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Author SHA1 Message Date
Greg Becker
cfb6f21236
externals: allow package prefs to configure default not buildable (#16735) 
Allows `all` to be configured non-buildable in packages.yaml.

The following config would only allow zlib to be built by Spack, all other packages would have to be found as externals.

```
packages:
  all:
    buildable: False
  zlib:
    buildable: True
```
 2020-05-20 17:09:07 -07:00
Tamara Dahlgren
92989fbbfd
tests: check presence not equality for rpath changes (#16637) 
Fixes #16636
 2020-05-20 18:11:26 +02:00
Adam J. Stewart
cc08070da9
py-scikit-learn: add latest version (#16731) 2020-05-19 20:59:11 -05:00
Christoph Junghans
46ab939249
mantevo: update urls to new website (#16732) 2020-05-19 16:19:17 -05:00
Andrew W Elble
7fe6c0945a
py-tensorflow-estimator: new version 2.2.0 (#16726) 2020-05-19 14:29:13 -05:00
Hadrien G
9c16a728fd
Add new Acts release (#16718) 2020-05-19 13:16:57 -05:00
Thomas Madlener
7948344bcd
Introduce version 1.0.0 for py-xenv and remove unreleased development release (#16722) 
Problems in 0.0.4 should be fixed for 1.0.0
 2020-05-19 13:14:45 -05:00
ddeidda
20f2a6c2e8
update URL and sha256 for aws-parallelcluster 2.7.0 (#16717) 
Signed-off-by: ddeidda <ddeidda@amazon.com>
 2020-05-19 10:58:46 -05:00
Dr. Christian Tacke
63f09a6662
openssl: Be Explicit About perl Usage (#16721) 
The openssl build process can use the wrong perl for
various reasons, including:
* Wrong value in PERL env var
* The build process first looks for `perl5`, which the
  spack system does not provide, but some other
  distributions provide it. That way, the build process can
  end up using the wrong perl.

Stop all of these problems by explicitly setting PERL to
the to be used dependency.
 2020-05-19 10:58:04 -05:00
darmac
31ab62fb5e
Add new package: http-post (#16678) 
* Add new package: http-post

* refine version name
 2020-05-19 10:56:52 -05:00
darmac
05aacb584e
Add new package: http-ping (#16675) 
* Add new package: http-ping

* refine version name
 2020-05-19 10:56:22 -05:00
Scott Wittenburg
b1f1f5dddb Pipelines: Ensure consistent spack version for entire pipeline 
Also retry jobs always, as script failure is not confined to only our
spack ci rebuild command exit code.
 2020-05-19 09:40:02 -06:00
vvolkl
31ccf80294
[podio] fix root cxxstd dependency (#16708) 2020-05-18 21:52:18 -05:00
darmac
9d766ae1fa
Add new package: http-load (#16676) 
* Add new package: http-load

* refine version format

* fix date/version error
 2020-05-18 21:41:00 -05:00
darmac
3f6164053d
Add new package: http-get (#16677) 
* Add new package: http-get

* refine version name
 2020-05-18 21:40:34 -05:00
Greg Becker
84889ef3a3
move source dir to last cmake arg (#16709) 2020-05-18 16:39:13 -07:00
Adam J. Stewart
cf4c48c37e
TensorFlow: add new versions (#16703) 2020-05-18 16:38:37 -05:00
Justin S
294a91b580
r-decipher: new package at 2.12.0 (#16705) 2020-05-18 16:37:06 -05:00
Justin S
d768b34f17
angsd: add 0.933, add misc programs to install (#16669) 
* angsd: add 0.933, add misc programs to install

* angsd: add r variant
 2020-05-18 16:07:35 -05:00
Utkarsh Ayachit
154a442817
paraview: use kits by default (#16698) 
Adding a variant to enable/disable kits and making the default use kits.
 2020-05-18 12:59:40 -05:00
Amjad Kotobi
d957c621ef
r-tensor: New package (#16697) 2020-05-18 11:53:17 -05:00
Amjad Kotobi
864d4a2232
r-goftest: New package (#16699) 2020-05-18 11:51:26 -05:00
Nick Robison
0b37188e4f
Update Apache arrow to 0.17.1 (#16701) 
Update Arrow to the latest version.

Also add an additional dependency on `thrift` when building with Parquet support.
 2020-05-18 11:49:44 -05:00
darmac
28ef9cad3b
Add new package: hyperscan (#16681) 
* Add new package: hyperscan

* hyperscan: remove cmake_args()
 2020-05-18 11:36:00 -05:00
archxlith
931932d65d
New package: py-pyeda (#16416) 
* New package: py-pyeda

* py-pyeda: added dep for python 3.3 or greater

* [py-pyeda] Added space in depends_on python line
 2020-05-18 10:01:59 -05:00
Adam J. Stewart
2d464f69f8
PyYAML: fix linking to libyaml (#16682) 2020-05-18 09:57:51 -05:00
h-denpo
ce8cf5d9b0
revocap-refiner: fixed typo in pic flags (#16694) 2020-05-18 10:04:10 +02:00
Toyohisa Kameyama
ffdd94dd9f
hwloc: Add libudev variant. (#16615) 
* hwloc: Add libudev variant.

* typo fix.

* Wrong version for libudev variant is fixed.

* Add maintainers.
 2020-05-17 20:00:23 -05:00
Marko Kabic
a4d64402ae
Add new version of COSMA: 2.2.0 (#16672) 
* Updated versions of COSMA.

* Added an empty line for formatting.

* Switched to sha256.

* Renamed gpu variant to cuda. Extending the CudaPackage base class.
 2020-05-17 12:40:48 -05:00
Amjad Kotobi
045063da7f
r-spatstat-data: New package (#16688) 2020-05-17 12:28:26 -05:00
Amjad Kotobi
d776e52979
r-rms: New package (#16683) 
* r-rms: New package

* r-rms: deleted duplicated dependency

* r-rms: deleting comma
 2020-05-17 12:27:33 -05:00
Amjad Kotobi
9685792f83
r-spatialpack : New package (#16664) 
* r-spatialpack : New package

* r-spatialpack : R dependeny added type

* r-spatialpack: Description was missing
 2020-05-17 10:22:52 -05:00
Michael Kuhn
41907639c4
py-scipy: Fix build with gcc@10: (#16687) 2020-05-16 20:55:20 -05:00
Justin S
babfd144ad
py-fastcluster: new package at 1.1.26 (#16588) 
* py-fastcluster: new package at 1.1.26

* py-fastcluster: add py-setuptools dep
 2020-05-16 16:12:50 -05:00
Amjad Kotobi
5912b8c7cd
r-yaimpute: New package (#16658) 2020-05-16 16:07:58 -05:00
Amjad Kotobi
f71768b1d6
r-envstats: New package (#16659) 2020-05-16 16:07:10 -05:00
h-denpo
a97ce63218
New package frontistr (#16660) 
"""Open-Source Large-Scale Parallel FEM Program for
        Nonlinear Structural Analysis"""
 2020-05-16 16:06:25 -05:00
Amjad Kotobi
6ca1052999
r-spatstat-utils : New package (#16663) 2020-05-16 16:03:49 -05:00
Mark W. Krentel
b858eebc51
hpctoolkit: add dependency on gotcha (#16670) 2020-05-16 15:59:33 -05:00
Paul
32238391a9
Add Go versions 1.14.3 and 1.13.11 (#16673) 2020-05-16 15:55:51 -05:00
darmac
110b15f20e
Add new package: hiredis (#16679) 2020-05-16 15:51:01 -05:00
darmac
b6498c44af
Add new package: guacamole-server (#16680) 2020-05-16 15:50:24 -05:00
TZ
2ebadbc267
intel-mpi: add libfabrics directory to SPACK_COMPILER_EXTRA_RPATHS (#15214) 
workaround for not finding an appropriate libfabrics.so with Intel
MPI 2019+. Fixes #11140 and #12493
 2020-05-16 10:40:40 -05:00
Amjad Kotobi
983f05ac41
r-polspline: new package (#16648) 
* r-polspline: new package

* r-polspline: updated urls
 2020-05-16 09:07:34 -05:00
Omar Padron
97d7ef678d
fix catalyst so that it doesn't depend on a particular spelling of python (#16667) 2020-05-15 15:11:32 -04:00
Greg Becker
32a9adcf60
modules: use projections format for naming schemes (#16629) 
* update tcl naming_scheme to use projections

* add projections to lmod modules
 2020-05-15 11:12:52 -07:00
Stephen Hudson
955a3db206
py-petsc4py: allow ~mpi variant (#16595) 
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
 2020-05-15 15:14:06 +02:00
Michael Kuhn
90e15cae16
likwid: fix build with gcc@10: (#16641) 2020-05-15 13:23:57 +02:00
Michael Kuhn
154504da71
binutils: fix build with gcc@10: (#16661) 
The issue seems to be fixed in the development version already.
 2020-05-15 13:13:04 +02:00
Scott Wittenburg
e0572a7d96 Pipelines: Support DAG scheduling and dynamic child pipelines 
This change also adds a code path through the spack ci pipelines
infrastructure which supports PR testing on the Spack repository.
Gitlab pipelines run as a result of a PR (either creation or pushing
to a PR branch) will only verify that the packages in the environment
build without error.  When the PR branch is merged to develop,
another pipeline will run which results in the generated binaries
getting pushed to the binary mirror.
 2020-05-14 21:11:07 -07:00