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6873 commits

Author SHA1 Message Date
Daniel Topa
c5185b18cc pmix package: add new versions (#9532) 2018-10-15 18:21:02 -07:00
Christoph Junghans
79c44ddf20
cabana: initial commit (#9444) 
* cabana: initial commit

* Cabana: added v0.1.0-rc0
 2018-10-15 15:45:56 -06:00
Jordan Moxon
9176dc29b0 ssht: new package (#9518) 2018-10-15 12:44:09 -07:00
snehring
ac68ed8fa8 redundans: replace incorrect hard-coded path for sspace-standard (#9483) 2018-10-15 12:43:02 -07:00
Matthias Diener
13c83b8ca4 cmake: add version 3.12.3 (#9528) 2018-10-15 12:40:38 -07:00
Ricardo Silva
24865fccdc sra-toolkit: new version and preserve symlinks (#9525) 
Before this, the same files were copied 3 times
 2018-10-15 11:09:00 -07:00
Jon Rood
3a2088b4f7 Build Nalu-Wind and Trilinos statically on Darwin (#9522) 
* Added conflict in Trilinos for STK when building as shared on Darwin.
* Created shared variant for Nalu and Nalu-Wind to automatically build
  Trilinos as static library on Darwin. 
* Moved ECP tags from Nalu to Nalu-Wind (the latter is the official
  ECP application).
 2018-10-15 11:03:11 -07:00
Leonhard Reichenbach
91f9a25905 py-scikit-learn: added version 0.20.0 (#9526) 2018-10-15 10:25:05 -07:00
Justin M Wozniak
ec81ec5f54 Swift/T Release 1.3 (#4641) 
New release of Swift/T along with turbine, adlbx, and exmcutils
dependencies. Update URLs for archive downloads.
 2018-10-12 17:32:27 -07:00
Andreas Baumbach
028391c0a3 py-spyder: update dependencies and fix build (#9207) 
* Remove py-setuptools dependency from py-spyder (fixes #9205)
* Add constraint on transitive qt dependency to build with webkit
  extension (required for this package)
* Update pycodestyle dependency constraints
* reordered dependencies (py-zmq, py-chardet) to confirm to the
  ordering in setup.py
 2018-10-12 10:57:32 -07:00
Leonhard Reichenbach
b0430457aa Added py-pandas@0.23.4 and py-bottleneck@1.2.1 (#9515) 2018-10-12 18:52:39 +02:00
Michael Kuhn
84f4e86358 Update scorep and friends (#9495) 
- cube: Add 4.4.2, add conflicts for ~gui, build 4.4 from cubegui tar
- cubelib: Add 4.4.2
- cubew: Add 4.4.1
- opari2: Add 2.0.4
- scorep: Add 4.1
 2018-10-12 18:51:52 +02:00
Satish Balay
e38f39e4ea
superlu-dist: fix v5.3.0 buid - its attempting to build internal blas (#9517) 
https://github.com/spack/spack/issues/9514
 2018-10-12 10:58:37 -05:00
Lars Bilke
6db1472c58 vtk: Added mpi variant (#9494) 2018-10-12 11:33:01 +02:00
Michael Kuhn
24c75d39e4 codes, dia, nest: fix pkg-config dependency (#9498) 
pkgconfig is the virtual provider, pkg-config is a specific
implementation.
 2018-10-12 09:57:44 +02:00
Michael Kuhn
cfd0b46941 at-spi2-atk: add missing pkgconfig dependency (#9503) 2018-10-12 09:56:44 +02:00
Michael Kuhn
1200b19b52 dbus: add missing pkgconfig dependency (#9497) 2018-10-12 09:55:33 +02:00
sknigh
a7dc725e2d Ease nlohmann-json conflict with gcc 4.8 (#9506) 2018-10-12 09:45:54 +02:00
Michael Kuhn
2ae75702c0 libepoxy: fix build (#9508) 
- Add missing pkgconfig dependency
- Explicitly disable egl
 2018-10-12 09:34:09 +02:00
Denis Davydov
5196c1a51a dealii: add 9.0.1 and update to sha256 (#9511) 2018-10-12 09:17:26 +02:00
Satish Balay
91fbc59f22
amrex: add in new version for xsdk [18.09.1, 18.10] (#9501) 2018-10-11 12:47:21 -05:00
Miroslav Stoyanov
a3ffaefebd updated tasmanian package with v6.0, improved depend_on and conflicts information (#9438) 2018-10-11 11:25:20 -05:00
Satish Balay
0226546c29
superlu-dist: switch to sha256sum (#9499) 
replace 5.1.1 with 5.1.2 as 5.1.1 does not build for me. [and 5.1.3 is preferable in this 5.1 series anyway]
 2018-10-11 10:59:27 -05:00
Gustavo Chávez
4b50928a36 Update superlu-dist package.py to support latest release v6.0.0 (#9445) 
* superlu-dist: Update package.py for superlu-dist v6.0.0 using CMake

* superlu_dist: Update the header of package.py

* Specify lapack_blas and DCMAKE_INSTALL_LIBDIR
disable support for superlu-dist before v5
 2018-10-11 10:06:43 -05:00
Denis Davydov
a6fb2fdea4 trilinos: disable superlu-dist by default (#9492) 
current stable releases of PETSc and Trilinos have non-overlapping
requirements on Superlu-dist. For now turn it off by default in
Trilinos, which requires older versions.
 2018-10-11 08:19:32 -05:00
Michael Kuhn
d8414dd770 go: Add 1.11.1 (#9493) 2018-10-11 12:08:42 +02:00
Robert Blake
b18fea6c83 ncdu: add new versions (#9477) 2018-10-10 19:15:33 -07:00
Piotr Luszczek
b100d1fc40 Magma: add version 2.4.0 (#9478) 2018-10-10 19:14:31 -07:00
Denis Davydov
2914644b30 openblas: patch experimental USE_TLS makefile option for 0.3.3 (#9474) 2018-10-10 18:58:47 -07:00
Phil Carns
312de47594 update rdma-core package to specify rundir (#9370) 2018-10-10 18:51:19 -07:00
sknigh
aac8d52075 vtk: added v8.1.1, added option to disable libharu (#9475) 
* Added VTK 8.1.1, added option to disable libharu
* Add variant description to vtk+libharu
 2018-10-10 14:57:28 -07:00
Serban Maerean
113b750b89 Update compile flags for netlib-lapack when building with the XL compiler. (#9318) 
We need to use -O3 -qstrict -qnohot. Modified ibm-xl.patch and netlib-lapack
package file.
 2018-10-10 14:16:50 -07:00
sknigh
013d4ad6a0 Added sst-core and variant for core to sst-macro. (#9380) 2018-10-10 11:02:18 -07:00
Levi Baber
53b19e7919
perl-scalar-util-numeric: new package (#9466) 2018-10-10 12:35:37 -05:00
Gregory Lee
7699419fc1 new xdot.py package and necessary updates to GUI libs (#9179) 
* new xdot.py package and necessary updates to GUI libs

* new xdot.py package and necessary updates to GUI libs
 2018-10-10 19:07:51 +02:00
Michael Kuhn
e176f2a2f5 Fix missing dependencies and glibc build failures (#9106) 
* bison: Add missing build dependencies

bison also depends on cmp, which is currently not available in Spack.

* help2man: Add missing build dependency

* m4: Fix build with newer versions of glibc

* openssl: Add missing build dependency

openssl's configure script is actually a Perl script.

* texinfo: Add missing perl dependency

* diffutils: New package

* findutils: Fix build with newer versions of glibc

* mvapich2, mpich: Add missing findutils dependency
 2018-10-10 14:17:12 +02:00
Michael Kuhn
b85a910463 rdma-core: Fix checksum for @17.1 (#9480) 2018-10-10 14:06:51 +02:00
Seth R. Johnson
8ab6539c0e Add important variants to MOAB and Geant4 (#9409) 
* Add option to disable threads for Geant4
* Add option to enable DagMC in MOAB
* Explicitly add OFF flag when threading is disabled
* Fix unintentional enabling of C++14 in Geant4
  The following always evaluated to True:
    'c++14' or 'c++1y' in spec:
 2018-10-09 17:05:49 -07:00
Dan Han
aede227580 matlab: new version (#9427) 2018-10-09 16:58:52 -07:00
Levi Baber
3e565a734a braker: add missing deps (#9468) 2018-10-09 16:55:28 -07:00
sknigh
03231a39db Added nlohmann-json v3.3.0 (#9463) 2018-10-09 16:54:59 -07:00
Justin Stanley
6c4e0b1bf1 sspace-standard: add perl-perl4-corelibs dep, fix perl scripts (#9473) 
perl scripts were pointing to /usr/bin/perl, changed to point to
the spack-installed perl
 2018-10-09 16:54:32 -07:00
Greg Becker
ca0d9ae7f0
Make builtin flag handlers available in package scope (#8668) 
* Push default flag handlers into module scope

* Preserve backwards compatibility of builtin flag handler names

Ensure Spack continues to work for packages using the `Package.env_flags` idiom and equivalent.

* update docs and tests to match

* Update packages to match new syntax
 2018-10-09 15:18:31 -07:00
Mark W. Krentel
54bd049d99 xerces-c: add variant for transcoder, rework config flags. (#9393) 
* xerces-c: Add variant for choice of transcoder (gnuiconv, iconv, icu,
  macos, windows).  It's important to specify a --enable-transcoder
  option on the configure line or else xerces may make a different
  choice when multiple transcoders are available.
* Pass the compile flags to configure.  For cflags and cxxflags, this is
  necessary to respect the value from the spack install line.
  Otherwise, xerces (and any autotools package) will choose a default
  value that overrides the spack compiler wrapper.
* Add xerces version 3.2.2.
* icu4c needs the --enable-rpath configure option on Darwin
 2018-10-09 15:12:34 -07:00
Dan Han
5cafe1b4e8 blastplus: newest version 2.7.1 (#9472) 2018-10-09 13:22:34 -07:00
Satish Balay
5e4264ed89
xsdk: reorder develop version statements (#9469) 2018-10-09 14:19:29 -05:00
Denis Davydov
ab099e9ba3 trilinos: extend TPetra explicit instantiations and fix missing Teuchos counterparts (#9448) 2018-10-09 12:07:13 -07:00
Chris Green
5ebdc6076f New package: pythia6 (#9340) 
Includes optional extra code for compatibility with Root.
 2018-10-09 11:56:43 -07:00
Satish Balay
9ee8a1055b
petsc: add petsc-3.10.2 (#9467) 2018-10-09 13:14:41 -05:00
Robert Pavel
9c221228ef Removed gtk dependency from Candle (#9451) 
After talks with candle dev, removed unsatisfiable conflict with
candle-benchmark and opencv by disabling gtk in the candle spec
 2018-10-09 11:38:54 -06:00
Levi Baber
f12b42e8e6
Autofact: new package (#9317) 
* autofact: new package

* autofact: typo

* autofact: syntax

* autofact: deps

* autofact: perl mods path

* autofact: edit->patch and script path
 2018-10-09 12:26:46 -05:00
Justin Stanley
817ee344c5 perl-perl4-corelibs: new package (#9459) 2018-10-09 09:17:21 -05:00
Ricardo Silva
36941ffb45 New package: tldd (#9434) 
* New package: tldd

* https://gitlab.com/miscripts/tldd

* Improvements

* make it prefetchable by specifying a hash based version
* specify the constraints on pstreams versions (from INSTALL)

* Improvements

* Make it a Makefile Package and only overwrite the install_targets
* Remove the URL as there's really no downloadable 'tar ball' version
 2018-10-09 09:15:42 -05:00
Justin Stanley
22a56d86ae energyplus: new package starting at 8.9.0 (#9262) 
* energyplus: new package starting at 8.9.0

* energyplus: fix misleading comment

* energyplus: remove redundant version url
 2018-10-09 08:45:13 -05:00
Pieter Ghysels
838337da37 STRUMPACK: new package (#9429) 
* Initial commit for new package STRUMPACK, a linear solver library.

* Update to STRUMPACK version 3.0.3.
This adds a check for OpenMP task priority support (since OpenMP 4.5)
 2018-10-09 08:44:49 -05:00
Justin Stanley
8f4123e564 r-proto: added 1.0.0 (#9456) 
* r-proto: added 1.0.0

* r-proto: reorder versions
 2018-10-09 08:44:17 -05:00
Justin Stanley
b17fb74e5f ant: add tested 1.10.0, switch build target (#9358) 2018-10-08 17:09:56 -05:00
Justin Stanley
80100ffc39 treesub: new package starting at 0.2 (#9361) 
* treesub: new package starting at 0.2

* treesub: fix ant build, add exec script

* treesub: use portable octal format

* treesub: add license header

not sure how it even went missing.
 2018-10-08 16:26:51 -05:00
Miles Perry
4e20b16dbe added list URL for r-rodbc (#9460) 2018-10-08 16:25:52 -05:00
Justin Stanley
b8e0d5824e r-edger: add r-rcpp dependency (#9457) 
* r-edger: add r-rcpp dependency

* r-edger: add r-rcpp to link deps
 2018-10-08 16:25:31 -05:00
Simon Flood
84046b79b2 New package: pplacer (#9112) 
* New package: pplacer

Simple package - copies files and directory out of a zip file

* Update package.py
 2018-10-08 16:02:12 -05:00
Justin Stanley
b2e255fe5a figtree: new package starting at 1.4.3 (#9359) 
* figtree: new package starting at 1.4.3

* figtree: add java dep

* figtree: use portable octal format

* figtree: remove boilerplate
 2018-10-08 16:00:21 -05:00
snehring
c379f4ee24 sspace-standard: adding threads variant to perl dependency (#9452) 2018-10-08 15:41:36 -05:00
Justin Stanley
b62571ecdf r-readxl: added 1.1.0 (#9454) 2018-10-08 15:40:45 -05:00
Strahinja Trecakov
cf52083b74 perl-module-build new version (#9404) 2018-10-08 09:12:13 +02:00
dorier
e51b48d9a1 Catalyst Package: made Python mandatory at build time (#9432) 
The build process of Catalyst requires Python at build time (see line 86) even when the +python variant is not selected.
When the +python variant is selected, Python becomes required at build, link, and run time. There doesn't seem to be any restriction on the version of Python required when +python is not selected.
 2018-10-08 09:10:03 +02:00
dorier
baa664ffaa Fix: bug in VTK package (#9431) 
* Fix: bug in VTK package

Fix for issue 9423 (https://github.com/spack/spack/issues/9423): compilers other than clang don't have the `is_apple` property.

* VTK package: removing trailing whitespace

So flake8 stops complaining.
 2018-10-08 09:08:50 +02:00
Matthias Wolf
c0249eddb1 py-pyspark: new package (#9419) 2018-10-08 09:03:31 +02:00
Jon Rood
2e11d5914c Update HYPRE with version 2.15.0. (#9443) 2018-10-08 08:58:02 +02:00
DDevHan
75fe3a5436 Pacvim new (#9273) 
* pacvim: new package

* pacvim: removed fixme's

* pacvim: added full docstring

* pacvim: fixing docstring
 2018-10-05 12:07:22 -05:00
Matthias Wolf
d77ed45bfe py-jprops: new package @ 1.0.2 (#9417) 2018-10-05 10:58:49 -05:00
DDevHan
b8fcc4d230 Canu-Updated to lastest version:1.7.1 (#9413) 
* Canu-Updated to lastest version:1.7.1

* canu: added sha256 hash as comment above version

* canu: changed to sha256
 2018-10-05 10:56:03 -05:00
Reid Priedhorsky
7c35c70217 add Charliecloud 0.9.2 and 0.9.3 (#9441) 2018-10-05 11:16:07 +02:00
Justin Stanley
011ad24950 salmon: remove static link to libstdc++ (#9343) 2018-10-04 20:57:33 -05:00
Patrick Gartung
d981f28a80 Davix version update (#9304) 
* Replace old version with new version
* Remove patch only needed by CMS
 2018-10-04 16:12:53 -07:00
Patrick Gartung
5a20217a54 VecGeom: add versions and cxxstd variant (#9303) 2018-10-04 16:11:28 -07:00
Patrick Gartung
9b5f3d77f3 Valgrind: add ubsan and only64bit variants. (#9302) 
* Add conflict for +ubsan when building with clang on MacOS
* only64bit is enabled by default
 2018-10-04 16:06:10 -07:00
Matthias Wolf
2b3e7dbd93 py-py4j: add version 0.10.6 (#9418) 2018-10-04 15:32:54 -05:00
dorier
872e3c76f6 Package mesa: added dependency on zlib (#9424) 2018-10-03 19:48:42 -07:00
Denis Davydov
600acbbe66 python: add details on missing library to error message (#9332) 
When a library cannot be found, the exception now includes the name
of the library that was requested.
 2018-10-03 19:46:14 -07:00
Cody Balos
219846684b SUNDIALS: add new versions (#9401) 
* Add SUNDIALS 3.2.0 and 4.0.0-dev.2 releases.
* Update CMake dependency version constraints
* Update CMake args to find raja dependency
 2018-10-03 19:37:54 -07:00
Daryl W. Grunau
7f4b436ab6 ParaView: add versions (#9428) 2018-10-03 19:34:38 -07:00
Geoffrey Oxberry
98cdd616ca py-flake8: enum34 not required for python 3.4 and up (#9415) 
py-flake8 only requires py-enum34 when using a python version
earlier than 3.4
 2018-10-03 19:33:22 -07:00
Robert Pavel
479e71a832 Specified Maximum Matplotlib for Candle (#9425) 
Specifying that Candle-benchmarks requires matplotlib 2.x due to
matplotlib 3.x requiring python 3.x
 2018-10-03 11:47:17 -06:00
Valentin Clement (バレンタイン クレメン)
a97e9cb282 CLAW Compiler: Add Spack Package (#9405) 2018-10-03 17:17:13 +02:00
Matthias Wolf
fe60b2f6de py-progress: new package. (#9420) 2018-10-03 17:12:30 +02:00
Christoph Junghans
63844a97f8
openmc: version bump (#7974) 
* openmc: version bump

* s/mit-crpg/openmc-dev/
 2018-10-03 09:12:14 -06:00
Satish Balay
297f8537b5
trilinos: superlu_dist patch is now in trilinos develop - so removing it (#9422) 
https://github.com/trilinos/Trilinos/pull/3209
 2018-10-03 09:52:12 -05:00
Satish Balay
846e2c7ca9
PETSc: configure use CFLAGS,FFLAGS,CXXFLAGS from spack (#9383) 2018-10-03 08:19:43 -05:00
alcharal
c46a7a61f0 Abyss: added variant maxk (#9280) 2018-10-02 17:27:25 -07:00
dorier
8f29fbb605 Adding new versions to Catalyst package (#9267) 2018-10-02 17:25:56 -07:00
Mario Melara
eff3ad3346 Spades: add version 3.12 (#9286) 2018-10-02 17:24:39 -07:00
sknigh
d056427a00 Added cudnn 7.3 (#9400) 2018-10-02 17:24:13 -07:00
sknigh
89ccaa2472 Added perl 5.28 (#9379) 2018-10-02 15:48:28 -07:00
Abhinav Bhatele
0352b4808e [WIP] Release 2.0 of the ECP Proxy Apps suite (#9368) 
* Release 2.0 of the ECP Proxy Apps suite

* update laghos version

* make install dir structure consistent across all ecp-proxy-apps

* minor

* update macsio version
 2018-10-02 16:35:41 -06:00
Gregory Lee
676b3b0364 added py-matplotlib version 3.0.0 (#9335) 2018-10-02 15:35:06 -07:00
Abhinav Bhatele
d962e65cf2 PICSAR: new package (#9411) 2018-10-02 16:04:49 -06:00
rvinaybharadwaj
46a9121f00 Spackage for Thornado-mini (#9363) 2018-10-02 16:03:58 -06:00
Abhinav Bhatele
f6fb176d10 PICSARlite: actually builds PICSARlite now instead of PICSAR (#9410) 
also removed variants which shouldn't be there
 2018-10-02 15:46:31 -06:00
Abhinav Bhatele
1ba061f6ec MACSio: update package (#9412) 2018-10-02 15:46:09 -06:00