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13424 commits

Author SHA1 Message Date
t-nojiri
d2673ac56c
openfoam: Fix for aarch64 (#19803) 
* openfoam: Fix for aarch64

* openfoam: Add comment for openfoam-org
 2020-11-13 10:45:42 -06:00
Ganesh Kumar
d40a35e8d7
ROCm 3.9 Stage2 recipe (#19838) 
Co-authored-by: root <root@mlseqa-hyd-virt-srv-07.amd.com>
 2020-11-12 23:04:19 -06:00
Joseph Schoonover
d346e877ef
Add feq-parse package (#19891) 
Co-authored-by: Joe Schoonover <joe@fluidnumerics.com>
 2020-11-12 22:31:04 -06:00
Tim Haines
a1e9d584e1
binutils: add version 2.35.1 (#19827) 2020-11-12 19:05:24 -06:00
Robert Blake
aeafe18b49
openmpi: external detection support (#18600) 2020-11-12 13:03:35 -08:00
Adam J. Stewart
f46bd411f4
py-cython: python is a link dep (#19768) 2020-11-12 12:53:13 -08:00
Adam J. Stewart
2fc2a4cd2a
py-matplotlib: set LIBRARY_PATH to locate link deps (#19855) 
* py-matplotlib: set LIBRARY_PATH to locate link deps

* py-matplotlib: add v3.3.3
 2020-11-12 12:50:44 -08:00
Adam J. Stewart
37e51eb2a5
OpenSSL: libs may be in lib64 directory (#19862) 2020-11-12 12:45:45 -08:00
vvolkl
72e66bd01f
[gaudi] v35r0 (#19878) 
* [gaudi] v35r0

* [gaudi] format

* [gaudi] comments from #19878
 2020-11-12 14:43:06 -06:00
tcojean
978e85d669
Add smoke tests to Ginkgo. (#19888) 2020-11-12 14:42:34 -06:00
eugeneswalker
81cab3b271
suite-sparse: add deps: mpfr, gmp (#19883) 2020-11-12 11:29:07 -08:00
Morten Kristensen
8cf2806f00
py-vermin: add latest version 1.0.3 (#19886) 2020-11-12 13:23:38 -06:00
Wouter Deconinck
b0d2586f52
[acts] conflicts with %gcc@:7 since @0.23: due to c++17 <charconv> (#19881) 2020-11-12 13:08:12 -06:00
Brian Spilner
2a8dba48da
new release: cdo-1.9.9 (#19876) 2020-11-12 11:29:57 -06:00
t-nojiri
301b94d338
elpa: Fix for aarch64 (#19872) 2020-11-12 11:24:45 -06:00
Satish Balay
757b74aeff
xsdk@0.6.0 (#19846) 
Update:
 hypre@2.20.0
 mfem@4.2.0
 superlu-dist@6.4.0
 trilinos@13.0.1
 datatransferkit@3.1-rc2
 petsc@3.14.1
 dealii@9.2.0
 pflotran@xsdk-0.6.0
 alquimia@xsdk-0.6.0
 sundials@5.5.0
 plasma@20.9.20
 magma@2.5.4
 amrex@20.10
 slepc@3.14.0
 omega-h@9.32.5
 strumpack@5.0.0
 pumi@2.2.5
 tasmanian@7.3
 phist@1.9.3
 ginkgo@1.3.0
 py-libensemble@0.7.1
 precice@2.1.1
 butterflypack@1.2.1

New:
 heffte@2.0.0
 slate@2020.10.00

Variants:
 datatransferkit
 heffte
 slate

petsc: enable +cuda
sundials: enable +cuda +trilinos
strumpack: enable +cuda
 2020-11-12 11:15:29 -06:00
Desmond
9f7ad82665
Package/r bigalgebra (#19826) 
* py-json-get: new package at 1.1.1

* py-json-get: new package at 1.1.1

* r-bigalgebra: new package at 0.8.4

* r-bigalgebra: new package at 0.8.4 with corrections

* Added an additional change to tarball and dependencies

* removing accidentally added file

* Added tarball that uses mirror and removed redundant dependencies

* Fixed version and added dep.

* Updated checksum

* Fixed urls

* Added list_url

Co-authored-by: las_djorton <las_djorton@build.las.iastate.edu>
 2020-11-12 11:13:20 -06:00
Pieter Ghysels
d1493fb3d8
SuperLU-Dist: Add CUDA variant (#19847) 
* Add CUDA support to superlu-dist

* Use spec['cuda'].libs.directories[0] iso spec['cuda'].prefix.lib
so it works for both lib and lib64

The suggested:
args.append('-DTPL_CUDA_LIBRARIES=' +
            spec['cuda'].libs.ld_flags)
did not work because it does not link with cuBLAS.
 2020-11-12 08:57:44 -06:00
Jean-Paul Pelteret
821b195ba4
Fix scalapack build error (#19824) 2020-11-12 08:55:58 -06:00
Satish Balay
a99cc0fac0
kokkos add "graviton" to spack_micro_arch_map (#19869) 
* kokkos add "graviton" to spack_micro_arch_map

* also add "graviton2"
 2020-11-12 08:55:37 -06:00
Dr. Christian Tacke
b9f20c2351
yaml-cpp: Improve shared library building (#19866) 
* No version of yaml-cpp in spack can build shared AND
  static libraries at the same time.  So drop the "static"
  variant and let "shared" handle that alone.

  Or in other words: No version handles the
  BUILD_STATIC_LIBS flag.

* The flag for building shared libraries changed from
  BUILD_SHARED_LIBS to YAML_BUILD_SHARED_LIBS at some
  point. So just pass both flags.

* Use the newer define_from_variant.
 2020-11-11 20:05:58 -06:00
Dr. Christian Tacke
2929f59c03
msgpack-c: Add Version 3.1.1 (#19863) 2020-11-11 12:27:28 -06:00
Jen Herting
3dab441986
New package: py-cuml (#19474) 
* [py-cuml] created template

* [py-cuml] setup phases and added build_directory

* [py-cuml] added dependencies

* [py-cuml] depends on libcumlprims

* [py-cuml] requiring multigpu version

* [py-cuml] figuring out the best way to get concretization to happen cleanly

* [py-cuml] removed singlegpu variat from libcuml

* [py-cuml] depends on py-cudf

* [py-cuml] depends on cupy

* [py-cuml] fixed typoo

* [py-cuml] depends on py-scipy

* [py-cuml] depends on py-treelite

* [py-cuml] py-treelite is now a variant of treelite

* [py-cuml] depends on joblib

* [py-cuml] depends on py-scikit-learn

* [py-cuml] flake8

* [py-cuml] added homepage and description. removed fixmes

* [py-cuml] updated checksum
 2020-11-11 12:27:12 -06:00
Filippo Spiga
e828641d80
Adding support to build ucx development branch (#18089) 
* Enabling build of v1.9.x development branch.

* v1.8.1 is the preferred (stable) version.

* Fixing code style

Co-authored-by: Filippo Spiga <fspiga@nvidia.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
 2020-11-11 10:58:29 -06:00
Jen Herting
b660a2112f
New package: libcuml (#19471) 
* [libcuml] created template

* [libcuml] set cmake list dir

* [libcuml] added some dependencies

* [libcuml] adding some default cmake args

* [libcuml] depends on nccl

* [libcuml] temporarily disabling cuml prims building

* [libcuml] building internal faiss?

* [libcuml] added dependency treelite

* [libcuml] depends on google_test

* [libcuml] forcing single gpu per: https://github.com/rapidsai/cuml/issues/2528#issuecomment-657675957

* [libcuml] added prims?

* [libcuml] adding libcumlcomms ?

* Revert "[libcuml] adding libcumlcomms ?"

This reverts commit 0e0765b7d4d27bdc01d54d24e8c2f9eac1cb4eb2.

* Revert "[libcuml] added prims?"

This reverts commit d0b1f868ea5e425cc7d1a5ce7adc642258dfc38e.

* [libcuml] added varient single gpu

* [libcuml] removed variant singlegpu

* [libcuml] added homepage and description. removed fixmes

* [libcuml] flake8

* [libcuml] cleaning up leftover commented out code

* [libcuml] updated checksum added ucx dependency
 2020-11-11 10:55:57 -06:00
Sreenivasa Murthy Kolam
f5c7a3619a
add spack recipe for rocm version of the tensile (#19669) 
* add spack recipe for rocm version of the tensile

* fix flake8 error
 2020-11-11 10:55:23 -06:00
Greg Becker
229fc11fdb
axom: devtools require llvm clang-format (#19740) 
* follow-up to previous PR

* build type
 2020-11-11 10:54:24 -06:00
vvolkl
2c55d47c1e
[podio] set pythonpath correctly (#19779) 
* [podio] put python dir in python path

* Update var/spack/repos/builtin/packages/podio/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
 2020-11-11 10:53:56 -06:00
Kai Torben Ohlhus
a6011ccbb7
suite-sparse: add versions 5.8.0 and 5.8.1 (#19812) 
Update homepage URL and see release notes:
- https://github.com/DrTimothyAldenDavis/SuiteSparse/releases/tag/v5.8.1
- https://github.com/DrTimothyAldenDavis/SuiteSparse/releases/tag/v5.8.0
 2020-11-11 10:53:27 -06:00
t-nojiri
48093350c6
arbor: Add version 0.4 (#19839) 2020-11-11 10:50:32 -06:00
Stephen Hudson
56df3fcbaa
Add optional deps mpmath and deap to py-libensemble (#19852) 2020-11-11 10:45:16 -06:00
Keita Iwabuchi
8edd245bb3
Metall package: add v0.6 (#19854) 
* Metall: add version 0.2

* Add Metall v0.3

* Update Metall package to v0.4 and v0.5.

* Metall package: add v0.6
 2020-11-11 10:43:00 -06:00
t-nojiri
3167aec0ab
ace: Add version 6.5.12 (#19856) 2020-11-11 10:42:30 -06:00
Mark Olesen
a90324a5b2
openfoam: remove mplibUSER provisioning (#19861) 
- has never been used by the spack package or by the upstream package

Co-authored-by: Mark Olesen <Mark.Olesen@esi-group.com>
 2020-11-11 10:38:50 -06:00
Ganesh Kumar
b1ca2a4346
ROCm3.9 recipe for rocblas, hipblas & rocsolver (#19841) 
* ROCm3.9 recipe for rocblas, hipblas & rocsolver

* review comments

* review comments

Co-authored-by: root <root@mlseqa-hyd-virt-srv-07.amd.com>
 2020-11-11 10:24:25 -06:00
Justin S
15fbbdea7d
soapdenovo2: add 242 (#19849) 2020-11-10 20:12:28 -06:00
Christoph Junghans
f7e3ef1b5c
votca-xtp: update deps (#19850) 2020-11-10 15:01:25 -07:00
t-nojiri
dd96a86511
abi-dumper: Add phases (#19807) 2020-11-10 12:53:39 -06:00
Phil Tooley
db5aa927db
py-torchvision: gather correct cuda_arch setting from py-torch (#19845) 
* py-torchvision: gather correct cuda_arch setting from py-torch dependency

* py-torchvision: remove unneeded variant
 2020-11-10 12:28:01 -06:00
Daryl W. Grunau
f7f4171d4e
py-scipy: set F90 for all compilers (#19818) 
* set F90 when compiling with Intel

* set F90 for all compilers

Co-authored-by: Daryl W. Grunau <dwg@lanl.gov>
 2020-11-10 10:52:54 -06:00
Wouter Deconinck
2913903e6a
[geant4] depends_on glu when +opengl (#19821) 2020-11-10 10:29:21 +00:00
Adam J. Stewart
65cef0a3ad
py-gpytorch: add v1.2.1 (#19796) 2020-11-09 20:24:35 -05:00
h-denpo
d8d0935a24
saga-gis: add "depends_on('libsm', type='link')" (#19805) 2020-11-09 16:46:33 -06:00
Kai Torben Ohlhus
4e2f27141c
openblas: Add versions 0.3.11 and 0.3.12 (#19811) 
[OpenBLAS 0.3.11](https://github.com/xianyi/OpenBLAS/releases/tag/v0.3.11) and [OpenBLAS 0.3.12](https://github.com/xianyi/OpenBLAS/releases/tag/v0.3.12) were released.
 2020-11-09 16:33:54 -06:00
Wouter Deconinck
f69643512c
[opencascade] depends_on libxext, libxmu, libxt, libxi (#19823) 
* [opencascade] depends_on libxmu and libxi

* [opencascade] depends_on libxext and libxt
 2020-11-09 16:24:51 -06:00
Satish Balay
01188396da
Trilinos: add 13.0.1 (#19822) 2020-11-09 16:06:27 -05:00
Erik Schnetter
9619f77550
spiral: new version 8.2.0 (#19794) 
* spiral: new version 8.2.0

* spiral: Sort versions anti-chronologically
 2020-11-09 14:32:49 -06:00
Toyohisa Kameyama
52eecad65c
py-pygps: new package. (#19774) 
* py-pygps: new package.

* fixed url.
 2020-11-09 14:32:10 -06:00
Morten Kristensen
a047ea84a3
py-vermin: add latest version 1.0.2 (#19820) 2020-11-09 14:31:21 -06:00
Satish Balay
a0216922f1
add sundials 5.5.0 (#19819) 
(with xsdk build fixes, including mkl, superlu-dist)

Co-authored-by: Cody J. Balos <balos1@llnl.gov>
 2020-11-09 13:59:55 -06:00