Commit graph

4513 commits

Author SHA1 Message Date
Adam J. Stewart
cc7df29e81 Keep dashes in command names, translate to underscores 2016-08-30 15:37:23 -05:00
Adam J. Stewart
ae2a803496 Make subcommands importable, '-' -> '_', fixes #1642 2016-08-30 15:36:33 -05:00
Adam J. Stewart
8d1a753a1b Fix spack --profile, fixes #1639 2016-08-30 15:35:58 -05:00
Adam J. Stewart
e04b76c2c3 Add spack to the PATH for doc tests 2016-08-30 15:35:58 -05:00
Adam J. Stewart
a0c8aca3a2 Remove py-mercurial, going with mercurial package instead 2016-08-30 15:35:58 -05:00
Adam J. Stewart
6795f4ca12 Use console instead of shell syntax lexer, fixes #1634 2016-08-30 15:35:58 -05:00
Adam J. Stewart
f856952728 Always run Documentation tests 2016-08-30 15:32:54 -05:00
Adam J. Stewart
f78134efa5 Fixes #1620, Missing references 2016-08-30 15:32:54 -05:00
Adam J. Stewart
867a92f083 Fixes #1618, Problems with spack package-list 2016-08-30 15:32:54 -05:00
Adam J. Stewart
69e50595bf Fix docstrings for core Spack libraries, fixes #1612 2016-08-30 15:32:54 -05:00
Adam J. Stewart
02239c094e Fix unexpected indentation in .rst files, #1612 2016-08-30 15:29:51 -05:00
Adam J. Stewart
eb56744f4d Fix package docstrings, #1612 2016-08-30 15:29:50 -05:00
Adam J. Stewart
0614bd206f Fix #1608, Include file not found 2016-08-30 15:28:09 -05:00
Adam J. Stewart
2326355497 Fix #1604 and fix #1605, title underline problems 2016-08-30 15:28:08 -05:00
Adam J. Stewart
c36f13e44d Added more missing dependencies 2016-08-30 15:21:15 -05:00
Adam J. Stewart
fda7fcd73d Fix #1594, duplicate explicit target name 2016-08-30 15:21:15 -05:00
Adam J. Stewart
a235d030ac Fix typos and bugs in Travis config file
Forgot to change one of the TEST_TYPEs to TEST_SUITE.
-eq not working, trying == instead.
Cache doesn't seem to be working, removed.
2016-08-30 15:21:15 -05:00
Adam J. Stewart
7f9d098c2f Add mercurial package, used as test dependency 2016-08-30 15:21:15 -05:00
Adam J. Stewart
1fc14fd7ed Only run unit tests when core Spack framework is modified 2016-08-30 15:21:15 -05:00
Adam J. Stewart
d2d6c91b66 Run documentation tests when documentation is modified 2016-08-30 15:21:15 -05:00
Adam J. Stewart
679f787a65 Add generic changed_files script 2016-08-30 15:21:15 -05:00
Adam J. Stewart
c6aa32bb3c Some flake8 settings weren't documented 2016-08-30 15:20:03 -05:00
Adam J. Stewart
732c1985ef Overhaul Spack's CI Infrastructure 2016-08-30 15:20:03 -05:00
Todd Gamblin
7e4c6afd91 Merge pull request #1412 from adamjstewart/features/cmake
Overhaul of CMake package and compression libraries
2016-08-30 12:18:56 -07:00
Todd Gamblin
abd1546d86 Merge pull request #1668 from ax3l/topic-pngwriter
PNGwriter: Add Spack Package
2016-08-30 10:21:27 -07:00
Todd Gamblin
fa99b76b58 Merge pull request #1667 from ax3l/topic-libsplash
libSplash: Add Spack Package
2016-08-30 10:20:57 -07:00
Axel Huebl
d2d2234def
HDF5 Dependency: Rewrite to Union
@adamjstewart
```
think you'll find that if you try running something like:
spack spec libsplash ^hdf5@1.8.15
It will complain that libsplash does not depend on hdf5.
This is a bug in Spack's dependency resolution. A workaround
for this is to tell it to always depend on hdf5.
```

@davydden
```
to expand on @adamjstewart comment, spack will make a union
of dependencies,
i.e. hdf5@1.8.6: + hdf5+mpi = hdf5:1.8.6:+mpi, that's why it works.
```

thank you for the hint!
2016-08-30 17:00:09 +02:00
Axel Huebl
03c4d65af1
PNGwriter: Add Spack Package
Adds a package for
[PNGwriter](https://github.com/pngwriter/pngwriter/),
a simple high-level C++ png API used in scientific projects.

```
PNGwriter is a very easy to use open source graphics library that
uses PNG as its output format. The interface has been designed to be
as simple and intuitive as possible. It supports plotting and reading
pixels in the RGB (red, green, blue), HSV (hue, saturation,
value/brightness) and CMYK (cyan, magenta, yellow, black) colour
spaces, basic shapes, scaling, bilinear interpolation, full TrueType
antialiased and rotated text support, bezier curves, opening existing
PNG images and more.
```

PNGwriter is a dependency for [PIConGPU](http://picongpu.hzdr.de),
an open-source, many-core, fully-relativistic particle-in-cell code
and further software developed at
[Helmholz-Zentrum Dresden - Rossendorf](https://www.hzdr.de).
2016-08-30 12:45:53 +02:00
Axel Huebl
3aaa077c9f
libSplash: Add Spack Package
Adds a package for
[libSplash](https://github.com/ComputationalRadiationPhysics/libSplash),
a high-level library around serial and parallel HDF5 for regular
grids and particle data sets.

```
libSplash aims at developing a HDF5-based I/O library for HPC
simulations. It is created as an easy-to-use frontend for the
standard HDF5 library with support for MPI processes in a cluster
environment. While the standard HDF5 library provides detailed
low-level control, libSplash simplifies tasks commonly found in
large-scale HPC simulations, such as iter- ative computations
and MPI distributed processes.
```

libSplash is a dependency for [PIConGPU](http://picongpu.hzdr.de),
an open-source, many-core, fully-relativistic particle-in-cell
code and further software developed at
[Helmholz-Zentrum Dresden - Rossendorf](https://www.hzdr.de).

libSplash builds in two versions, one without MPI writing
domain-decomposed posix-style HDF5 files per process and one
(default) with MPI and MPI-I/O ("parallel HDF5") support
aggregating into a single file per MPI communicator.

libSplash is used in conjunction with
[openPMD](http://openPMD.org), see also
[github.com/openPMD/](https://github.com/openPMD/).
2016-08-30 12:42:39 +02:00
Todd Gamblin
dae00fec29 Move all documentation generation into conf.py
- extra steps in Makefile are ignored by readthedocs
2016-08-30 00:47:04 -07:00
Todd Gamblin
47bf7ecb2b Merge pull request #1652 from ax3l/topic-updateAdios110
Update ADIOS Package
2016-08-29 22:59:39 -07:00
Massimiliano Culpo
3ecf4ef8c9 resources : added docs fixes #1551 (#1627) 2016-08-29 22:40:50 -07:00
Todd Gamblin
8ab47537c7 Fix exception constructors. (#1663) 2016-08-29 22:34:47 -07:00
Elizabeth Fischer
cf11c32720 libpciaccess: Changed libtool to a build dependency. (#1602) 2016-08-29 22:11:27 -07:00
Axel Huebl
0f40175524
Remove Space, Enable Parallel
- remove space before comma
- enable parallel build again (seems to work)
2016-08-30 02:02:48 +02:00
Axel Huebl
ecacce7e07
ADIOS: Use NetCDF Prefix from spec's 2016-08-30 00:51:44 +02:00
Gregory Lee
e32247e53a added qt-creator (#1659) 2016-08-29 15:45:16 -07:00
Axel Huebl
37f489886e
Defaults: MPI=True, Fortran=False
- ADIOS is mainly a parallel I/O library
- a Fortran compiler is non-standard in a minimal install
2016-08-30 00:14:29 +02:00
Axel Huebl
b33777fd2f
RM Outdated Comments, Versions & Code 2016-08-29 23:18:31 +02:00
Axel Huebl
88254a14a7
Always External MXML; type='build'
- always use `mxml` as an external dependency in spack
- declare `build`-only dependencies correctly
2016-08-29 23:01:20 +02:00
Axel Huebl
e1464ece55
ADIOS: disable parallel make 2016-08-29 19:06:22 +02:00
Robert D. French
a21d3d353b New URL scheme for newer (and older) PDTs (#1651) 2016-08-29 10:01:04 -07:00
Todd Gamblin
2850ca60be Change spack --profile sort key for 2.6 compatibility. (#1656) 2016-08-29 09:56:54 -07:00
Axel Huebl
f2eb1c93df
ADIOS: Run Autotools First 2016-08-29 18:42:07 +02:00
Robert D. French
4095eb2196 Ole' GNU nano; Actually ran flake8 (#1649) 2016-08-29 09:21:19 -07:00
Todd Gamblin
f7ee8d001a Merge pull request #1564 from adamjstewart/features/create
Suggest setuptools when creating Python package
2016-08-29 09:11:45 -07:00
Todd Gamblin
57033a62fa Merge pull request #1563 from adamjstewart/features/sphinx
Add all Sphinx dependencies
2016-08-29 09:08:46 -07:00
Axel Huebl
4bd863761a
Update ADIOS Package
This PR updates the ADIOS package.

**Changes:**

- add latest stable release `1.10.0`
- add previous versions (hashes)
- add default license header
- add build options (shamelessly taken from HDF5 package)
- add validation for excisting FC (as in HDF5) and make optional
- handle mxml dependency correctly (not required in 1.10.0+)
- add `CFLAGS=-fPIC` to build shared (python) libs in ADIOS' lib
- remove `-DMPICH_IGNORE_CXX_SEEK` since it is normally not required
- remove `MPICC/CXX?FC` since `--with-mpi` just performs well
- add transforms:
  - `zlib`: useful (optional) default
  - `szip`: optional (compile often broken)
- add transports that are not as performant as the `.bp` format:
  - `hdf5`: non-default
  - `netcdf`: non-default, close #1610
2016-08-29 17:16:15 +02:00
Todd Gamblin
31cab4bae2 Merge pull request #1619 from davydden/pkg/nwchem_macos_fix
nwchem: use basename for CC and FC
2016-08-29 06:51:14 -07:00
Denis Davydov
66ea42f8d7 nwchem: use basename for CC and FC 2016-08-29 15:15:23 +02:00