Richard Berger
d06a102e69
Various FleCSI updates ( #41068 )
...
* flecsi: remove deprecated versions
* flecsi: add explicit conflict for backend=hpx +hdf5
* flecsi: propagate +openmp to kokkos and legion
* flecsi: remove doc variant prior to @2.2
It wouldn't do anything meaningful and won't install the documentation.
---------
Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2023-12-01 09:41:33 -08:00
Rohit Goswami
b0f0d2f1fb
dftbplus: Update and add upstream maintainer ( #33243 )
...
* dftbp: Update and add upstream maintainer
* dftbp: Trust in the hybrid cmake builds
* dftbp: Handle scalapack better
* dftbp: Refactor as per review
* dftbp: Build shared for python
* dftbp: Address review comments
* dftbp: Add another maintainer
* dftp: Fix typo
* dftbp: Arpack for serial builds only
* dftbp: Update option docs
* dftbp: Update documentation for elsi
* dftbp: Add comment for context
* dftbp: Tighter bounds on python
* dftbp: Add negf only when shared
* dftbp: Fix typo
* dftbp: Update sha256
* dftpb: Add when directive for cmake and ninja
* dftbp: Enforce comment
---------
Co-authored-by: Tamara Dahlgren <dahlgren1@llnl.gov>
Co-authored-by: awvwgk <awvwgk@users.noreply.github.com>
Co-authored-by: iamashwin99 <iamashwin99@users.noreply.github.com>
Co-authored-by: Ashwin Kumar Karnad <46030335+iamashwin99@users.noreply.github.com>
Co-authored-by: Sebastian Ehlert <28669218+awvwgk@users.noreply.github.com>
Co-authored-by: tldahlgren <tldahlgren@users.noreply.github.com>
2023-12-01 09:34:11 -08:00
Victoria Cherkas
6029b600f0
eccodes: add v2.32.0, v2.31.0 ( #40770 )
...
* eccodes new versions and dependencies
* Suggested changes for multiple variant defaults
* Update var/spack/repos/builtin/packages/eccodes/package.py
---------
Co-authored-by: Sergey Kosukhin <skosukhin@gmail.com>
2023-12-01 09:25:31 -08:00
dependabot[bot]
e6107e336c
build(deps): bump docutils from 0.18.1 to 0.20.1 in /lib/spack/docs ( #38174 )
...
Bumps [docutils](https://docutils.sourceforge.io/ ) from 0.18.1 to 0.20.1.
---
updated-dependencies:
- dependency-name: docutils
dependency-type: direct:production
update-type: version-update:semver-minor
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2023-12-01 17:16:34 +01:00
Lydéric Debusschère
9ef57c3c86
py-cma: new package ( #41326 )
...
* py-pycma: new package
* rename py-pycma in py-cma; py-cma: use pypi instead of github sources
---------
Co-authored-by: LydDeb <lyderic.debusschere@eolen.com>
2023-12-01 08:54:02 -06:00
Lydéric Debusschère
3b021bb4ac
py-mahotas: new package ( #41329 )
...
* py-mahotas: new package
* py-mahotas: relax version constraint on numpy
---------
Co-authored-by: LydDeb <lyderic.debusschere@eolen.com>
2023-12-01 08:52:37 -06:00
Richard Berger
42bac83c2e
LAMMPS updates ( #40879 )
...
* lammps: add new stable version 20230802.1
* lammps: add missing potential download for +mesont
* lammps: fix python package install
* Update var/spack/repos/builtin/packages/lammps/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* lammps: py-numpy and py-mpi4py should be build and run deps
* lammps: add new 20231121 release
- MPIIO package has been removed -> disable mpiio variant
- LAMMPS_EXCEPTIONS is now always on -> disable exceptions variant
- CMake 3.16+ is now required
- Kokkos 4.1.0 is now supported
---------
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-12-01 07:13:56 -07:00
Lydéric Debusschère
7e38e9e515
py-xmlplain: new package ( #41324 )
...
Co-authored-by: LydDeb <lyderic.debusschere@eolen.com>
2023-12-01 08:02:24 -06:00
Lydéric Debusschère
cf5ffedc23
py-requests-file: new package ( #41328 )
...
Co-authored-by: LydDeb <lyderic.debusschere@eolen.com>
2023-12-01 08:00:23 -06:00
Lydéric Debusschère
3a9aea753d
[add] py-autodocsumm: new package ( #41309 )
...
Co-authored-by: LydDeb <lyderic.debusschere@eolen.com>
2023-12-01 07:53:57 -06:00
Lydéric Debusschère
c61da8381c
py-sphinx-jinja2-compat: new package ( #41310 )
...
* [add] py-sphinx-jinja2-compat: new package
* py-whey-pth: new package, dependence of py-sphinx-jinja2-compat
---------
Co-authored-by: LydDeb <lyderic.debusschere@eolen.com>
2023-12-01 07:53:02 -06:00
Lydéric Debusschère
8de814eddf
py-sphinx-removed-in: new package ( #41325 )
...
* py-sphinx-removed-in: new package
* py-sphinx-removed-in: fix dependence
---------
Co-authored-by: LydDeb <lyderic.debusschere@eolen.com>
2023-12-01 07:43:40 -06:00
Satish Balay
c9341a2532
petsc, py-petsc4py: add v3.20.2 ( #41366 )
2023-12-01 07:42:48 -06:00
Manuela Kuhn
8b202b3fb2
py-urllib3: add 2.1.0 and 2.0.7 ( #41358 )
2023-12-01 07:39:18 -06:00
Dom Heinzeller
2ecc260e0e
Update py-cylc-flow (add version 8.2.3) ( #41209 )
...
* Add missing runtime dependency on py-colorama to py-ansimarkup
* Add py-metomi-isodatetime@3.1.0
* New package py-graphql-relay
* Update py-cylc-flowi, add version 8.2.3
* Fix merge conflict
* Revert mistake in var/spack/repos/builtin/packages/py-cylc-flow/package.py
* Update py-metomi-isodatetime dependencies for py-cylc-flow
* Add 'climbfuji' to list of maintainers for py-cylc-flow
2023-12-01 07:33:34 -06:00
Christopher Christofi
6130fe8f57
py-beartype: new package with versions 0.15.0 and 0.16.2 ( #39759 )
...
* py-beartype: new package with version 0.15.0
* Update var/spack/repos/builtin/packages/py-beartype/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* py-beartype: depend on python 3.8 or higher
* py-beartype: add new version 0.16.2
---------
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-12-01 07:29:30 -06:00
Adam J. Stewart
d3aa7a620e
py-mpi4py: fix build with Apple Clang ( #41362 )
...
* py-mpi4py: fix build with Apple Clang
* [@spackbot] updating style on behalf of adamjstewart
---------
Co-authored-by: adamjstewart <adamjstewart@users.noreply.github.com>
2023-12-01 05:33:14 -06:00
dependabot[bot]
2794e14870
build(deps): bump pygments from 2.17.1 to 2.17.2 in /lib/spack/docs ( #41212 )
...
Bumps [pygments](https://github.com/pygments/pygments ) from 2.17.1 to 2.17.2.
- [Release notes](https://github.com/pygments/pygments/releases )
- [Changelog](https://github.com/pygments/pygments/blob/2.17.2/CHANGES )
- [Commits](https://github.com/pygments/pygments/compare/2.17.1...2.17.2 )
---
updated-dependencies:
- dependency-name: pygments
dependency-type: direct:production
update-type: version-update:semver-patch
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2023-12-01 12:29:42 +01:00
dependabot[bot]
cc1e990c7e
build(deps): bump sphinx-rtd-theme in /lib/spack/docs ( #41305 )
...
Bumps [sphinx-rtd-theme](https://github.com/readthedocs/sphinx_rtd_theme ) from 1.3.0 to 2.0.0.
- [Changelog](https://github.com/readthedocs/sphinx_rtd_theme/blob/master/docs/changelog.rst )
- [Commits](https://github.com/readthedocs/sphinx_rtd_theme/compare/1.3.0...2.0.0 )
---
updated-dependencies:
- dependency-name: sphinx-rtd-theme
dependency-type: direct:production
update-type: version-update:semver-major
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2023-12-01 12:29:22 +01:00
dependabot[bot]
59e6b0b100
build(deps): bump mypy from 1.7.0 to 1.7.1 in /lib/spack/docs ( #41243 )
...
Bumps [mypy](https://github.com/python/mypy ) from 1.7.0 to 1.7.1.
- [Changelog](https://github.com/python/mypy/blob/master/CHANGELOG.md )
- [Commits](https://github.com/python/mypy/compare/v1.7.0...v1.7.1 )
---
updated-dependencies:
- dependency-name: mypy
dependency-type: direct:production
update-type: version-update:semver-patch
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2023-12-01 09:22:23 +01:00
dependabot[bot]
ec53d02814
build(deps): bump docker/metadata-action from 5.0.0 to 5.2.0 ( #41371 )
...
Bumps [docker/metadata-action](https://github.com/docker/metadata-action ) from 5.0.0 to 5.2.0.
- [Release notes](https://github.com/docker/metadata-action/releases )
- [Commits](96383f4557...e6428a5c4e
2023-12-01 09:21:56 +01:00
dependabot[bot]
389c77cf83
build(deps): bump mypy from 1.6.1 to 1.7.1 in /.github/workflows/style ( #41242 )
...
Bumps [mypy](https://github.com/python/mypy ) from 1.6.1 to 1.7.1.
- [Changelog](https://github.com/python/mypy/blob/master/CHANGELOG.md )
- [Commits](https://github.com/python/mypy/compare/v1.6.1...v1.7.1 )
---
updated-dependencies:
- dependency-name: mypy
dependency-type: direct:production
update-type: version-update:semver-minor
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2023-12-01 09:20:56 +01:00
Vicente Bolea
17c87b4c29
vtk-m: bump vtk-m 2.1.0 ( #41351 )
...
* vtk-m: bump vtk-m 2.1.0
* Update package.py
* Update package.py
2023-11-30 20:18:15 -08:00
Thomas Helfer
91453c5ba0
Add support for new versions of TFEL and MGIS ( #41357 )
...
* Add new versions to TFEL and MGIS
2023-11-30 19:47:57 -07:00
Robert Cohn
a587a10c86
[intel-mpi] deprecation ( #41322 )
2023-11-30 19:52:42 -05:00
Derek Ryan Strong
cfe77fcd90
r: add license and missing versions and fix rmath build directory ( #41260 )
...
* Add R license and missing versions
* Fix rmath build directory
2023-11-30 16:18:02 -08:00
Matthieu Dorier
6cf36a1817
mochi-margo: added version 0.15.0 ( #41319 )
2023-11-30 15:32:24 -08:00
Matthieu Dorier
ee40cfa830
mochi-thallium: adding a few new versions ( #41323 )
...
* mochi-thallium: added a few newer versions
* mochi-thallium: added constraint on the version of margo required
* removed thallium 0.12 which needs updating
* mochi-thallium: fixed hash for version 0.12.0
* removed thallium 0.12 which needs updating (again)
2023-11-30 15:19:32 -08:00
Harmen Stoppels
04f64d4ac6
tests: use temporary_store ( #41369 )
2023-11-30 15:11:35 -08:00
jmlapre
779fef7d41
trilinos: new pytrilinos2 variant ( #40615 )
2023-11-30 14:08:58 -07:00
Richard Berger
5be3ca396b
Singularity-EOS update ( #41333 )
...
* singularity-eos: deprecate v1.6 versions and remove unused code
* singularity-eos: add v1.8.0
2023-11-30 12:55:25 -08:00
Dave Keeshan
e420441bc2
Fix flex for build and link, limit gcc to 7 or greater ( #41335 )
2023-11-30 12:51:48 -08:00
Dave Keeshan
a039dc16fa
Move compiler renaming to filter_compiler_wrappers ( #41336 )
2023-11-30 12:48:59 -08:00
Christopher Christofi
b31c89b110
perl-carp-assert: add new package with version 0.22 ( #41347 )
...
* perl-carp-assert: add new package with version 0.22
* fix style
2023-11-30 12:46:24 -08:00
Christopher Christofi
bc4f3d6cbd
perl-parse-yapp: add new package with version 1.21 ( #41348 )
2023-11-30 12:37:26 -08:00
Matthias Wolf
40209506b7
acfl: truncate version version number ( #41354 )
...
When using `spack external find acfl`, we get the full version string
with 4 components in `packages.yaml`. This PR truncates the version
nubmer when finding the `armpl` component to be able to run without
intervention.
2023-11-30 12:32:10 -08:00
Massimiliano Culpo
6ff07c7753
Fix issue with latest mypy ( #41363 )
2023-11-30 20:31:03 +01:00
Adam J. Stewart
d874c6d79c
py-tensorflow-estimator: add new versions ( #41364 )
2023-11-30 10:54:11 -08:00
Adam J. Stewart
927e739e0a
GDAL: add v3.8.1 ( #41365 )
2023-11-30 10:51:42 -08:00
Tom Scogland
dd607d11d5
developer tools stack try 2 ( #40921 )
...
* developer tools stack try 2
This version is actually in use locally and has largely stabilized, at
least on x86. Some packages are still a challenge on ppc64le, but maybe
worth keeping this working as a set.
* add packages, try to get container with newer gcc
* remove reuse: true
* try to get cmake to build on medium, 25 minutes is too long
* add lsd package and add to dev tools stack
* clean up fzf dependency and sorting
* Update share/spack/gitlab/cloud_pipelines/stacks/developer_tools/spack.yaml
* cuda: add 12.3.0 (#40827 )
* Switch to dashes
* yet more underscores
---------
Co-authored-by: Paul R. C. Kent <kentpr@ornl.gov>
2023-11-30 18:32:21 +00:00
Harmen Stoppels
d436e97fc6
reuse concretization: allow externals from remote when locally configured ( #35975 )
...
This looks to me like the best compromise regarding externals in a
build cache. I wouldn't want `spack install` on my machine to install
specs that were marked external on another. At the same time there are
centers that control the target systems on which spack is used, and
would want to use external in buildcaches.
As a solution, reuse concretization will now consider those externals
used in buildcaches that match a locally configured external in
packages.yaml.
So for example person A installs and pushes specs with this config:
```yaml
packages:
ncurses:
externals:
- spec: ncurses@6.0.12345 +feature
prefix: /usr
```
and person B concretizes and installs using that buildcache with the
following config:
```yaml
packages:
ncurses:
externals:
- spec: ncurses@6
prefix: /usr
```
the spec will be reused (or rather, will be considered for reuse...)
2023-11-30 09:38:05 -08:00
Harmen Stoppels
f3983d60c2
tests: add missing mutable db ( #41359 )
2023-11-30 18:37:35 +01:00
Harmen Stoppels
40e705d39e
tests: fix side effects of default_config fixture ( #41361 )
...
* tests: default_config drop scope
* use default_config elsewhere
* use parse_install_tree for missing defaults in default config
2023-11-30 18:19:10 +01:00
Harmen Stoppels
d92457467a
test_variant_propagation_with_unify_false: missing fixture ( #41345 )
2023-11-30 17:27:53 +01:00
Harmen Stoppels
4c2734fe14
--scope: lazy defaults ( #41353 )
2023-11-30 15:35:21 +01:00
Taillefumier Mathieu
34d791189d
Update SIRIUS version for CP2K master ( #41264 )
...
* Update SIRIUS version for CP2K master
* Update var/spack/repos/builtin/packages/cp2k/package.py
Co-authored-by: Rocco Meli <r.meli@bluemail.ch>
---------
Co-authored-by: Rocco Meli <r.meli@bluemail.ch>
2023-11-30 04:08:22 -07:00
Vinícius
eec9eced1b
simgrid: add v3.34 and v3.35 ( #41340 )
2023-11-30 11:23:57 +01:00
Christopher Christofi
3bc8a7aa5f
use double quotes where spack style finds errors ( #41349 )
2023-11-30 09:46:02 +01:00
Massimiliano Culpo
3b045c289d
Fix a typo in an integrity constraint ( #41334 )
2023-11-30 09:44:51 +01:00
Harmen Stoppels
4b93c57d44
argparse: make scope choices lazy s.t. validation in tests works ( #41344 )
2023-11-30 08:37:11 +01:00
