peetsv
d0a10edb67
nextflow: adding version 0.21.0 ( #6722 )
2017-12-19 09:07:33 +01:00
Peter Doak
d4c84be91b
Emacs: added gnutls variant (tested on Centos 7) ( #6711 )
2017-12-19 08:36:54 +01:00
Denis Davydov
69f959ec0b
gmsh: add 3.0.6 ( #6718 )
2017-12-19 08:31:23 +01:00
junkudo
d69d692203
CoinHSL : Prevent CoinHSL from building in parallel ( #6715 )
...
CoinHSL does not seem to be able to be built in parallel. This commit forces serial compilation.
2017-12-19 08:30:39 +01:00
Denis Davydov
548c225d45
dealii: add GMSH, add CMAKE_FIND_APPBUNDLE to CMakePackage ( #6723 )
...
* dealii: add GMSH dependency
* CMakePackage: add CMAKE_FIND_APPBUNDLE to prevent picking up binaries from /Applications
2017-12-19 08:28:55 +01:00
peetsv
e8de22ce46
lftp: adding version 4.6.4 ( #6721 )
2017-12-19 08:19:33 +01:00
Mark Olesen
b3e9192d18
openfoam-org: new version ( #6686 )
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Add new version with a patch.
2017-12-18 19:47:49 -08:00
peetsv
f7a5a27138
IGV: new package ( #6710 )
2017-12-18 19:37:09 -08:00
Benedikt Riedel
36fa574779
globus-toolkit: add version and openssl dependency ( #6617 )
2017-12-18 15:23:56 -08:00
Douglas Duckworth
d3519af7de
relion - added new stable version 2.1 ( #6706 )
2017-12-18 10:38:20 -08:00
healther
0cff0fba73
fix post install method for py3 in mercurial ( #6497 )
...
* fix post install method for py3 in mercurial
* Update package.py
* Update package.py
* use print_str instead of manual print detection
* Update package.py
* use only depends_on
* Update package.py
* Update package.py
State py3 compatibility for @4.3: according to setup.py from the 4.3.tar.gz from pypi
2017-12-17 12:00:58 -06:00
Sergey Kosukhin
576ef5e2b3
Package 'cdo': get rid of unnecessary dependency on MPI C++ library. ( #6632 )
2017-12-16 19:48:56 -07:00
nshtg
2a639097b0
Add new package signify ( #6645 )
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OpenBSD tool to sign and verify signatures on files.
See https://github.com/aperezdc/signify
2017-12-16 19:47:59 -07:00
Eric
7d800a0fc2
breseq: Create new package ( #6648 )
2017-12-16 19:47:11 -07:00
fpruvost
6c81cf1a78
build lapacke with tmg ( #6654 )
2017-12-16 19:43:46 -07:00
David Orman
7b8d889d31
bwa: added version 0.7.16a and checksum ( #6658 )
2017-12-16 19:43:02 -07:00
Jack Morrison
d4cc1ac86b
Hadoop: Replace broken url ( #6671 )
2017-12-16 19:42:03 -07:00
David Böhme
3467c207c8
Caliper update, add version 1.6.0 ( #6680 )
2017-12-16 19:39:52 -07:00
Eric
dac09dd5fb
py-bx-python: Create new package ( #6672 )
2017-12-16 19:38:59 -07:00
Eric
d08dc0c019
py-tetoolkit: Create new package ( #6673 )
2017-12-16 19:38:36 -07:00
Eric
d3545ed1b3
py-pandas: add versions 0.19.2 and 0.21.1 ( #6687 )
2017-12-16 19:38:02 -07:00
Paschalis Korosoglou
a69cfd5f78
Add petsc version 3.8.3 ( #6688 )
2017-12-16 19:37:35 -07:00
Paschalis Korosoglou
61dbd3182d
Add clanguage variant for petsc ( #6689 )
2017-12-16 19:37:20 -07:00
Eric
87420dccee
bedtools2: Add version 2.27.1 ( #6693 )
2017-12-16 19:36:35 -07:00
peetsv
5d0e7abcc5
MetaSV: adding new package ( #6691 )
2017-12-16 19:36:11 -07:00
Eric
5539c94e67
PANDAseq: Create new package ( #6694 )
2017-12-16 19:35:48 -07:00
Eric
554d4045fa
DeNovoGear: Create new package ( #6699 )
2017-12-16 19:34:53 -07:00
lingnanyuan
34cf796b54
mefit: Create new package. ( #6700 )
2017-12-16 19:34:30 -07:00
Denis Davydov
f78418d8bb
moltemplate: add new package ( #6702 )
2017-12-16 19:33:28 -07:00
David Orman
176b518d4b
new package: gatk ( #6674 )
2017-12-15 11:00:55 -08:00
Jon Rood
7369ba21bf
new package: Percept ( #6636 )
...
This also adds the 'exception' boost library to the set of default
libraries built by boost.
2017-12-14 18:11:47 -08:00
Douglas Duckworth
1aed3f7c01
added breakdancer ( #6319 )
2017-12-14 14:43:32 -07:00
Massimiliano Culpo
6c1fa37e3d
fftw: added version 3.3.7 ( #6678 )
2017-12-14 21:38:33 +01:00
Jon Rood
b447c2ba51
Add TIOGA package and optional dependency of Nalu on TIOGA ( #6638 )
2017-12-14 11:46:25 -08:00
Scott Wittenburg
ce832fca59
libharu: Make dependencies on zlib and libpng explicit ( #6682 )
2017-12-14 08:58:42 +01:00
Douglas Duckworth
5a66065dfa
relion: add version and cuda arch variant ( #6317 )
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Add preferred version 2.0.3. Added beta version. Added conflict with
gcc versions >= 5 when building with cuda@8 (which is currently the
only supported cuda version). Added cuda architecture variant. Added
comment about current lack of cuda@9 support.
2017-12-13 10:30:38 -08:00
Denis Davydov
c0aa12111b
tasmanian: add new package ( #6659 )
2017-12-13 16:01:51 +01:00
Axel Huebl
836bf65250
CUDA: 9.1 ( #6663 )
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Add the latest CUDA release, 9.1
2017-12-13 14:43:40 +01:00
peetsv
2e4c9e47a8
py-pysam: adding old version 0.7.7 ( #6675 )
2017-12-13 09:01:45 +01:00
Eric
5fa9e61321
SPAdes: add version 3.11.1 ( #6668 )
2017-12-13 08:57:29 +01:00
David Orman
c5cb8ae159
picard: added version 2.13.2 ( #6669 )
2017-12-13 08:57:06 +01:00
Audrey Thoma
45784af7f2
new packages: biopieces and dependencies ( #6478 )
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This also adds the tcl, tk, and libx11 dependencies to ruby. All other
changes are new packages.
2017-12-12 18:35:13 -08:00
Christoph Junghans
27be66420a
laghos: inject CXX ( #6664 )
2017-12-12 17:26:02 -07:00
Christoph Junghans
e80a27d713
swfft: inject CC/CXX ( #6666 )
2017-12-12 17:25:48 -07:00
Satish Balay
80284617a5
xsdk: update xsdk@develop to use sundials, plasma, magma ( #6649 )
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Also update xsdk@0.3.0 to use a fixed version of magma
2017-12-12 09:31:08 -08:00
nshtg
e831ecbf3a
Add new package minisign ( #6644 )
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A dead simple tool to sign files and verify signatures.
See https://jedisct1.github.io/minisign
2017-12-11 17:27:40 -07:00
nshtg
45e8e4b4fb
libsodium: Update to 1.0.15 ( #6643 )
2017-12-11 17:27:09 -07:00
nshtg
25aa21a7a7
git: Update to 2.15.1 ( #6642 )
2017-12-11 17:26:53 -07:00
nshtg
74938f58d2
openssl: Update to 1.0.2n ( #6641 )
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From 07.12.2017, fixes CVE-2017-3737
2017-12-11 17:26:37 -07:00
Brian Van Essen
6fec473e9e
Py h5py update ( #6635 )
2017-12-11 17:26:13 -07:00
