Commit graph

24713 commits

Author SHA1 Message Date
G-Ragghianti
500e05ee50
SLATE package: tests (#28723)
This improves the stand-alone tests for slate by providing most
of the dependencies to the test framework and enabling stand-alone
tests on all versions except the oldest.
2022-02-08 10:30:57 -08:00
Toyohisa Kameyama
c1b51d6e99
fujitsu frontistr: New package (#28514)
* fujitsu-frontistr: new package.

* Add frontistr@5.3
Add fujitsu-frontistr static variant
style fix.

* update copyrigght year.
2022-02-07 18:42:26 -08:00
Michael Bentley
e97bffc3e8
flit: remove dependency from development branch version (#28789) 2022-02-07 18:35:18 -07:00
Adam J. Stewart
457fe842f0
py-scipy: add v1.8.0 (#28798) 2022-02-07 16:35:32 -07:00
Adam J. Stewart
1809a122ef
py-pymumps: remove install_options (#28452) 2022-02-07 14:27:17 -08:00
Axel Huebl
8430e28a52
AMReX: +tiny_profile (#28785)
* AMReX: +tiny_profile

The tiny profiler options in AMReX are by default off but needed
by WarpX. Adds a new variant to control it.

* Add Erik Palmer as Co-Maintainer

... so he receives pings on updates of the package for review.
2022-02-07 15:15:25 -07:00
Tim Haines
c791ddc742
libiberty: add versions from v2.34.1 to v2.37 (#28792) 2022-02-07 06:12:08 -07:00
Harmen Stoppels
9a194dd0a9
Bump ca-certificates-mozilla (#28803) 2022-02-07 06:11:50 -07:00
VladimirUspenskii
0ce71b38b0
Add oneAPI packages from the 2022.1.2 release (#28750)
Co-authored-by: Robert Cohn <rscohn2@gmail.com>
Co-authored-by: Robert Cohn <robert.s.cohn@intel.com>
2022-02-07 14:01:50 +01:00
Stephen Sachs
14902a5821
intel-mkl: BLACS with intel-oneapi-mpi (#28476)
Identify the correct BLACS libaries when `intel-oneapi-mpi` is used.
2022-02-07 13:26:20 +01:00
Seth R. Johnson
efc35c2ffc
gcc: fix build on apple-clang@13 (#28801) 2022-02-07 13:04:37 +01:00
Jordan Galby
37ae4c0fdb
Support config variables in config.yaml extensions paths (#17772) 2022-02-07 11:40:52 +01:00
Adam J. Stewart
f3139555b1
py-torch: update dep constraints (#28743)
The version of the ONNX submodule was updated between the PyTorch
1.9 and 1.10 releases, which fixed builds with newer protobuf but
broke builds with older protobuf.

Also this adds minimum version reqs for numpy/typing-extensions
(which were not present before).
2022-02-06 21:33:12 -08:00
Harmen Stoppels
aa5e1a0723
git: new versions (#28777) 2022-02-06 10:58:17 -08:00
Seth R. Johnson
6e36c71d68
Fix GCC 8 build on macOS bigsur %apple-clang@12.0.5 (#28795)
* gcc: revise patch range on darwin

* gcc: add conflict to work around bootstrap failure

closes #23296 . See https://gcc.gnu.org/bugzilla/show_bug.cgi?id=100340
.

```
Comparing stages 2 and 3
Bootstrap comparison failure!
gcc/tree-ssa-operands.o differs
gcc/tree-ssanames.o differs
gcc/ipa-inline.o differs
gcc/tree-ssa-pre.o differs
gcc/gimple-loop-interchange.o differs
...
```
639 total differences.

* gcc: bump conflict up to correct later version
2022-02-06 07:48:16 -05:00
Axel Huebl
d82dcd35b3
WarpX: add v22.02 (#28742) 2022-02-04 23:53:51 -07:00
Toyohisa Kameyama
797c061743
openfdtd: add version 2.6.3, 2.7.1, 2.7.3 and support Fujitsu Compiler. (#28472) 2022-02-04 11:54:39 -08:00
Toyohisa Kameyama
c29e6dbd20
wrf: Add New version, support fujitsu compiler, refactor and bug fix. (#28567)
* wrf: Add version 4.3, support fujitsu compioler, output build log, and fix to build diffwrf.
2022-02-04 11:53:59 -08:00
Toyohisa Kameyama
cccd1ce376
atompaw: use autotoolsPackage and support Fujitsu compiler. (#28471)
* atompaw: use autotoolsPackage and support Fujitsu compiler.
2022-02-04 11:50:55 -08:00
Harmen Stoppels
73077f3a67
database: fix reindex with uninstalled deps (#28764)
* Fix reindex with uninstalled deps

When a prefix of a dep is removed, and the db is reindexed, it is added
through the dependent, but until now it incorrectly listed the spec as
'installed'.

There was also some questionable behavior in the db when the same spec
was added multiple times, it would always be marked installed.

* Always reserve path

* Only add installed spec's prefixes to install prefixes set

* Improve warning, and ensure ensure only ensures

* test: reindex with every file system remnant removed except for the old index; it should give a database with nothing installed, including records with installed==False,external==False,ref_count==0,explicit=True, and these should be removable from the database
2022-02-04 19:31:39 +00:00
Massimiliano Culpo
5881a03408
Use Spec.constrain to construct spec lists for stacks (#28783)
* stacks: add regression tests for matrix expansion

* Use constrain semantics to construct spec lists for stacks

* Fix semantics for constraining an anonymous spec. Add tests
2022-02-04 19:17:23 +00:00
Axel Huebl
d668dea97d
WarpX/HiPACE: noacc PSATD also needs FFTW (#28756)
Forgot to add that `compute=noacc` also needs FFTW3 for PSATD builds.
2022-02-04 10:59:47 -08:00
Valentin Volkl
45a285a751
py-kubernetes: add new versions up to v21.7.0 (#28687)
* py-kubernetes: add new versions up to v21.7.0

* py-kubernetes: update python dependency
2022-02-04 11:25:10 -06:00
Marko Kabic
7af48f4570
Adding new package: COSTA (#28727) 2022-02-04 10:02:32 -07:00
Glenn Johnson
d0019d7049
cntk: fix build and add comments (#28676) 2022-02-04 10:56:21 -06:00
Adam J. Stewart
caa1a5cec7
py-mpi4py: fix install_options (#28759) 2022-02-04 11:22:11 +01:00
Axel Huebl
172ec0e3a1
py-warpx: needs no py-cmake (#28761)
Since in Spack we pull binaries out of the `warpx` package, we don't
need `py-cmake` to build `py-warpx`.
Generally, `py-cmake` in `pyproject.toml` is just a mean for us to
tell `pip` to make a `cmake` CLI tool available.
2022-02-04 11:21:32 +01:00
eugeneswalker
4c04a0c0b7
e4s ci: uncomment variorum following pr #28754 (#28763) 2022-02-04 11:15:35 +01:00
Adam J. Stewart
9ca4c10b34
py-numpy: add v1.22.2 (#28771) 2022-02-04 11:11:41 +01:00
Tim Haines
fda89b3b4c
flit: add version for development branch (#28773) 2022-02-04 11:10:11 +01:00
Tim Haines
1ba6e27830
fpchecker: add version for master branch (#28774) 2022-02-04 11:09:22 +01:00
Tim Haines
9c686a12c1
pruners-ninja: Add version for master branch (#28765) 2022-02-03 14:59:42 -08:00
Weiqun Zhang
c7def4121a
amrex: add v22.02 (#28757) 2022-02-03 14:37:52 -08:00
Pieter Ghysels
bdf37db9e4
STRUMPACK new versions 6.3.0, 6.2.1, 6.2.0 (#28762)
* Add new versions for STRUMPACK, newer ButterflyPACK dependency

* small fix
2022-02-03 12:42:36 -08:00
liuyangzhuan
f503b3770b
Bump butterflypack versions to v.2.1.0 (#28758)
* added package gptune with all its dependencies: adding py-autotune, pygmo, py-pyaml, py-autotune, py-gpy, py-lhsmdu, py-hpbandster, pagmo2, py-opentuner; modifying superlu-dist, py-scikit-optimize

* adding gptune package

* minor fix for macos spack test

* update patch for py-scikit-optimize; update test files for gptune

* fixing gptune package style error

* fixing unit tests

* a few changes reviewed in the PR

* improved gptune package.py with a few newly added/improved dependencies

* fixed a few style errors

* minor fix on package name py-pyro4

* fixing more style errors

* Update var/spack/repos/builtin/packages/py-scikit-optimize/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* resolved a few issues in the PR

* fixing file permissions

* a few minor changes

* style correction

* minor correction to jq package file

* Update var/spack/repos/builtin/packages/py-pyro4/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* fixing a few issues in the PR

* adding py-selectors34 required by py-pyro4

* improved the superlu-dist package

* improved the superlu-dist package

* moree changes to gptune and py-selectors34 based on the PR

* Update var/spack/repos/builtin/packages/py-selectors34/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* improved gptune package: 1. addressing comments of tldahlgren in PR 26936; 2. adding variant openmpi

* fixing style issue of gptune

* changing file mode

* improved gptune package: add variant mpispawn which depends on openmpi; add variant superlu and hypre for installing the drivers; modified hypre package file to add a gptune variant

* fixing style error

* corrected pddrive_spawn path in gptune test; enforcing gcc>7

* fixing style error

* setting environment variables when loading gptune

* removing debug print in hypre/package.py

* adding superlu-dist v7.2.0; fixing an issue with CMAKE_INSTALL_LIBDIR

* changing site_packages_dir to python_platlib

* not using python3.9 for py-gpy, which causes due to dropped support of tp_print

* more replacement of site_packages_dir

* fixing a few dependencies in gptune; added a gptune version

* adding url for gptune

* minor correction of gptune

* updating versions in butterflypack

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2022-02-03 12:42:21 -08:00
Matthieu Dorier
4a308d0d4b
[py-xonsh] added py-xonsh package (#28746)
* [py-xonsh] added py-xonsh package

* [py-xonsh] change dependency to python 3.6

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2022-02-03 14:09:10 -06:00
eugeneswalker
48b2cf54cf
variorum: needs jansson (#28754) 2022-02-03 10:45:19 -08:00
Mosè Giordano
5208fcf1ea
libblastrampoline: Add versions 4.1.0, 5.0.0, 5.0.1 (#28732) 2022-02-03 11:55:48 +01:00
Chris White
98fe047671
Sundials: update version sha, add -D to cmake option (#28720) 2022-02-03 11:48:18 +01:00
Satish Balay
95f77dacd6
petsc, py-petsc4py: add versions 3.16.4 (#28729) 2022-02-03 11:47:34 +01:00
Harmen Stoppels
4134b318ac
libgit2: add mmap variant, disabling it makes it work on filesystems that do not implement mmap (#28520) 2022-02-03 11:31:53 +01:00
liuyangzhuan
932408ac2b
gptune: add v2.1.0 (#28739) 2022-02-03 11:02:46 +01:00
kwryankrattiger
5a640f9063
conduit: convert HDF5 constaint to compile flag (#28735) 2022-02-03 10:43:39 +01:00
Greg Sjaardema
7c5db7678a
seacas: add v2022-01-27 (#28738) 2022-02-03 10:41:48 +01:00
Cyrus Harrison
cdf17fdfe5
conduit: add v0.8.2 (#28730) 2022-02-03 10:39:46 +01:00
Harmen Stoppels
2ada0fa5a2
julia: fix gfortran version detection (#28741) 2022-02-03 10:37:14 +01:00
Nils Vu
18b83c3833
Change my name (#28737) 2022-02-02 15:21:45 -08:00
Glenn Johnson
22b7d9cf67
llvm: patch for gcc-11 (#28547)
* llvm: patch for gcc-11

- added llvm-gcc11.patch
- adjusted version constraints on existing missing-includes patch.

* remove unnecessary comment

Co-authored-by: Tom Scogland <scogland1@llnl.gov>
2022-02-02 13:32:16 -07:00
Adam J. Stewart
fa8c9e4939
py-torch: avoid build issue with newer protobuf (#28721) 2022-02-02 12:23:47 -07:00
Adam J. Stewart
3576e5f3d6
Revert "Deprecate Python 2 installations" (#28411)
This reverts commit 7b76e3982f.
2022-02-02 10:12:33 -08:00