Alec Scott
c25d4cbc1d
gradle: add v8.1.1 ( #37986 )
2023-05-29 09:29:07 +02:00
snehring
ccb07538f7
Beast2: add v2.7.4, add javafx ( #37419 )
2023-05-29 09:28:32 +02:00
Alec Scott
1356b13b2f
form: add v4.3.1 ( #37984 )
2023-05-29 09:24:34 +02:00
Tamara Dahlgren
935f862863
tests/flibcpp: convert to new stand-alone test process ( #37782 )
2023-05-28 10:47:23 +02:00
Tamara Dahlgren
9f6d9df302
patchelf: convert to new stand-alone test process ( #37831 )
2023-05-28 10:46:23 +02:00
Tamara Dahlgren
65d33c02a1
gasnet: convert to new stand-alone test process ( #35727 )
2023-05-28 10:45:11 +02:00
Tamara Dahlgren
40073e7b21
hdf: convert to new stand-alone test process ( #37843 )
2023-05-28 10:44:42 +02:00
Tamara Dahlgren
752e02e2f2
tests/upcxx: convert to new stand-alone test process ( #37832 )
...
Co-authored-by: Dan Bonachea <dobonachea@lbl.gov>
2023-05-28 10:44:04 +02:00
Vanessasaurus
d717b3a33f
Automated deployment to update package flux-core 2023-05-04 ( #37421 )
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Co-authored-by: github-actions <github-actions@users.noreply.github.com>
2023-05-28 10:42:44 +02:00
Bruno Turcksin
9817f24c9a
kokkos-nvcc-wrapper: Remove unnecessary dependencies ( #37794 )
2023-05-28 10:19:30 +02:00
Bruno Turcksin
1f7c4b0557
Kokkos: remove unused variants ( #37800 )
2023-05-28 10:18:53 +02:00
Xavier Delaruelle
6c42d2b7f7
modules: improve default naming scheme ( #37808 )
...
Change default naming scheme for tcl modules for a more user-friendly
experience.
Change from flat projection to "per software name" projection.
Flat naming scheme restrains module selection capabilities. The
`{name}/{version}...` scheme make possible to use user-friendly
mechanisms:
* implicit defaults (`module load git`)
* extended default (`module load git/2`)
* advanced version specifiers (`module load git@2:`)
2023-05-28 10:06:30 +02:00
Tamara Dahlgren
8df036a5a5
tests/cmake: convert to new stand-alone test process ( #37724 )
2023-05-28 09:59:21 +02:00
dependabot[bot]
582ebee74c
build(deps): bump actions/setup-python from 4.6.0 to 4.6.1 ( #37894 )
...
Bumps [actions/setup-python](https://github.com/actions/setup-python ) from 4.6.0 to 4.6.1.
- [Release notes](https://github.com/actions/setup-python/releases )
- [Commits](57ded4d7d5...bd6b4b6205
2023-05-28 09:58:14 +02:00
Annop Wongwathanarat
1017b9ddde
acfl: add version 23.04.1 and fix checksums for 22.1 ( #37908 )
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Checksums for 22.1 need updates due to an IT incident at developer.arm.com. The package tarballs needed to be recreated.
2023-05-28 09:57:31 +02:00
Thomas Madlener
80ae73119d
whizard: Fix parallel build race condition ( #37890 )
2023-05-28 09:55:52 +02:00
Tamara Dahlgren
1d88f690a4
tests/darshan-runtime: convert to new stand-alone test process ( #37838 )
2023-05-28 09:46:31 +02:00
Filippo Spiga
fbb271d804
Adding NVIDIA HPC SDK 23.5 ( #37913 )
2023-05-28 09:45:08 +02:00
Hao Lyu
d6aac873b7
copy namelist and xml to ./bin ( #37933 )
2023-05-28 09:43:27 +02:00
Tamara Dahlgren
ab3ffd9361
archer: convert to new stand-alone test process ( #35697 )
2023-05-28 09:41:38 +02:00
Tamara Dahlgren
3b9454a5cc
tests/bolt: convert to new stand-alone test process ( #35695 )
...
* bolt: convert to new stand-alone test process
* Remove redundant test_requires_compiler (so above directives)
2023-05-27 18:46:11 -07:00
Tamara Dahlgren
c8eb0f9361
tests/amrex: convert to new stand-alone test process ( #35698 )
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* amrex: convert to new stand-alone test process
* smoke->stand-alone
2023-05-27 18:44:06 -07:00
George Young
fb0f14eb06
py-macs2: add 2.2.8, updated dependencies ( #37944 )
...
* py-macs2: add 2.2.8, updated dependencies
* Update package.py
---------
Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk>
2023-05-27 14:29:12 -05:00
George Young
e489ee4e2e
py-cutadapt: add 4.4, 4.3, 4.2 versions ( #37929 )
...
* py-cutadapt: add 4.4, 4.3, 4.2 versions
* Update var/spack/repos/builtin/packages/py-cutadapt/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Update var/spack/repos/builtin/packages/py-cutadapt/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Update package.py
---------
Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-05-27 14:27:43 -05:00
Alex Richert
fcd49f2f08
Add shared and pic variants to libtiff ( #37965 )
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* Add static-only option for libtiff
* update libtiff to add pic variant
* fix libtiff pic setting
2023-05-27 11:24:27 -05:00
Alex Richert
b3268c2703
freetype: add pic and shared variants ( #37898 )
2023-05-27 01:05:10 +02:00
George Young
d1bfcfafe3
py-multiqc: add 1.14, bump dependencies ( #37946 )
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Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk>
2023-05-26 17:55:03 -05:00
Manuela Kuhn
490c9f5e16
py-datalad-metadata-model: add 0.3.10 ( #37937 )
2023-05-26 17:28:36 -05:00
Manuela Kuhn
85628d1474
py-debugpy: add 1.6.7 ( #37941 )
2023-05-26 17:27:50 -05:00
Manuela Kuhn
720c34d18d
py-distro: add 1.8.0 ( #37942 )
2023-05-26 17:27:06 -05:00
mschouler
cd175377ca
Update melissa build ( #37609 )
...
* Remove deprecated package
* Add up-to-date melissa builds
* Remove blank lines and FIXME comments
* Use directive syntax for maintainers and remove unnecessary comments
* Remove unused function
* Deprecate former melissa recipe
* Change melissa python package name
* Update setuptools and rapidjson dependencies versions
* Fix mypy error
* Restore rapidjson version
* Variant simplification
* Make variants lower case
* Deprecate former omitted version
* Make torch version consistent with requirement file
* Fix variants definition
* Fix style error
---------
Co-authored-by: Marc Schouler <marc.schouler@inria.fr>
2023-05-26 17:26:29 -05:00
Manuela Kuhn
b91ec05e13
py-coloredlogs: add 15.0.1 and py-humanfriendly: add 10.0 ( #37905 )
2023-05-26 17:22:02 -05:00
Manuela Kuhn
3bb15f420b
py-contourpy: add 1.0.7 ( #37914 )
2023-05-26 17:19:40 -05:00
Manuela Kuhn
124a81df5b
py-coverage: add 5.5 ( #37922 )
2023-05-26 17:06:39 -05:00
Lee James O'Riordan
d9472c083d
Update py-pennylane ecosystem to support v0.30.0 ( #37763 )
...
* Update PennyLane ecosystem for 0.30 release
* Update package dep versions
* Fix formatting
* Update dep versions
* Remove PL hard pin and rely on PLQ to define version
* Update var/spack/repos/builtin/packages/py-pennylane-lightning-kokkos/package.py
Co-authored-by: Vincent Michaud-Rioux <vincent.michaud-rioux@xanadu.ai>
* Convert pybind11 from build to link dep, and PL ver limit
---------
Co-authored-by: Vincent Michaud-Rioux <vincent.michaud-rioux@xanadu.ai>
2023-05-26 16:55:21 -05:00
Manuela Kuhn
ac2a5ef4dd
py-beautifulsoup4: add 4.12.2 ( #37820 )
2023-05-26 16:54:43 -05:00
Manuela Kuhn
ea210a6acf
py-chardet: add 5.1.0 ( #37879 )
...
* py-chardet: add 5.1.0
* Remove py-setuptools as run dependency
2023-05-26 16:51:54 -05:00
kwryankrattiger
afb3bef7af
CI: Use relative path in default script ( #36649 )
2023-05-26 14:28:48 -06:00
George Young
b5b5881426
picard: add 3.0.0, switch to java@17: ( #37948 )
...
Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk>
2023-05-26 15:38:26 -04:00
George Young
76fc7915a8
minimap2: adding 2.26 ( #37945 )
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Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk>
2023-05-26 10:12:14 -07:00
George Young
e7798b619b
hyphy: add 2.5.51hf, update dependencies for switch to MPI ( #37938 )
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Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk>
2023-05-26 09:48:26 -07:00
Kai Torben Ohlhus
8ecef12a20
Strip inactive maintainer. ( #36048 )
2023-05-26 10:47:39 -04:00
Brian Spilner
694292ebbf
cdo: add 2.2.0 ( #37244 )
2023-05-26 10:01:49 +02:00
Howard Pritchard
7f18f6f8a1
PMIx and PRRTe: disabled use of sphinx ( #37750 )
...
Related to https://github.com/spack/spack/pull/37717
No need to be rebuilding openmpi man pages and other docs in
spack as it almost always is used with release tarballs.
See #37717 for more details.
Signed-off-by: Howard Pritchard <howardp@lanl.gov>
2023-05-26 09:49:02 +02:00
John W. Parent
0b12a480eb
Windows MSVC: do not set sdk version if installing sdk ( #37930 )
...
Note the win-sdk package is not installable and reports an error
which instructs the user how to add it. Without this fix, a
(more confusing) error occurs before this message can be generated.
2023-05-25 21:38:04 -04:00
George Young
2d91a79af3
fastp: add version 0.23.3, add build dependencies ( #37931 )
...
Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk>
2023-05-25 21:28:13 -04:00
Leonard-Anderson-NNL
72fcee7227
gradle:add 7.3 ( #37928 )
...
Co-authored-by: Cloud User <leonardanderson@leonardander001.hzterscemazurawp3xenxzahla.bx.internal.cloudapp.net>
2023-05-25 20:55:09 -04:00
John W. Parent
d147ef231f
Windows: fix "spack build-env" ( #37923 )
...
"spack build-env" was not generating proper environment variable
definitions on Windows; this commit updates the generated commands
to succeed with batch/PowerShell.
2023-05-25 17:08:15 -07:00
eugeneswalker
1c7af83d32
update ci ml darwin keypath ( #37927 )
2023-05-25 16:27:56 -07:00
John W. Parent
b982dfc071
Windows CI: add paraview deps nightly build ( #37924 )
...
Add a nightly job to attempt building all Paraview dependencies and
upload the results to cdash. This check doesn't affect the reported
build/test status of Spack. We are using this to monitor the state of
Windows support while working on more-robust checks (eventually the
Windows build will have to succeed to merge PRs to Spack).
2023-05-25 16:13:41 -07:00
