtime with omp=runtime
* llvm: fetch 'libomp-libflags-as-list.patch' from upstream repo
* llvm: replace 'llvm14-hwloc-ompd.patch' with the official fix from upstream repo
* llvm: fix-up for the black reformatting
* llvm: fetch 'constexpr_longdouble.patch' from upstream repo
* llvm: optionally build libcxx as a runtime
* llvm: fetch 'llvm5-sanitizer-ustat.patch' from upstream repo
* llvm: update 'sanitizer-ipc_perm_mode.patch'
* llvm: refactor compiler conflicts when libcxx=project
* llvm: fetch 'llvm_python_path.patch' from upstream repo
* llvm: update comments and condition for 'xray_buffer_queue-cstddef.patch'
* llvm: optionally build compiler-rt as a runtime
* llvm: fetch 'lldb_external_ncurses-10.patch' from upstream repo
* llvm: fetch 'llvm_py37.patch' from upstream repo
* llvm: rename variant 'internal_unwind' to 'libunwind'
* llvm: optionally build libunwind as a runtime
* llvm: extend the list of maintainers
* llvm: allow for explicit '~clang~flang~libomptarget~lldb~omp_debug~z3'
* llvm: fetch 'llvm5-lld-ELF-Symbols.patch' from FreeBSD port repo
* llvm: fetch most of 'missing-includes.patch' from upstream repo and reuse 'llvm-gcc11.patch'
* llvm: regroup patches for missing include directives and drop compiler constraints for them
* llvm: fetch 'llvm-gcc11.patch' from upstream repo
* llvm: fetch 'no_cyclades.patch' from upstream repo
* llvm: update comments and condition for 'no_cyclades9.patch'
* llvm: rename variant 'omp' to 'openmp'
* llvm: constrain and rename variant 'omp_tsan' to 'libomp_tsan'
* llvm: rename variant 'omp_debug' to 'libomptarget_debug'
* llvm: do not apply same patch twice
* llvm: constrain and document the '*-thread.patch' patches
* llvm: document the '~lld+libomptarget' conflict
* llvm: update comments for the 'D133513.diff' patch
* py-future: add 0.18.3
* Update var/spack/repos/builtin/packages/py-future/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
---------
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Adding libpsm3 package
* Make changes suggested by flake8
* Make one more flake8-suggested change, blank line after 'import os'
* Change to standard header to pass flake8 tests
* Update doc string, remove unnecessary comments
* Reviewer-recommende changes
* Alphabetize variants
* Use helper functions
* Change quotes to pass spack style check
Co-authored-by: Mikael Simberg <mikael.simberg@iki.fi>
- Add pkgconfig dependency from 1.23.0 onward.
- Add conflict of old versions with new gcc due to missing includes.
- Deprecate uneven minor versions because they are not regarded as stable.
- Add maintainer
* [xsdk-examples] Initial commit for v0.4.0
* [xsdk-examples] v0.4.0 depends on xsdk@0.8.0
* add in missing xsdk dependencies
* [xsdk-examples] remove repeated 'depends_on' directive
* [xsdk-examples] simplify and extend a bit the package
[mfem] process more optional dependencies of HiOp
[strumpack, superlu-dist] add a workaround for an issue on Mac
* [mfem] fix the handling of the hiop dependency
* [@spackbot] updating style on behalf of v-dobrev
* [xsdk-examples] enable 'heffte' and 'tasmanian' if enabled in 'xsdk'
* [xsdk-examples] Add PUMI dependency
* [xsdk-examples] Add preCICE dependency
* [xsdk-examples] add +rocm
* heffte: add in a backport fix for building xsdk-examples with cuda
* [xsdk] Remove the explicit requirement for deal.II to be built +hdf5
* ENABLE_ROCM -> ENABLE_HIP
* [hiop] Workaround for CMake not finding Cray's BLAS (libsci)
[xsdk-examples] Set CUDA/HIP architectures; sync cuda/rocm variants with xsdk
* [@spackbot] updating style on behalf of v-dobrev
* [exago] Workaround for CMake not finding Cray's LAPACK/BLAS, libsci
[mfem] Tweaks for running tests under Flux and PBS
* [slate] Pass CUDA/HIP architectures to CMake
* [heffte] For newer CMake versions, set CMAKE_CUDA_ARCHITECTURES
* [hypre] Patch v2.26.0 to fix sequential compilation in 'src/seq_mv'
* [xsdk-examples] Some tweaks in dependencies and compilers used
* [xsdk] Make the 'trilinos' variant sticky
[xsdk-examples] Tweak dependencies
* [slate] Fix copy-paste error
* [xsdk-examples] Workaround for CMakePackage not having the legacy
property 'build_directory'
* [xsdk-examples] Replace the testing branch used temporarily for v0.4.0 with
the official release
---------
Co-authored-by: Satish Balay <balay@mcs.anl.gov>
* Add CMake options for building with CUDA/HIP support to
CachedCMakePackages (intended to reduce duplication across packages
building with +hip/+cuda and using CachedCMakePackage)
* Define generic variables like CMAKE_PREFIX_PATH for
CachedCMakePackages (so that a user may invoke "cmake" themselves
without needing to setthem on the command line).
* Make `lbann` a CachedCMakePackage.
Co-authored-by: Chris White <white238@llnl.gov>
fa7719a changed syntax for specifying exact versions, which are
required for some compiler specs (including those read as part
of parsing a Cray manifest). This fixes that and also makes a
couple other improvements to manifest parsing.
* Instantiate compiler specs with exact versions (fixes#37893)
* fix slingshot network detection (CPE 22.10+ has libcxi.so
in /usr/lib64)
* "spack external find": add arg to ignore default dir for cray
manifests
